1OKHA

Viscotoxin a3 from viscum album l.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
pubmed doi rcsb
molecule keywords VISCOTOXIN A3
molecule tags Toxin
total genus 12
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1okhA00
1JXXA 2EYBA 3UE7B 2EYAA 1NBLA 1ORLA 1WUWA 1EJGA 1AB1A 1JXWA 4FC1A 1JMNA 2FD7A 1JXTA 1JXYA 1ED0A 1JMPA 1CBNA 1YV8A 2PLHA 1OKHA 2V9BA 1YVAA 1CXRA 1CRNA 1CCNA 3NIRA 3U7TA 1JXUA 1CCMA 2EYCA 2EYDA 1BHPA 1CNRA 3C8PA 3SZSA 2FD9A
chains in the Genus database with same CATH superfamily
1JXXA 2EYBA 3UE7B 2EYAA 1NBLA 1ORLA 1FOUA 1WUWA 1EJGA 1AB1A 1JXWA 4FC1A 1JMNA 2FD7A 1JXTA 1JXYA 1ED0A 1JMPA 1JNBA 1CBNA 1H5WA 1YV8A 2PLHA 1OKHA 2V9BA 1YVAA 1CXRA 1CRNA 1CCNA 3NIRA 3U7TA 1IJGA 1JXUA 1CCMA 2EYCA 2EYDA 1BHPA 1CNRA 3C8PA 3SZSA 2FD9A
chains in the Genus database with same CATH topology
1JXXA 2EYBA 3UE7B 2EYAA 1NBLA 1ORLA 1WUWA 1EJGA 1AB1A 1JXWA 4FC1A 1JMNA 2FD7A 1JXTA 1JXYA 1ED0A 1JMPA 1CBNA 1YV8A 2PLHA 1OKHA 2V9BA 1YVAA 1CXRA 1CRNA 1CCNA 3NIRA 3U7TA 1JXUA 1CCMA 2EYCA 2EYDA 1BHPA 1CNRA 3C8PA 3SZSA 2FD9A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1JXX A;  2EYB A;  3UE7 B;  2EYA A;  1NBL A;  1ORL A;  1WUW A;  1EJG A;  1AB1 A;  1JXW A;  4FC1 A;  1JMN A;  2FD7 A;  1JXT A;  1JXY A;  1ED0 A;  1JMP A;  1CBN A;  1YV8 A;  2PLH A;  1OKH A;  2V9B A;  1YVA A;  1CXR A;  1CRN A;  1CCN A;  3NIR A;  3U7T A;  1JXU A;  1CCM A;  2EYC A;  2EYD A;  1BHP A;  1CNR A;  3C8P A;  3SZS A;  2FD9 A; 
#chains in the Genus database with same CATH topology
 1JXX A;  2EYB A;  3UE7 B;  2EYA A;  1NBL A;  1ORL A;  1FOU A;  1WUW A;  1EJG A;  1AB1 A;  1JXW A;  4FC1 A;  1JMN A;  2FD7 A;  1JXT A;  1JXY A;  1ED0 A;  1JMP A;  1JNB A;  1CBN A;  1H5W A;  1YV8 A;  2PLH A;  1OKH A;  2V9B A;  1YVA A;  1CXR A;  1CRN A;  1CCN A;  3NIR A;  3U7T A;  1IJG A;  1JXU A;  1CCM A;  2EYC A;  2EYD A;  1BHP A;  1CNR A;  3C8P A;  3SZS A;  2FD9 A; 
#chains in the Genus database with same CATH homology
 1JXX A;  2EYB A;  3UE7 B;  2EYA A;  1NBL A;  1ORL A;  1WUW A;  1EJG A;  1AB1 A;  1JXW A;  4FC1 A;  1JMN A;  2FD7 A;  1JXT A;  1JXY A;  1ED0 A;  1JMP A;  1CBN A;  1YV8 A;  2PLH A;  1OKH A;  2V9B A;  1YVA A;  1CXR A;  1CRN A;  1CCN A;  3NIR A;  3U7T A;  1JXU A;  1CCM A;  2EYC A;  2EYD A;  1BHP A;  1CNR A;  3C8P A;  3SZS A;  2FD9 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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