1NKQ | Genus

Total Genus 65

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	65
sequence length	257
structure length	247
Chain Sequence	SYNYLKAARKIICIGRNYAAHIKELNNQPFFFLKPTSSIVTPLSSSPANSTFNGLNEDGTNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIILTGTPAGVGELKPGDRVHCELLQNNDNIVDMNFECENRPGPYEFRE

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crtystal Structure of Yeast Hypothetical Protein YNQ8_YEAST rcsb
molecule keywords	Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region
molecule tags	Structural genomics, unknown function
source organism	Saccharomyces cerevisiae
total genus	65
structure length	247
sequence length	257
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2003-01-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	1nkqA00

2WQTA 1NKQA 4DBFA 2EB5A 2EB6A 1GTTA 3S52A 2EB4A 5D2FA 3LZKA 2DFUA 1SV6A 1QQJA 1SAWA 3BQBA 2Q19X 3V77A 1WZOA 1I7OA 1QCNA 4DBHA 2HZYA 3RR6A 2Q1AX 3QDFA 5D2HA 3R6OA 4PFZA 5D2IA 5D2GA 4MAQA 2Q1DX 1QCOA 1HYOA 2Q18X 5D2KA 5D2JA 1NR9A 4QKUA 2Q1CX
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2WQT A;  1NKQ A;  4DBF A;  2EB5 A;  2EB6 A;  1GTT A;  3S52 A;  2EB4 A;  5D2F A;  3LZK A;  2DFU A;  1SV6 A;  1QQJ A;  1SAW A;  3BQB A;  2Q19 X;  3V77 A;  1WZO A;  1I7O A;  1QCN A;  4DBH A;  2HZY A;  3RR6 A;  2Q1A X;  3QDF A;  5D2H A;  3R6O A;  4PFZ A;  5D2I A;  5D2G A;  4MAQ A;  2Q1D X;  1QCO A;  1HYO A;  2Q18 X;  5D2K A;  5D2J A;  1NR9 A;  4QKU A;  2Q1C X; 
#chains in the Genus database with same CATH topology
 2WQT A;  1NKQ A;  4DBF A;  2EB5 A;  2EB6 A;  1GTT A;  3S52 A;  2EB4 A;  5D2F A;  3LZK A;  2DFU A;  1SV6 A;  1QQJ A;  1SAW A;  3BQB A;  2Q19 X;  3V77 A;  1WZO A;  1I7O A;  1QCN A;  4DBH A;  2HZY A;  3RR6 A;  2Q1A X;  3QDF A;  5D2H A;  3R6O A;  4PFZ A;  5D2I A;  5D2G A;  4MAQ A;  2Q1D X;  1QCO A;  1HYO A;  2Q18 X;  5D2K A;  5D2J A;  1NR9 A;  4QKU A;  2Q1C X; 
#chains in the Genus database with same CATH homology
 2WQT A;  1NKQ A;  4DBF A;  2EB5 A;  2EB6 A;  1GTT A;  3S52 A;  2EB4 A;  5D2F A;  3LZK A;  2DFU A;  1SV6 A;  1QQJ A;  1SAW A;  3BQB A;  2Q19 X;  3V77 A;  1WZO A;  1I7O A;  1QCN A;  4DBH A;  2HZY A;  3RR6 A;  2Q1A X;  3QDF A;  5D2H A;  3R6O A;  4PFZ A;  5D2I A;  5D2G A;  4MAQ A;  2Q1D X;  1QCO A;  1HYO A;  2Q18 X;  5D2K A;  5D2J A;  1NR9 A;  4QKU A;  2Q1C X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NKQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations