1KU8 | Genus

Total Genus 29

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structural basis for the unusual carbohydrate-binding specificity of jacalin towards galactose and mannose. pubmed rcsb
molecule keywords	JACALIN ALPHA CHAIN
total genus	29
structure length	133
sequence length	133
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2002-01-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1ku8A00

1KUJA 1UGYC 3VZFA 1PXDA 1C3MA 4AKCA 3LLZA 4R6NA 1M26A 1UGXA 3LKYA 2GUXA 4AK4A 2GUDA 3LL2A 1WS4A 1J4TA 2BMZA 2BN0A 3MITA 1UGYA 3LL1A 5BN6E 3VZGA 5J50A 1KU8A 1J4SA 3AQGA 2GUEA 5JM1A 1TP8A 2JZ4A 3LLYA 5EXGA 1UH0A 1UH1A 4AKDA 1XEZA 1C3NA 4R6QA 3APAA 1JOTA 3MIUA 4R6PA 4GX7A 5AV7A 1XXQA 4PITA 3R51A 3R50A 4PIUA 1WS5C 1JACA 3VZEA 5J4TA 1J4UA 1ZGSA 3MIVA 3WOCA 4AKBA 1WS5A 3LL0A 1X1VA 4PIFA 1OUWA 1VBPA 5J51A 1XXRA 1UGWC 3R52A 2HYQA 5J4XA 3LM1A 1C3KA 1TOQA 3P8SA 4R6RA 3WOBA 4DDNA 2BMYA 3O44A 2NU5A 1UGWA 1VBOA 2GUCA 4PIKA 4WOGA 2GTYA 3VY6A 4MQ0A 2HYRA 1ZGRA 2NUOA 3VY7A 1WS4C 4R6OA
chains in the Genus database with same CATH superfamily

1KUJA 1UGYC 3VZFA 1PXDA 1C3MA 4AKCA 3LLZA 4R6NA 1M26A 1UGXA 3LKYA 2GUXA 2QP2A 4AK4A 1I5PA 2GUDA 3LL2A 1WS4A 1J4TA 2BMZA 2BN0A 3MITA 1UGYA 3LL1A 5BN6E 3VZGA 5J50A 1KU8A 4QX2A 1J4SA 3AQGA 1VMOA 2GUEA 5JM1A 1TP8A 2JZ4A 4QX0A 3LLYA 5EXGA 1UH0A 1UH1A 4AKDA 1XEZA 1C3NA 4R6QA 3APAA 1JOTA 3MIUA 4ARYA 1CIYA 4QX3A 4R6PA 3EB7A 2C9KA 4GX7A 5AV7A 1XXQA 4PITA 4QX1A 3R51A 3R50A 4PIUA 1WS5C 1JACA 3VZEA 5J4TA 1J4UA 1ZGSA 3MIVA 1JI6A 3WOCA 4ARXA 1DLCA 4D8MA 4AKBA 1WS5A 3LL0A 1X1VA 4PIFA 1OUWA 1VBPA 5J51A 1XXRA 1UGWC 3R52A 2HYQA 5J4XA 3LM1A 1C3KA 1TOQA 3P8SA 4W8JA 3TOWA 4R6RA 3WOBA 4DDNA 2BMYA 3O44A 2NU5A 1UGWA 1VBOA 2GUCA 4PIKA 4WOGA 2GTYA 3VY6A 4MQ0A 2HYRA 1W99A 1ZGRA 2NUOA 3VY7A 1WS4C 4MOAA 4R6OA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1KUJ A;  1UGY C;  3VZF A;  1PXD A;  1C3M A;  4AKC A;  3LLZ A;  4R6N A;  1M26 A;  1UGX A;  3LKY A;  2GUX A;  4AK4 A;  2GUD A;  3LL2 A;  1WS4 A;  1J4T A;  2BMZ A;  2BN0 A;  3MIT A;  1UGY A;  3LL1 A;  5BN6 E;  3VZG A;  5J50 A;  1KU8 A;  1J4S A;  3AQG A;  2GUE A;  5JM1 A;  1TP8 A;  2JZ4 A;  3LLY A;  5EXG A;  1UH0 A;  1UH1 A;  4AKD A;  1XEZ A;  1C3N A;  4R6Q A;  3APA A;  1JOT A;  3MIU A;  4R6P A;  4GX7 A;  5AV7 A;  1XXQ A;  4PIT A;  3R51 A;  3R50 A;  4PIU A;  1WS5 C;  1JAC A;  3VZE A;  5J4T A;  1J4U A;  1ZGS A;  3MIV A;  3WOC A;  4AKB A;  1WS5 A;  3LL0 A;  1X1V A;  4PIF A;  1OUW A;  1VBP A;  5J51 A;  1XXR A;  1UGW C;  3R52 A;  2HYQ A;  5J4X A;  3LM1 A;  1C3K A;  1TOQ A;  3P8S A;  4R6R A;  3WOB A;  4DDN A;  2BMY A;  3O44 A;  2NU5 A;  1UGW A;  1VBO A;  2GUC A;  4PIK A;  4WOG A;  2GTY A;  3VY6 A;  4MQ0 A;  2HYR A;  1ZGR A;  2NUO A;  3VY7 A;  1WS4 C;  4R6O A; 
#chains in the Genus database with same CATH topology
 1KUJ A;  1UGY C;  3VZF A;  1PXD A;  1C3M A;  4AKC A;  3LLZ A;  4R6N A;  1M26 A;  1UGX A;  3LKY A;  2GUX A;  2QP2 A;  4AK4 A;  1I5P A;  2GUD A;  3LL2 A;  1WS4 A;  1J4T A;  2BMZ A;  2BN0 A;  3MIT A;  1UGY A;  3LL1 A;  5BN6 E;  3VZG A;  5J50 A;  1KU8 A;  4QX2 A;  1J4S A;  3AQG A;  1VMO A;  2GUE A;  5JM1 A;  1TP8 A;  2JZ4 A;  4QX0 A;  3LLY A;  5EXG A;  1UH0 A;  1UH1 A;  4AKD A;  1XEZ A;  1C3N A;  4R6Q A;  3APA A;  1JOT A;  3MIU A;  4ARY A;  1CIY A;  4QX3 A;  4R6P A;  3EB7 A;  2C9K A;  4GX7 A;  5AV7 A;  1XXQ A;  4PIT A;  4QX1 A;  3R51 A;  3R50 A;  4PIU A;  1WS5 C;  1JAC A;  3VZE A;  5J4T A;  1J4U A;  1ZGS A;  3MIV A;  1JI6 A;  3WOC A;  4ARX A;  1DLC A;  4D8M A;  4AKB A;  1WS5 A;  3LL0 A;  1X1V A;  4PIF A;  1OUW A;  1VBP A;  5J51 A;  1XXR A;  1UGW C;  3R52 A;  2HYQ A;  5J4X A;  3LM1 A;  1C3K A;  1TOQ A;  3P8S A;  4W8J A;  3TOW A;  4R6R A;  3WOB A;  4DDN A;  2BMY A;  3O44 A;  2NU5 A;  1UGW A;  1VBO A;  2GUC A;  4PIK A;  4WOG A;  2GTY A;  3VY6 A;  4MQ0 A;  2HYR A;  1W99 A;  1ZGR A;  2NUO A;  3VY7 A;  1WS4 C;  4MOA A;  4R6O A; 
#chains in the Genus database with same CATH homology
 1KUJ A;  1UGY C;  3VZF A;  1PXD A;  1C3M A;  4AKC A;  3LLZ A;  4R6N A;  1M26 A;  1UGX A;  3LKY A;  2GUX A;  4AK4 A;  2GUD A;  3LL2 A;  1WS4 A;  1J4T A;  2BMZ A;  2BN0 A;  3MIT A;  1UGY A;  3LL1 A;  5BN6 E;  3VZG A;  5J50 A;  1KU8 A;  1J4S A;  3AQG A;  2GUE A;  5JM1 A;  1TP8 A;  2JZ4 A;  3LLY A;  5EXG A;  1UH0 A;  1UH1 A;  4AKD A;  1XEZ A;  1C3N A;  4R6Q A;  3APA A;  1JOT A;  3MIU A;  4R6P A;  4GX7 A;  5AV7 A;  1XXQ A;  4PIT A;  3R51 A;  3R50 A;  4PIU A;  1WS5 C;  1JAC A;  3VZE A;  5J4T A;  1J4U A;  1ZGS A;  3MIV A;  3WOC A;  4AKB A;  1WS5 A;  3LL0 A;  1X1V A;  4PIF A;  1OUW A;  1VBP A;  5J51 A;  1XXR A;  1UGW C;  3R52 A;  2HYQ A;  5J4X A;  3LM1 A;  1C3K A;  1TOQ A;  3P8S A;  4R6R A;  3WOB A;  4DDN A;  2BMY A;  3O44 A;  2NU5 A;  1UGW A;  1VBO A;  2GUC A;  4PIK A;  4WOG A;  2GTY A;  3VY6 A;  4MQ0 A;  2HYR A;  1ZGR A;  2NUO A;  3VY7 A;  1WS4 C;  4R6O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1KU8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations