1NLWA

Crystal structure of mad-max recognizing dna
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
79
structure length
79
Chain Sequence
SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (40-79)O1 (29-31)TIV1 (32-35)AH1 (3-26)EMPTYUpdating...
connected with : NaN
publication title X-ray structures of Myc-Max and Mad-Max recognizing DNA: Molecular bases of regulation by proto-oncogenic transcription factors
pubmed doi rcsb
molecule tags Transcription/dna
source organism Homo sapiens
molecule keywords 5'-D(*GP*AP*GP*TP*AP*GP*CP*AP*CP*GP*TP*GP*CP*TP*AP*CP*TP*C)-
total genus 29
structure length 79
sequence length 79
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00010 HLH Helix-loop-helix DNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.280.10 Few Secondary Structures Irregular MYOD Basic-Helix-Loop-Helix Domain, subunit B Helix-loop-helix DNA-binding domain 1nlwA00
1R05A 1NLWB 1NKPA 2YPBA 5I4ZA 2QL2B 1HLOA 1AN4A 2YPAA 4H10A 3MUJA 3U5VA 1MDYA 4ATKA 5I50A 2MH3A 4F3LA 1AM9A 2YPBB 1NKPB 1NLWA 2YPAB 4H10B 2QL2A 4AYAA 4ATHA 5EYOA 1UKLC 4ATIA 1AN2A 1MDYB 4F3LB 2LFHA 1A0AA
chains in the Genus database with same CATH superfamily
1ZZAA 1R05A 1NLWB 1NKPA 2YPBA 5I4ZA 2QL2B 1HLOA 1AN4A 2YPAA 4H10A 3MUJA 3U5VA 1MDYA 4ATKA 5I50A 2MH3A 4F3LA 1AM9A 2YPBB 1NKPB 1NLWA 2YPAB 4H10B 2QL2A 1K1FA 4AYAA 4ATHA 5EYOA 1UKLC 4ATIA 1AN2A 1MDYB 4F3LB 2LFHA 1A0AA
chains in the Genus database with same CATH topology
1R05A 1NLWB 1NKPA 2YPBA 5I4ZA 2QL2B 1HLOA 1AN4A 2YPAA 4H10A 3MUJA 3U5VA 1MDYA 4ATKA 5I50A 2MH3A 4F3LA 1AM9A 2YPBB 1NKPB 1NLWA 2YPAB 4H10B 2QL2A 4AYAA 4ATHA 5EYOA 1UKLC 4ATIA 1AN2A 1MDYB 4F3LB 2LFHA 1A0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R05 A;  1NLW B;  1NKP A;  2YPB A;  5I4Z A;  2QL2 B;  1HLO A;  1AN4 A;  2YPA A;  4H10 A;  3MUJ A;  3U5V A;  1MDY A;  4ATK A;  5I50 A;  2MH3 A;  4F3L A;  1AM9 A;  2YPB B;  1NKP B;  1NLW A;  2YPA B;  4H10 B;  2QL2 A;  4AYA A;  4ATH A;  5EYO A;  1UKL C;  4ATI A;  1AN2 A;  1MDY B;  4F3L B;  2LFH A;  1A0A A; 
#chains in the Genus database with same CATH topology
 1ZZA A;  1R05 A;  1NLW B;  1NKP A;  2YPB A;  5I4Z A;  2QL2 B;  1HLO A;  1AN4 A;  2YPA A;  4H10 A;  3MUJ A;  3U5V A;  1MDY A;  4ATK A;  5I50 A;  2MH3 A;  4F3L A;  1AM9 A;  2YPB B;  1NKP B;  1NLW A;  2YPA B;  4H10 B;  2QL2 A;  1K1F A;  4AYA A;  4ATH A;  5EYO A;  1UKL C;  4ATI A;  1AN2 A;  1MDY B;  4F3L B;  2LFH A;  1A0A A; 
#chains in the Genus database with same CATH homology
 1R05 A;  1NLW B;  1NKP A;  2YPB A;  5I4Z A;  2QL2 B;  1HLO A;  1AN4 A;  2YPA A;  4H10 A;  3MUJ A;  3U5V A;  1MDY A;  4ATK A;  5I50 A;  2MH3 A;  4F3L A;  1AM9 A;  2YPB B;  1NKP B;  1NLW A;  2YPA B;  4H10 B;  2QL2 A;  4AYA A;  4ATH A;  5EYO A;  1UKL C;  4ATI A;  1AN2 A;  1MDY B;  4F3L B;  2LFH A;  1A0A A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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