1JXWA

Crambin mixed sequence form at 180 k. protein/water substates
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.
pubmed doi rcsb
molecule tags Plant protein
molecule keywords Crambin
total genus 16
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1jxwA00
3U7TA 1CXRA 2PLHA 2EYDA 1EJGA 1AB1A 3UE7B 4FC1A 1ORLA 1BHPA 1JXWA 2FD7A 1YV8A 1NBLA 1JXTA 2FD9A 1CCNA 1JMPA 2EYAA 1YVAA 3SZSA 1ED0A 2V9BA 1JMNA 1JXUA 1OKHA 1JXYA 1WUWA 1JXXA 2EYBA 1CCMA 1CBNA 1CNRA 3C8PA 1CRNA 2EYCA 3NIRA
chains in the Genus database with same CATH superfamily
3U7TA 1CXRA 2PLHA 2EYDA 1JNBA 1IJGA 1H5WA 1EJGA 1AB1A 3UE7B 1FOUA 4FC1A 1ORLA 1BHPA 1JXWA 2FD7A 1YV8A 1NBLA 1JXTA 2FD9A 1CCNA 1JMPA 2EYAA 1YVAA 3SZSA 1ED0A 2V9BA 1JMNA 1JXUA 1OKHA 1JXYA 1WUWA 1JXXA 2EYBA 1CCMA 1CBNA 1CNRA 3C8PA 1CRNA 2EYCA 3NIRA
chains in the Genus database with same CATH topology
3U7TA 1CXRA 2PLHA 2EYDA 1EJGA 1AB1A 3UE7B 4FC1A 1ORLA 1BHPA 1JXWA 2FD7A 1YV8A 1NBLA 1JXTA 2FD9A 1CCNA 1JMPA 2EYAA 1YVAA 3SZSA 1ED0A 2V9BA 1JMNA 1JXUA 1OKHA 1JXYA 1WUWA 1JXXA 2EYBA 1CCMA 1CBNA 1CNRA 3C8PA 1CRNA 2EYCA 3NIRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3U7T A;  1CXR A;  2PLH A;  2EYD A;  1EJG A;  1AB1 A;  3UE7 B;  4FC1 A;  1ORL A;  1BHP A;  1JXW A;  2FD7 A;  1YV8 A;  1NBL A;  1JXT A;  2FD9 A;  1CCN A;  1JMP A;  2EYA A;  1YVA A;  3SZS A;  1ED0 A;  2V9B A;  1JMN A;  1JXU A;  1OKH A;  1JXY A;  1WUW A;  1JXX A;  2EYB A;  1CCM A;  1CBN A;  1CNR A;  3C8P A;  1CRN A;  2EYC A;  3NIR A; 
#chains in the Genus database with same CATH topology
 3U7T A;  1CXR A;  2PLH A;  2EYD A;  1JNB A;  1IJG A;  1H5W A;  1EJG A;  1AB1 A;  3UE7 B;  1FOU A;  4FC1 A;  1ORL A;  1BHP A;  1JXW A;  2FD7 A;  1YV8 A;  1NBL A;  1JXT A;  2FD9 A;  1CCN A;  1JMP A;  2EYA A;  1YVA A;  3SZS A;  1ED0 A;  2V9B A;  1JMN A;  1JXU A;  1OKH A;  1JXY A;  1WUW A;  1JXX A;  2EYB A;  1CCM A;  1CBN A;  1CNR A;  3C8P A;  1CRN A;  2EYC A;  3NIR A; 
#chains in the Genus database with same CATH homology
 3U7T A;  1CXR A;  2PLH A;  2EYD A;  1EJG A;  1AB1 A;  3UE7 B;  4FC1 A;  1ORL A;  1BHP A;  1JXW A;  2FD7 A;  1YV8 A;  1NBL A;  1JXT A;  2FD9 A;  1CCN A;  1JMP A;  2EYA A;  1YVA A;  3SZS A;  1ED0 A;  2V9B A;  1JMN A;  1JXU A;  1OKH A;  1JXY A;  1WUW A;  1JXX A;  2EYB A;  1CCM A;  1CBN A;  1CNR A;  3C8P A;  1CRN A;  2EYC A;  3NIR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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