1KU8A

Crystal structure of jacalin
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)S11 (124-132)EMPTYS4 (37-44)TIV1 (33-36)S2 (11-19)TI1 (20-23)S7 (78-88)S3 (25-34)TVIa1 (59-62)TI2 (60-63)S8 (92-97)TI3 (88-91)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)O1 (98-100)TIV3 (120-123)S10 (112-120)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
publication title Structural basis for the unusual carbohydrate-binding specificity of jacalin towards galactose and mannose.
pubmed rcsb
molecule tags Sugar binding protein
molecule keywords JACALIN ALPHA CHAIN
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2002-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ku8A00
1JOTA 3VZGA 1WS4C 5J4XA 4AKDA 4R6RA 4DDNA 5EXGA 3MIVA 3VY6A 5BN6E 2BN0A 4MQ0A 1KUJA 2JZ4A 3LL2A 1UGWA 3WOCA 5J50A 2GUXA 4AKCA 1UGYA 3R51A 1X1VA 5JM1A 1XEZA 1UGWC 3MITA 2HYQA 3O44A 1J4SA 3LLYA 4PIKA 4R6NA 3VY7A 3R52A 1C3MA 1ZGSA 3R50A 3VZEA 4AK4A 4PITA 2GUDA 1UGYC 4R6PA 1UGXA 1OUWA 5AV7A 2GUEA 3AQGA 3P8SA 2BMYA 1UH0A 1M26A 2BMZA 4GX7A 1TOQA 1C3NA 4PIUA 1TP8A 3LL1A 3VZFA 1WS5A 1VBOA 2NU5A 4PIFA 1XXQA 1J4UA 1UH1A 1PXDA 5J51A 1ZGRA 2GTYA 4AKBA 1J4TA 1JACA 2NUOA 3LLZA 1WS4A 4R6QA 1WS5C 3WOBA 4R6OA 5J4TA 1C3KA 3LL0A 1XXRA 3APAA 1KU8A 4WOGA 2GUCA 2HYRA 3LKYA 3MIUA 3LM1A 1VBPA
chains in the Genus database with same CATH superfamily
1JOTA 3VZGA 1WS4C 5J4XA 4AKDA 4R6RA 4DDNA 5EXGA 3MIVA 3VY6A 5BN6E 2BN0A 4MQ0A 1KUJA 2JZ4A 3LL2A 1UGWA 3WOCA 5J50A 2GUXA 1JI6A 4AKCA 4ARXA 1UGYA 3R51A 1X1VA 5JM1A 1XEZA 1UGWC 2C9KA 3MITA 2HYQA 3O44A 1J4SA 3LLYA 4PIKA 4R6NA 2QP2A 4QX0A 3VY7A 3R52A 1DLCA 1C3MA 1ZGSA 3R50A 3VZEA 4AK4A 4PITA 2GUDA 1UGYC 4R6PA 1UGXA 1OUWA 5AV7A 4W8JA 4ARYA 1W99A 2GUEA 3AQGA 3P8SA 2BMYA 3TOWA 1UH0A 1M26A 4MOAA 2BMZA 4GX7A 1TOQA 1C3NA 4PIUA 1TP8A 3LL1A 3VZFA 1CIYA 1VMOA 4QX3A 1WS5A 1VBOA 2NU5A 4PIFA 4D8MA 1XXQA 1J4UA 1UH1A 1PXDA 5J51A 1ZGRA 2GTYA 4AKBA 1J4TA 1I5PA 1JACA 2NUOA 3LLZA 1WS4A 4QX1A 4R6QA 1WS5C 3WOBA 3EB7A 4QX2A 4R6OA 5J4TA 1C3KA 3LL0A 1XXRA 3APAA 1KU8A 4WOGA 2GUCA 2HYRA 3LKYA 3MIUA 3LM1A 1VBPA
chains in the Genus database with same CATH topology
1JOTA 3VZGA 1WS4C 5J4XA 4AKDA 4R6RA 4DDNA 5EXGA 3MIVA 3VY6A 5BN6E 2BN0A 4MQ0A 1KUJA 2JZ4A 3LL2A 1UGWA 3WOCA 5J50A 2GUXA 4AKCA 1UGYA 3R51A 1X1VA 5JM1A 1XEZA 1UGWC 3MITA 2HYQA 3O44A 1J4SA 3LLYA 4PIKA 4R6NA 3VY7A 3R52A 1C3MA 1ZGSA 3R50A 3VZEA 4AK4A 4PITA 2GUDA 1UGYC 4R6PA 1UGXA 1OUWA 5AV7A 2GUEA 3AQGA 3P8SA 2BMYA 1UH0A 1M26A 2BMZA 4GX7A 1TOQA 1C3NA 4PIUA 1TP8A 3LL1A 3VZFA 1WS5A 1VBOA 2NU5A 4PIFA 1XXQA 1J4UA 1UH1A 1PXDA 5J51A 1ZGRA 2GTYA 4AKBA 1J4TA 1JACA 2NUOA 3LLZA 1WS4A 4R6QA 1WS5C 3WOBA 4R6OA 5J4TA 1C3KA 3LL0A 1XXRA 3APAA 1KU8A 4WOGA 2GUCA 2HYRA 3LKYA 3MIUA 3LM1A 1VBPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JOT A;  3VZG A;  1WS4 C;  5J4X A;  4AKD A;  4R6R A;  4DDN A;  5EXG A;  3MIV A;  3VY6 A;  5BN6 E;  2BN0 A;  4MQ0 A;  1KUJ A;  2JZ4 A;  3LL2 A;  1UGW A;  3WOC A;  5J50 A;  2GUX A;  4AKC A;  1UGY A;  3R51 A;  1X1V A;  5JM1 A;  1XEZ A;  1UGW C;  3MIT A;  2HYQ A;  3O44 A;  1J4S A;  3LLY A;  4PIK A;  4R6N A;  3VY7 A;  3R52 A;  1C3M A;  1ZGS A;  3R50 A;  3VZE A;  4AK4 A;  4PIT A;  2GUD A;  1UGY C;  4R6P A;  1UGX A;  1OUW A;  5AV7 A;  2GUE A;  3AQG A;  3P8S A;  2BMY A;  1UH0 A;  1M26 A;  2BMZ A;  4GX7 A;  1TOQ A;  1C3N A;  4PIU A;  1TP8 A;  3LL1 A;  3VZF A;  1WS5 A;  1VBO A;  2NU5 A;  4PIF A;  1XXQ A;  1J4U A;  1UH1 A;  1PXD A;  5J51 A;  1ZGR A;  2GTY A;  4AKB A;  1J4T A;  1JAC A;  2NUO A;  3LLZ A;  1WS4 A;  4R6Q A;  1WS5 C;  3WOB A;  4R6O A;  5J4T A;  1C3K A;  3LL0 A;  1XXR A;  3APA A;  1KU8 A;  4WOG A;  2GUC A;  2HYR A;  3LKY A;  3MIU A;  3LM1 A;  1VBP A; 
#chains in the Genus database with same CATH topology
 1JOT A;  3VZG A;  1WS4 C;  5J4X A;  4AKD A;  4R6R A;  4DDN A;  5EXG A;  3MIV A;  3VY6 A;  5BN6 E;  2BN0 A;  4MQ0 A;  1KUJ A;  2JZ4 A;  3LL2 A;  1UGW A;  3WOC A;  5J50 A;  2GUX A;  1JI6 A;  4AKC A;  4ARX A;  1UGY A;  3R51 A;  1X1V A;  5JM1 A;  1XEZ A;  1UGW C;  2C9K A;  3MIT A;  2HYQ A;  3O44 A;  1J4S A;  3LLY A;  4PIK A;  4R6N A;  2QP2 A;  4QX0 A;  3VY7 A;  3R52 A;  1DLC A;  1C3M A;  1ZGS A;  3R50 A;  3VZE A;  4AK4 A;  4PIT A;  2GUD A;  1UGY C;  4R6P A;  1UGX A;  1OUW A;  5AV7 A;  4W8J A;  4ARY A;  1W99 A;  2GUE A;  3AQG A;  3P8S A;  2BMY A;  3TOW A;  1UH0 A;  1M26 A;  4MOA A;  2BMZ A;  4GX7 A;  1TOQ A;  1C3N A;  4PIU A;  1TP8 A;  3LL1 A;  3VZF A;  1CIY A;  1VMO A;  4QX3 A;  1WS5 A;  1VBO A;  2NU5 A;  4PIF A;  4D8M A;  1XXQ A;  1J4U A;  1UH1 A;  1PXD A;  5J51 A;  1ZGR A;  2GTY A;  4AKB A;  1J4T A;  1I5P A;  1JAC A;  2NUO A;  3LLZ A;  1WS4 A;  4QX1 A;  4R6Q A;  1WS5 C;  3WOB A;  3EB7 A;  4QX2 A;  4R6O A;  5J4T A;  1C3K A;  3LL0 A;  1XXR A;  3APA A;  1KU8 A;  4WOG A;  2GUC A;  2HYR A;  3LKY A;  3MIU A;  3LM1 A;  1VBP A; 
#chains in the Genus database with same CATH homology
 1JOT A;  3VZG A;  1WS4 C;  5J4X A;  4AKD A;  4R6R A;  4DDN A;  5EXG A;  3MIV A;  3VY6 A;  5BN6 E;  2BN0 A;  4MQ0 A;  1KUJ A;  2JZ4 A;  3LL2 A;  1UGW A;  3WOC A;  5J50 A;  2GUX A;  4AKC A;  1UGY A;  3R51 A;  1X1V A;  5JM1 A;  1XEZ A;  1UGW C;  3MIT A;  2HYQ A;  3O44 A;  1J4S A;  3LLY A;  4PIK A;  4R6N A;  3VY7 A;  3R52 A;  1C3M A;  1ZGS A;  3R50 A;  3VZE A;  4AK4 A;  4PIT A;  2GUD A;  1UGY C;  4R6P A;  1UGX A;  1OUW A;  5AV7 A;  2GUE A;  3AQG A;  3P8S A;  2BMY A;  1UH0 A;  1M26 A;  2BMZ A;  4GX7 A;  1TOQ A;  1C3N A;  4PIU A;  1TP8 A;  3LL1 A;  3VZF A;  1WS5 A;  1VBO A;  2NU5 A;  4PIF A;  1XXQ A;  1J4U A;  1UH1 A;  1PXD A;  5J51 A;  1ZGR A;  2GTY A;  4AKB A;  1J4T A;  1JAC A;  2NUO A;  3LLZ A;  1WS4 A;  4R6Q A;  1WS5 C;  3WOB A;  4R6O A;  5J4T A;  1C3K A;  3LL0 A;  1XXR A;  3APA A;  1KU8 A;  4WOG A;  2GUC A;  2HYR A;  3LKY A;  3MIU A;  3LM1 A;  1VBP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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