4H10A

Intermolecular recognition revealed by the complex structure of human clock-bmal1 basic helix-loop-helix domains with e-box dna
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
60
structure length
60
Chain Sequence
RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Intermolecular recognition revealed by the complex structure of human CLOCK-BMAL1 basic helix-loop-helix domains with E-box DNA.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Homo sapiens
molecule keywords Aryl hydrocarbon receptor nuclear translocator-like protein
total genus 22
structure length 60
sequence length 60
ec nomenclature
pdb deposition date 2012-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00010 HLH Helix-loop-helix DNA-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.280.10 Few Secondary Structures Irregular MYOD Basic-Helix-Loop-Helix Domain, subunit B Helix-loop-helix DNA-binding domain 4h10A00
1AN4A 2YPAA 4H10B 1NKPB 1UKLC 2QL2B 1MDYB 3U5VA 5I50A 4H10A 4ATHA 1A0AA 1NKPA 4F3LB 2YPBB 1R05A 2QL2A 1NLWB 1MDYA 2MH3A 3MUJA 1AM9A 4AYAA 4ATIA 2YPAB 4F3LA 2LFHA 2YPBA 1HLOA 4ATKA 5I4ZA 1AN2A 1NLWA 5EYOA
chains in the Genus database with same CATH superfamily
1AN4A 2YPAA 4H10B 1NKPB 1UKLC 2QL2B 1ZZAA 1MDYB 3U5VA 5I50A 4H10A 4ATHA 1A0AA 1NKPA 4F3LB 1K1FA 2YPBB 1R05A 2QL2A 1NLWB 1MDYA 2MH3A 3MUJA 1AM9A 4AYAA 4ATIA 2YPAB 4F3LA 2LFHA 2YPBA 1HLOA 4ATKA 5I4ZA 1AN2A 1NLWA 5EYOA
chains in the Genus database with same CATH topology
1AN4A 2YPAA 4H10B 1NKPB 1UKLC 2QL2B 1MDYB 3U5VA 5I50A 4H10A 4ATHA 1A0AA 1NKPA 4F3LB 2YPBB 1R05A 2QL2A 1NLWB 1MDYA 2MH3A 3MUJA 1AM9A 4AYAA 4ATIA 2YPAB 4F3LA 2LFHA 2YPBA 1HLOA 4ATKA 5I4ZA 1AN2A 1NLWA 5EYOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AN4 A;  2YPA A;  4H10 B;  1NKP B;  1UKL C;  2QL2 B;  1MDY B;  3U5V A;  5I50 A;  4H10 A;  4ATH A;  1A0A A;  1NKP A;  4F3L B;  2YPB B;  1R05 A;  2QL2 A;  1NLW B;  1MDY A;  2MH3 A;  3MUJ A;  1AM9 A;  4AYA A;  4ATI A;  2YPA B;  4F3L A;  2LFH A;  2YPB A;  1HLO A;  4ATK A;  5I4Z A;  1AN2 A;  1NLW A;  5EYO A; 
#chains in the Genus database with same CATH topology
 1AN4 A;  2YPA A;  4H10 B;  1NKP B;  1UKL C;  2QL2 B;  1ZZA A;  1MDY B;  3U5V A;  5I50 A;  4H10 A;  4ATH A;  1A0A A;  1NKP A;  4F3L B;  1K1F A;  2YPB B;  1R05 A;  2QL2 A;  1NLW B;  1MDY A;  2MH3 A;  3MUJ A;  1AM9 A;  4AYA A;  4ATI A;  2YPA B;  4F3L A;  2LFH A;  2YPB A;  1HLO A;  4ATK A;  5I4Z A;  1AN2 A;  1NLW A;  5EYO A; 
#chains in the Genus database with same CATH homology
 1AN4 A;  2YPA A;  4H10 B;  1NKP B;  1UKL C;  2QL2 B;  1MDY B;  3U5V A;  5I50 A;  4H10 A;  4ATH A;  1A0A A;  1NKP A;  4F3L B;  2YPB B;  1R05 A;  2QL2 A;  1NLW B;  1MDY A;  2MH3 A;  3MUJ A;  1AM9 A;  4AYA A;  4ATI A;  2YPA B;  4F3L A;  2LFH A;  2YPB A;  1HLO A;  4ATK A;  5I4Z A;  1AN2 A;  1NLW A;  5EYO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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