1NR9 | Genus

Total Genus 51

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	221
structure length	211
Chain Sequence	HMYQHHNWQGALLDYPVSKVVCVGSNYAPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRVLG

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure of Escherichia coli Putative Isomerase EC1262 (APC5008) rcsb
molecule keywords	Protein YCGM
molecule tags	Structural genomics, unknown function
source organism	Escherichia coli
total genus	51
structure length	211
sequence length	221
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2003-01-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	1nr9A00

3V77A 5D2IA 2Q1CX 4PFZA 2Q19X 4QKUA 3RR6A 1QCNA 4DBFA 1NKQA 4MAQA 3S52A 3R6OA 1SV6A 2EB6A 5D2FA 3BQBA 1SAWA 1QCOA 2Q1DX 1I7OA 4DBHA 5D2HA 1WZOA 1NR9A 1QQJA 3LZKA 2EB4A 5D2KA 2DFUA 1HYOA 2EB5A 3QDFA 2HZYA 2Q18X 2WQTA 5D2JA 2Q1AX 1GTTA 5D2GA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3V77 A;  5D2I A;  2Q1C X;  4PFZ A;  2Q19 X;  4QKU A;  3RR6 A;  1QCN A;  4DBF A;  1NKQ A;  4MAQ A;  3S52 A;  3R6O A;  1SV6 A;  2EB6 A;  5D2F A;  3BQB A;  1SAW A;  1QCO A;  2Q1D X;  1I7O A;  4DBH A;  5D2H A;  1WZO A;  1NR9 A;  1QQJ A;  3LZK A;  2EB4 A;  5D2K A;  2DFU A;  1HYO A;  2EB5 A;  3QDF A;  2HZY A;  2Q18 X;  2WQT A;  5D2J A;  2Q1A X;  1GTT A;  5D2G A; 
#chains in the Genus database with same CATH topology
 3V77 A;  5D2I A;  2Q1C X;  4PFZ A;  2Q19 X;  4QKU A;  3RR6 A;  1QCN A;  4DBF A;  1NKQ A;  4MAQ A;  3S52 A;  3R6O A;  1SV6 A;  2EB6 A;  5D2F A;  3BQB A;  1SAW A;  1QCO A;  2Q1D X;  1I7O A;  4DBH A;  5D2H A;  1WZO A;  1NR9 A;  1QQJ A;  3LZK A;  2EB4 A;  5D2K A;  2DFU A;  1HYO A;  2EB5 A;  3QDF A;  2HZY A;  2Q18 X;  2WQT A;  5D2J A;  2Q1A X;  1GTT A;  5D2G A; 
#chains in the Genus database with same CATH homology
 3V77 A;  5D2I A;  2Q1C X;  4PFZ A;  2Q19 X;  4QKU A;  3RR6 A;  1QCN A;  4DBF A;  1NKQ A;  4MAQ A;  3S52 A;  3R6O A;  1SV6 A;  2EB6 A;  5D2F A;  3BQB A;  1SAW A;  1QCO A;  2Q1D X;  1I7O A;  4DBH A;  5D2H A;  1WZO A;  1NR9 A;  1QQJ A;  3LZK A;  2EB4 A;  5D2K A;  2DFU A;  1HYO A;  2EB5 A;  3QDF A;  2HZY A;  2Q18 X;  2WQT A;  5D2J A;  2Q1A X;  1GTT A;  5D2G A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NR9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations