1NPSA

Crystal structure of n-terminal domain of protein s
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
88
structure length
88
Chain Sequence
ANITVFYNEDFQGKQVDLPPGNYTRAQLAALGIENNTISSVKVPPGVKAILYQNDGFAGDQIEVVANAEELGPLNNNVSSIRVISVPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-8)TIV3 (34-37)TIV1 (8-11)TVIII1 (68-71)S4 (40-42)EMPTYS3 (21-23)AH1 (25-31)TII2 (54-57)TII1 (44-47)S7 (80-85)S6 (58-64)3H1 (72-74)S5 (47-54)TII3 (74-77)S2 (12-18)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Myxococcus xanthus
publication title The domains of protein S from Myxococcus xanthus: structure, stability and interactions.
pubmed doi rcsb
molecule keywords DEVELOPMENT-SPECIFIC PROTEIN S
total genus 20
structure length 88
sequence length 88
ec nomenclature
pdb deposition date 1999-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1npsA00
1ZWOA 1ZIQA 1PRRA 1ZIRA 1PRSA 1A45A 1M8UA 3HZBA 1H4AX 1ZWMA 2B1OA 2BV2A 3CW3A 4PSPA 4PSRA 3SO1A 1HDFA 2KFBA 1HA4A 1OKIA 1ZIEA 3I9HA 3ENUA 1ZGTA 2M3UA 1A7HA 1GAMA 3QK3A 2K1WA 2M3CA 2NBRA 4GR7A 2K1XA 4NI3A 3ENTA 3SNYA 2M3TA 1BLBA 4W9AA 1HK0X 3SO0A 1NPSA 1BD7A 1E7NA 2JDGA 1YHPA 3LWKA 4W9BA 2DADA 2JDFA 1YTQA 2V2UA 4GCRA 3SNZA 1AG4A 1I5IA 2KP5A 1ELPA 4AKAA 4IAUA 2G98A 4JGFA 2A5MA 5HT8A 2BB2A 3IAJA 5HT9A 1GCSA 1AMMA 1DSLA 3HZ2A 4EL6A 1A5DA 4FD9A
chains in the Genus database with same CATH superfamily
1ZIQA 1GH5A 1A45A 1HA4A 1OKIA 3ENUA 1ZGTA 1A7HA 3QK3A 2K1WA 4GR7A 3ENTA 1BLBA 4W9AA 1G6EA 1AG4A 2KP5A 1ELPA 4AKAA 2A5MA 3UJZA 3IAJA 5HT9A 4FD9A 1ZWOA 1PRRA 1BHUA 1PRSA 1ZWMA 4PSRA 3SO1A 1HDFA 2KFBA 2M3UA 4NI3A 1E7NA 3LWKA 2DADA 1YTQA 2V2UA 3SNZA 4JGFA 1AMMA 1DSLA 1ZIRA 4PSPA 1H4AX 2BV2A 3CW3A 1ZIEA 3I9HA 3SNYA 1HK0X 1NPSA 1BD7A 4W9BA 1C01A 1I5IA 4IAUA 2G98A 2BB2A 3HZ2A 4EL6A 2JDFA 1A5DA 1WKTA 3SO0A 1M8UA 3HZBA 2B1OA 1F53A 1GAMA 2M3CA 2NBRA 2K1XA 2M3TA 2JDGA 1YHPA 4GCRA 5HT8A 1GCSA
chains in the Genus database with same CATH topology
1ZWOA 1ZIQA 1PRRA 1ZIRA 1PRSA 1A45A 1M8UA 3HZBA 1H4AX 1ZWMA 2B1OA 2BV2A 3CW3A 4PSPA 4PSRA 3SO1A 1HDFA 2KFBA 1HA4A 1OKIA 1ZIEA 3I9HA 3ENUA 1ZGTA 2M3UA 1A7HA 1GAMA 3QK3A 2K1WA 2M3CA 2NBRA 4GR7A 2K1XA 4NI3A 3ENTA 3SNYA 2M3TA 1BLBA 4W9AA 1HK0X 3SO0A 1NPSA 1BD7A 1E7NA 2JDGA 1YHPA 3LWKA 4W9BA 2DADA 2JDFA 1YTQA 2V2UA 4GCRA 3SNZA 1AG4A 1I5IA 2KP5A 1ELPA 4AKAA 4IAUA 2G98A 4JGFA 2A5MA 5HT8A 2BB2A 3IAJA 5HT9A 1GCSA 1AMMA 1DSLA 3HZ2A 4EL6A 1A5DA 4FD9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZWO A;  1ZIQ A;  1PRR A;  1ZIR A;  1PRS A;  1A45 A;  1M8U A;  3HZB A;  1H4A X;  1ZWM A;  2B1O A;  2BV2 A;  3CW3 A;  4PSP A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  1HA4 A;  1OKI A;  1ZIE A;  3I9H A;  3ENU A;  1ZGT A;  2M3U A;  1A7H A;  1GAM A;  3QK3 A;  2K1W A;  2M3C A;  2NBR A;  4GR7 A;  2K1X A;  4NI3 A;  3ENT A;  3SNY A;  2M3T A;  1BLB A;  4W9A A;  1HK0 X;  3SO0 A;  1NPS A;  1BD7 A;  1E7N A;  2JDG A;  1YHP A;  3LWK A;  4W9B A;  2DAD A;  2JDF A;  1YTQ A;  2V2U A;  4GCR A;  3SNZ A;  1AG4 A;  1I5I A;  2KP5 A;  1ELP A;  4AKA A;  4IAU A;  2G98 A;  4JGF A;  2A5M A;  5HT8 A;  2BB2 A;  3IAJ A;  5HT9 A;  1GCS A;  1AMM A;  1DSL A;  3HZ2 A;  4EL6 A;  1A5D A;  4FD9 A; 
#chains in the Genus database with same CATH topology
 1ZIQ A;  1GH5 A;  1A45 A;  1HA4 A;  1OKI A;  3ENU A;  1ZGT A;  1A7H A;  3QK3 A;  2K1W A;  4GR7 A;  3ENT A;  1BLB A;  4W9A A;  1G6E A;  1AG4 A;  2KP5 A;  1ELP A;  4AKA A;  2A5M A;  3UJZ A;  3IAJ A;  5HT9 A;  4FD9 A;  1ZWO A;  1PRR A;  1BHU A;  1PRS A;  1ZWM A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  2M3U A;  4NI3 A;  1E7N A;  3LWK A;  2DAD A;  1YTQ A;  2V2U A;  3SNZ A;  4JGF A;  1AMM A;  1DSL A;  1ZIR A;  4PSP A;  1H4A X;  2BV2 A;  3CW3 A;  1ZIE A;  3I9H A;  3SNY A;  1HK0 X;  1NPS A;  1BD7 A;  4W9B A;  1C01 A;  1I5I A;  4IAU A;  2G98 A;  2BB2 A;  3HZ2 A;  4EL6 A;  2JDF A;  1A5D A;  1WKT A;  3SO0 A;  1M8U A;  3HZB A;  2B1O A;  1F53 A;  1GAM A;  2M3C A;  2NBR A;  2K1X A;  2M3T A;  2JDG A;  1YHP A;  4GCR A;  5HT8 A;  1GCS A; 
#chains in the Genus database with same CATH homology
 1ZWO A;  1ZIQ A;  1PRR A;  1ZIR A;  1PRS A;  1A45 A;  1M8U A;  3HZB A;  1H4A X;  1ZWM A;  2B1O A;  2BV2 A;  3CW3 A;  4PSP A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  1HA4 A;  1OKI A;  1ZIE A;  3I9H A;  3ENU A;  1ZGT A;  2M3U A;  1A7H A;  1GAM A;  3QK3 A;  2K1W A;  2M3C A;  2NBR A;  4GR7 A;  2K1X A;  4NI3 A;  3ENT A;  3SNY A;  2M3T A;  1BLB A;  4W9A A;  1HK0 X;  3SO0 A;  1NPS A;  1BD7 A;  1E7N A;  2JDG A;  1YHP A;  3LWK A;  4W9B A;  2DAD A;  2JDF A;  1YTQ A;  2V2U A;  4GCR A;  3SNZ A;  1AG4 A;  1I5I A;  2KP5 A;  1ELP A;  4AKA A;  4IAU A;  2G98 A;  4JGF A;  2A5M A;  5HT8 A;  2BB2 A;  3IAJ A;  5HT9 A;  1GCS A;  1AMM A;  1DSL A;  3HZ2 A;  4EL6 A;  1A5D A;  4FD9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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