1OKHA

Viscotoxin a3 from viscum album l.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
pubmed doi rcsb
molecule keywords VISCOTOXIN A3
molecule tags Toxin
total genus 12
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1okhA00
4FC1A 1JXXA 2EYBA 2FD7A 3SZSA 1YV8A 1CCMA 2FD9A 1CCNA 1JMNA 1EJGA 1BHPA 3NIRA 2EYCA 1CXRA 1CBNA 1AB1A 2EYAA 1YVAA 2V9BA 1NBLA 1WUWA 1CRNA 1JMPA 1JXWA 1JXTA 1ED0A 1JXYA 1JXUA 2PLHA 3C8PA 3UE7B 2EYDA 1OKHA 3U7TA 1CNRA 1ORLA
chains in the Genus database with same CATH superfamily
1IJGA 1JXXA 4FC1A 2EYBA 2FD7A 3SZSA 1YV8A 1CCMA 2FD9A 1CCNA 1JMNA 1FOUA 1EJGA 1BHPA 3NIRA 2EYCA 1CXRA 1AB1A 1CBNA 1YVAA 2EYAA 2V9BA 1NBLA 1WUWA 1CRNA 1JMPA 1JNBA 1JXWA 1JXTA 1ED0A 1JXYA 1JXUA 2PLHA 3C8PA 3UE7B 1H5WA 2EYDA 1OKHA 3U7TA 1CNRA 1ORLA
chains in the Genus database with same CATH topology
4FC1A 1JXXA 2EYBA 2FD7A 3SZSA 1YV8A 1CCMA 2FD9A 1CCNA 1JMNA 1EJGA 1BHPA 3NIRA 2EYCA 1CXRA 1CBNA 1AB1A 2EYAA 1YVAA 2V9BA 1NBLA 1WUWA 1CRNA 1JMPA 1JXWA 1JXTA 1ED0A 1JXYA 1JXUA 2PLHA 3C8PA 3UE7B 2EYDA 1OKHA 3U7TA 1CNRA 1ORLA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4FC1 A;  1JXX A;  2EYB A;  2FD7 A;  3SZS A;  1YV8 A;  1CCM A;  2FD9 A;  1CCN A;  1JMN A;  1EJG A;  1BHP A;  3NIR A;  2EYC A;  1CXR A;  1CBN A;  1AB1 A;  2EYA A;  1YVA A;  2V9B A;  1NBL A;  1WUW A;  1CRN A;  1JMP A;  1JXW A;  1JXT A;  1ED0 A;  1JXY A;  1JXU A;  2PLH A;  3C8P A;  3UE7 B;  2EYD A;  1OKH A;  3U7T A;  1CNR A;  1ORL A; 
#chains in the Genus database with same CATH topology
 1IJG A;  1JXX A;  4FC1 A;  2EYB A;  2FD7 A;  3SZS A;  1YV8 A;  1CCM A;  2FD9 A;  1CCN A;  1JMN A;  1FOU A;  1EJG A;  1BHP A;  3NIR A;  2EYC A;  1CXR A;  1AB1 A;  1CBN A;  1YVA A;  2EYA A;  2V9B A;  1NBL A;  1WUW A;  1CRN A;  1JMP A;  1JNB A;  1JXW A;  1JXT A;  1ED0 A;  1JXY A;  1JXU A;  2PLH A;  3C8P A;  3UE7 B;  1H5W A;  2EYD A;  1OKH A;  3U7T A;  1CNR A;  1ORL A; 
#chains in the Genus database with same CATH homology
 4FC1 A;  1JXX A;  2EYB A;  2FD7 A;  3SZS A;  1YV8 A;  1CCM A;  2FD9 A;  1CCN A;  1JMN A;  1EJG A;  1BHP A;  3NIR A;  2EYC A;  1CXR A;  1CBN A;  1AB1 A;  2EYA A;  1YVA A;  2V9B A;  1NBL A;  1WUW A;  1CRN A;  1JMP A;  1JXW A;  1JXT A;  1ED0 A;  1JXY A;  1JXU A;  2PLH A;  3C8P A;  3UE7 B;  2EYD A;  1OKH A;  3U7T A;  1CNR A;  1ORL A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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