1KQCA

Structure of nitroreductase from e. cloacae complex with inhibitor acetate
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
216
structure length
216
Chain Sequence
DIISVALKRHSTKAFDASKKLTAEEAEKIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGTYVFNERKMLDASHVVVFCAKTAMDDAWLERVVDQEEADGRFNTPEAKAANHKGRTYFADMHRVDLKDDDQWMAKQVYLNVGNFLLGVGAMGLDAVPIEGFDAAILDEEFGLKEKGFTSLVVVPVGHHSVEDFNATLPKSRLPLSTIVTEC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structures of nitroreductase in three states: effects of inhibitor binding and reduction.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Enterobacter cloacae
molecule keywords OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
total genus 73
structure length 216
sequence length 216
chains with identical sequence B, C, D
ec nomenclature ec 1.6.6.-:
pdb deposition date 2002-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1kqcA00
2ISKA 1ZCHA 3BM1A 4XOOA 4XOMA 5KRDA 3TO0A 2R01A 3X21A 2WZVA 1ICUA 3E10A 3PXVA 3N2SA 3QDLA 3GBHA 2WZWA 1OONA 1ICVA 2ISJA 1V5ZA 3HJ9A 5KO7A 4BN6A 1NOXA 2I7HA 2YMVA 3GB5A 2HAYA 3GH8A 4XOQA 1KQBA 1KQCA 4URPA 1OOQA 1YLRA 3EO8A 1OO5A 1BKJA 4G8SA 3GAGA 3KOQA 1NECA 3HOIA 3EK3A 2H0UA 2FREA 3G14A 2BKJA 3M5KA 1VKWA 1DS7A 3HZNA 3GE5A 1YKIA 4TTCA 3EO7A 5J6CA 1V5YA 3BEMA 3OF4A 2ISLA 3E39A 1OO6A 1YLUA 5HDJA 1YWQA 2B67A 3H4OA 1VFRA 4BNBA 5KO8A 3X22A 3GFAA 5HEIA 3GR3A 3K6HA 1IDTA 3GFDA 4QLYA 1F5VA 2IFAA 3TNZA 4DN2A 4BN9A 4BN7A 3BM2A 4TTBA 4EO3A 1KQDA 1ICRA 3EOFA 3GE6A 3KWKA 2WQFA 4QLXA 4BN8A
chains in the Genus database with same CATH superfamily
2ISKA 1ZCHA 3BM1A 4XOOA 4XOMA 5KRDA 3TO0A 2R01A 3X21A 2WZVA 1ICUA 3E10A 3PXVA 3N2SA 3QDLA 3GBHA 2WZWA 1OONA 1ICVA 2ISJA 1V5ZA 3HJ9A 5KO7A 4BN6A 1NOXA 2I7HA 2YMVA 3GB5A 2HAYA 3GH8A 4XOQA 1KQBA 1KQCA 4URPA 1OOQA 1YLRA 3EO8A 1OO5A 1BKJA 4G8SA 3GAGA 3KOQA 1NECA 3HOIA 3EK3A 2H0UA 2FREA 3G14A 2BKJA 3M5KA 1VKWA 1DS7A 3HZNA 3GE5A 1YKIA 4TTCA 3EO7A 5J6CA 1V5YA 3BEMA 3OF4A 2ISLA 3E39A 1OO6A 1YLUA 5HDJA 1YWQA 2B67A 3H4OA 1VFRA 1J6RA 4BNBA 5KO8A 3X22A 3GFAA 5HEIA 3GR3A 3K6HA 1IDTA 3GFDA 4QLYA 1F5VA 2IFAA 3TNZA 4DN2A 4BN9A 4BN7A 3BM2A 4TTBA 4EO3A 1KQDA 1ICRA 3EOFA 3GE6A 3KWKA 2WQFA 4QLXA 4BN8A
chains in the Genus database with same CATH topology
2ISKA 1ZCHA 3BM1A 4XOOA 4XOMA 5KRDA 3TO0A 2R01A 3X21A 2WZVA 1ICUA 3E10A 3PXVA 3N2SA 3QDLA 3GBHA 2WZWA 1OONA 1ICVA 2ISJA 1V5ZA 3HJ9A 5KO7A 4BN6A 1NOXA 2I7HA 2YMVA 3GB5A 2HAYA 3GH8A 4XOQA 1KQBA 1KQCA 4URPA 1OOQA 1YLRA 3EO8A 1OO5A 1BKJA 4G8SA 3GAGA 3KOQA 1NECA 3HOIA 3EK3A 2H0UA 2FREA 3G14A 2BKJA 3M5KA 1VKWA 1DS7A 3HZNA 3GE5A 1YKIA 4TTCA 3EO7A 5J6CA 1V5YA 3BEMA 3OF4A 2ISLA 3E39A 1OO6A 1YLUA 5HDJA 1YWQA 2B67A 3H4OA 1VFRA 1J6RA 4BNBA 5KO8A 3X22A 3GFAA 5HEIA 3GR3A 3K6HA 1IDTA 3GFDA 4QLYA 1F5VA 2IFAA 3TNZA 4DN2A 4BN9A 4BN7A 3BM2A 4TTBA 4EO3A 1KQDA 1ICRA 3EOFA 3GE6A 3KWKA 2WQFA 4QLXA 4BN8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2ISK A;  1ZCH A;  3BM1 A;  4XOO A;  4XOM A;  5KRD A;  3TO0 A;  2R01 A;  3X21 A;  2WZV A;  1ICU A;  3E10 A;  3PXV A;  3N2S A;  3QDL A;  3GBH A;  2WZW A;  1OON A;  1ICV A;  2ISJ A;  1V5Z A;  3HJ9 A;  5KO7 A;  4BN6 A;  1NOX A;  2I7H A;  2YMV A;  3GB5 A;  2HAY A;  3GH8 A;  4XOQ A;  1KQB A;  1KQC A;  4URP A;  1OOQ A;  1YLR A;  3EO8 A;  1OO5 A;  1BKJ A;  4G8S A;  3GAG A;  3KOQ A;  1NEC A;  3HOI A;  3EK3 A;  2H0U A;  2FRE A;  3G14 A;  2BKJ A;  3M5K A;  1VKW A;  1DS7 A;  3HZN A;  3GE5 A;  1YKI A;  4TTC A;  3EO7 A;  5J6C A;  1V5Y A;  3BEM A;  3OF4 A;  2ISL A;  3E39 A;  1OO6 A;  1YLU A;  5HDJ A;  1YWQ A;  2B67 A;  3H4O A;  1VFR A;  4BNB A;  5KO8 A;  3X22 A;  3GFA A;  5HEI A;  3GR3 A;  3K6H A;  1IDT A;  3GFD A;  4QLY A;  1F5V A;  2IFA A;  3TNZ A;  4DN2 A;  4BN9 A;  4BN7 A;  3BM2 A;  4TTB A;  4EO3 A;  1KQD A;  1ICR A;  3EOF A;  3GE6 A;  3KWK A;  2WQF A;  4QLX A;  4BN8 A; 
#chains in the Genus database with same CATH topology
 2ISK A;  1ZCH A;  3BM1 A;  4XOO A;  4XOM A;  5KRD A;  3TO0 A;  2R01 A;  3X21 A;  2WZV A;  1ICU A;  3E10 A;  3PXV A;  3N2S A;  3QDL A;  3GBH A;  2WZW A;  1OON A;  1ICV A;  2ISJ A;  1V5Z A;  3HJ9 A;  5KO7 A;  4BN6 A;  1NOX A;  2I7H A;  2YMV A;  3GB5 A;  2HAY A;  3GH8 A;  4XOQ A;  1KQB A;  1KQC A;  4URP A;  1OOQ A;  1YLR A;  3EO8 A;  1OO5 A;  1BKJ A;  4G8S A;  3GAG A;  3KOQ A;  1NEC A;  3HOI A;  3EK3 A;  2H0U A;  2FRE A;  3G14 A;  2BKJ A;  3M5K A;  1VKW A;  1DS7 A;  3HZN A;  3GE5 A;  1YKI A;  4TTC A;  3EO7 A;  5J6C A;  1V5Y A;  3BEM A;  3OF4 A;  2ISL A;  3E39 A;  1OO6 A;  1YLU A;  5HDJ A;  1YWQ A;  2B67 A;  3H4O A;  1VFR A;  1J6R A;  4BNB A;  5KO8 A;  3X22 A;  3GFA A;  5HEI A;  3GR3 A;  3K6H A;  1IDT A;  3GFD A;  4QLY A;  1F5V A;  2IFA A;  3TNZ A;  4DN2 A;  4BN9 A;  4BN7 A;  3BM2 A;  4TTB A;  4EO3 A;  1KQD A;  1ICR A;  3EOF A;  3GE6 A;  3KWK A;  2WQF A;  4QLX A;  4BN8 A; 
#chains in the Genus database with same CATH homology
 2ISK A;  1ZCH A;  3BM1 A;  4XOO A;  4XOM A;  5KRD A;  3TO0 A;  2R01 A;  3X21 A;  2WZV A;  1ICU A;  3E10 A;  3PXV A;  3N2S A;  3QDL A;  3GBH A;  2WZW A;  1OON A;  1ICV A;  2ISJ A;  1V5Z A;  3HJ9 A;  5KO7 A;  4BN6 A;  1NOX A;  2I7H A;  2YMV A;  3GB5 A;  2HAY A;  3GH8 A;  4XOQ A;  1KQB A;  1KQC A;  4URP A;  1OOQ A;  1YLR A;  3EO8 A;  1OO5 A;  1BKJ A;  4G8S A;  3GAG A;  3KOQ A;  1NEC A;  3HOI A;  3EK3 A;  2H0U A;  2FRE A;  3G14 A;  2BKJ A;  3M5K A;  1VKW A;  1DS7 A;  3HZN A;  3GE5 A;  1YKI A;  4TTC A;  3EO7 A;  5J6C A;  1V5Y A;  3BEM A;  3OF4 A;  2ISL A;  3E39 A;  1OO6 A;  1YLU A;  5HDJ A;  1YWQ A;  2B67 A;  3H4O A;  1VFR A;  1J6R A;  4BNB A;  5KO8 A;  3X22 A;  3GFA A;  5HEI A;  3GR3 A;  3K6H A;  1IDT A;  3GFD A;  4QLY A;  1F5V A;  2IFA A;  3TNZ A;  4DN2 A;  4BN9 A;  4BN7 A;  3BM2 A;  4TTB A;  4EO3 A;  1KQD A;  1ICR A;  3EOF A;  3GE6 A;  3KWK A;  2WQF A;  4QLX A;  4BN8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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