2Q1CX

2-keto-3-deoxy-d-arabinonate dehydratase complexed with calcium and 2-oxobutyrate
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
291
structure length
291
Chain Sequence
b'MKLFRVVKRGYYISYAILDNSTIIRLDEDPIKALMRYSENKEVLGDRVTGIDYQSLLKSFQINDIRITKPIDPPEVWGSGISYEMARERYSEENVAKILGKTIYEKVYDAVRPEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGKILGYTIMDDVSARDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIPDGTILTTGTAIVPGRDKGLKDEDIVEITISNIGTLITPVKKRRK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 2-keto-3-deoxy-D-arabinonate dehydratase
publication title Structural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
pubmed doi rcsb
source organism Sulfolobus solfataricus
molecule tags Lyase
total genus 74
structure length 291
sequence length 291
ec nomenclature ec 4.2.1.141: 2-dehydro-3-deoxy-D-arabinonate dehydratase.
pdb deposition date 2007-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF01557 FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.330.40 Alpha Beta Roll Vcp-like ATPase; Chain A, domain 2 Vcp-like ATPase; Chain A, domain 2 2q1cX01
3.90.850.10 Alpha Beta Alpha-Beta Complex Fumarylacetoacetate hydrolase; domain 2 Fumarylacetoacetase-like, C-terminal domain 2q1cX02
2Q1CX 1HYOA 2Q1DX 1GTTA 4QKUA 2WQTA 5D2GA 2EB6A 5D2JA 5D2IA 1QCNA 3R6OA 3QDFA 5D2HA 5D2FA 1QCOA 1SV6A 1NKQA 1SAWA 1NR9A 3LZKA 3BQBA 4DBHA 5D2KA 2Q18X 2HZYA 4MAQA 4PFZA 3S52A 1I7OA 2EB4A 2Q19X 1QQJA 2Q1AX 4DBFA 3V77A 1WZOA 3RR6A 2DFUA 2EB5A
chains in the Genus database with same CATH superfamily
3ZJVA 3ZGZA 4AQ7A 3ZJTA 1GTTA 3TIWA 1QCSA 2YVLA 1QCNA 3QDFA 5D2HA 5D2FA 2QQSA 3QQ8A 1SAWA 4FIBA 3LZKA 5CD1A 3CF2A 3HU3A 2HZYA 2PWYA 5C1BA 4DBFA 2GFAA 3QQ7A 4RV0A 4AS1A 2XDPA 3LHDA 5FTJA 3HU1A 2DFUA 1CZ4A 1WLFA 1CZ5A 1QDNA 3QC8A 1O54A 2B25A 2MM0A 1R7RA 2EB6A 3HU2A 2PJHB 1SV6A 1NR9A 4DBHA 3FPRA 3S52A 5D6YA 5GLFA 2Q1AX 4KO8A 2LW6A 3RR6A 4ARCA 2QQRA 2EB5A 2JV2A 2Q1CX 5CCXA 2Q1DX 4QKUA 5D6WA 2WQTA 5D2GA 4KODA 1E32A 1I9GA 1S3SA 1QCOA 3FPTA 5C18A 1CR5A 3BQBA 5DYGA 4UC4A 4CQNA 4KDLA 5D2KA 4MAQA 2EB4A 2Q19X 1QQJA 5DYIA 3V77A 3ZJUA 1WZOA 5FTNA 5FTKA 2MM2A 2YUJA 3QWZA 1ZC1A 4KLNA 1HYOA 3MB5A 5CCBA 2KY9A 5D2JA 5B6CA 3R6OA 5D2IA 4ARIA 1NKQA 2GF7A 2Q18X 5D6XA 4KDIA 5EPPA 5FTMA 4PFZA 1I7OA 5EQJB 3FPUA 5FTLA 5ERGB 3LGAA
chains in the Genus database with same CATH topology
3ZJVA 3ZGZA 4AQ7A 3ZJTA 1GTTA 3TIWA 1QCSA 2YVLA 1QCNA 3QDFA 5D2HA 5D2FA 2QQSA 3QQ8A 1SAWA 4FIBA 3LZKA 5CD1A 3CF2A 3HU3A 2HZYA 2PWYA 5C1BA 4DBFA 2GFAA 3QQ7A 4RV0A 4AS1A 2XDPA 3LHDA 5FTJA 3HU1A 2DFUA 1CZ4A 1WLFA 1CZ5A 1QDNA 3QC8A 1O54A 2B25A 2MM0A 1R7RA 2EB6A 3HU2A 2PJHB 1SV6A 1NR9A 4DBHA 3FPRA 3S52A 5D6YA 5GLFA 2Q1AX 4KO8A 2LW6A 3RR6A 4ARCA 2QQRA 2EB5A 2JV2A 2Q1CX 5CCXA 2Q1DX 4QKUA 5D6WA 2WQTA 5D2GA 4KODA 1E32A 1I9GA 1S3SA 1QCOA 3FPTA 5C18A 1CR5A 3BQBA 5DYGA 4UC4A 4CQNA 4KDLA 5D2KA 4MAQA 2EB4A 2Q19X 1QQJA 5DYIA 3V77A 3ZJUA 1WZOA 5FTNA 5FTKA 2MM2A 2YUJA 3QWZA 1ZC1A 4KLNA 1HYOA 3MB5A 5CCBA 2KY9A 5D2JA 5B6CA 3R6OA 5D2IA 4ARIA 1NKQA 2GF7A 2Q18X 5D6XA 4KDIA 5EPPA 5FTMA 4PFZA 1I7OA 5EQJB 3FPUA 5FTLA 5ERGB 3LGAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Q1C X;  1HYO A;  2Q1D X;  1GTT A;  4QKU A;  2WQT A;  5D2G A;  2EB6 A;  5D2J A;  5D2I A;  1QCN A;  3R6O A;  3QDF A;  5D2H A;  5D2F A;  1QCO A;  1SV6 A;  1NKQ A;  1SAW A;  1NR9 A;  3LZK A;  3BQB A;  4DBH A;  5D2K A;  2Q18 X;  2HZY A;  4MAQ A;  4PFZ A;  3S52 A;  1I7O A;  2EB4 A;  2Q19 X;  1QQJ A;  2Q1A X;  4DBF A;  3V77 A;  1WZO A;  3RR6 A;  2DFU A;  2EB5 A; 
#chains in the Genus database with same CATH topology
 3ZJV A;  3ZGZ A;  4AQ7 A;  3ZJT A;  1GTT A;  3TIW A;  1QCS A;  2YVL A;  1QCN A;  3QDF A;  5D2H A;  5D2F A;  2QQS A;  3QQ8 A;  1SAW A;  4FIB A;  3LZK A;  5CD1 A;  3CF2 A;  3HU3 A;  2HZY A;  2PWY A;  5C1B A;  4DBF A;  2GFA A;  3QQ7 A;  4RV0 A;  4AS1 A;  2XDP A;  3LHD A;  5FTJ A;  3HU1 A;  2DFU A;  1CZ4 A;  1WLF A;  1CZ5 A;  1QDN A;  3QC8 A;  1O54 A;  2B25 A;  2MM0 A;  1R7R A;  2EB6 A;  3HU2 A;  2PJH B;  1SV6 A;  1NR9 A;  4DBH A;  3FPR A;  3S52 A;  5D6Y A;  5GLF A;  2Q1A X;  4KO8 A;  2LW6 A;  3RR6 A;  4ARC A;  2QQR A;  2EB5 A;  2JV2 A;  2Q1C X;  5CCX A;  2Q1D X;  4QKU A;  5D6W A;  2WQT A;  5D2G A;  4KOD A;  1E32 A;  1I9G A;  1S3S A;  1QCO A;  3FPT A;  5C18 A;  1CR5 A;  3BQB A;  5DYG A;  4UC4 A;  4CQN A;  4KDL A;  5D2K A;  4MAQ A;  2EB4 A;  2Q19 X;  1QQJ A;  5DYI A;  3V77 A;  3ZJU A;  1WZO A;  5FTN A;  5FTK A;  2MM2 A;  2YUJ A;  3QWZ A;  1ZC1 A;  4KLN A;  1HYO A;  3MB5 A;  5CCB A;  2KY9 A;  5D2J A;  5B6C A;  3R6O A;  5D2I A;  4ARI A;  1NKQ A;  2GF7 A;  2Q18 X;  5D6X A;  4KDI A;  5EPP A;  5FTM A;  4PFZ A;  1I7O A;  5EQJ B;  3FPU A;  5FTL A;  5ERG B;  3LGA A; 
#chains in the Genus database with same CATH homology
 3ZJV A;  3ZGZ A;  4AQ7 A;  3ZJT A;  1GTT A;  3TIW A;  1QCS A;  2YVL A;  1QCN A;  3QDF A;  5D2H A;  5D2F A;  2QQS A;  3QQ8 A;  1SAW A;  4FIB A;  3LZK A;  5CD1 A;  3CF2 A;  3HU3 A;  2HZY A;  2PWY A;  5C1B A;  4DBF A;  2GFA A;  3QQ7 A;  4RV0 A;  4AS1 A;  2XDP A;  3LHD A;  5FTJ A;  3HU1 A;  2DFU A;  1CZ4 A;  1WLF A;  1CZ5 A;  1QDN A;  3QC8 A;  1O54 A;  2B25 A;  2MM0 A;  1R7R A;  2EB6 A;  3HU2 A;  2PJH B;  1SV6 A;  1NR9 A;  4DBH A;  3FPR A;  3S52 A;  5D6Y A;  5GLF A;  2Q1A X;  4KO8 A;  2LW6 A;  3RR6 A;  4ARC A;  2QQR A;  2EB5 A;  2JV2 A;  2Q1C X;  5CCX A;  2Q1D X;  4QKU A;  5D6W A;  2WQT A;  5D2G A;  4KOD A;  1E32 A;  1I9G A;  1S3S A;  1QCO A;  3FPT A;  5C18 A;  1CR5 A;  3BQB A;  5DYG A;  4UC4 A;  4CQN A;  4KDL A;  5D2K A;  4MAQ A;  2EB4 A;  2Q19 X;  1QQJ A;  5DYI A;  3V77 A;  3ZJU A;  1WZO A;  5FTN A;  5FTK A;  2MM2 A;  2YUJ A;  3QWZ A;  1ZC1 A;  4KLN A;  1HYO A;  3MB5 A;  5CCB A;  2KY9 A;  5D2J A;  5B6C A;  3R6O A;  5D2I A;  4ARI A;  1NKQ A;  2GF7 A;  2Q18 X;  5D6X A;  4KDI A;  5EPP A;  5FTM A;  4PFZ A;  1I7O A;  5EQJ B;  3FPU A;  5FTL A;  5ERG B;  3LGA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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