1OKHA

Viscotoxin a3 from viscum album l.
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
46
structure length
46
Chain Sequence
KSCCPNTTGRNIYNACRLTGAPRPTCAKLSGCKIISGSTCPSDYPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Structure of Viscotoxin A3: Disulfide Location from Weak Sad Data
pubmed doi rcsb
molecule keywords VISCOTOXIN A3
molecule tags Toxin
total genus 12
structure length 46
sequence length 46
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1okhA00
1YV8A 2EYDA 1CRNA 4FC1A 1JXUA 1CXRA 2V9BA 3U7TA 1ORLA 1CBNA 3NIRA 1YVAA 1BHPA 2FD7A 2PLHA 1WUWA 3SZSA 1NBLA 3C8PA 2EYAA 1JMNA 1JXXA 1OKHA 2FD9A 2EYBA 1CCNA 1JXTA 2EYCA 3UE7B 1JXYA 1CNRA 1AB1A 1CCMA 1ED0A 1JMPA 1EJGA 1JXWA
chains in the Genus database with same CATH superfamily
1YV8A 2EYDA 1CRNA 4FC1A 1JXUA 1CXRA 2V9BA 3U7TA 1ORLA 1CBNA 3NIRA 1YVAA 1BHPA 2FD7A 2PLHA 1WUWA 3SZSA 1NBLA 1JNBA 3C8PA 2EYAA 1JMNA 1JXXA 1OKHA 2FD9A 2EYBA 1IJGA 1CCNA 1JXTA 2EYCA 3UE7B 1JXYA 1FOUA 1H5WA 1CNRA 1AB1A 1CCMA 1ED0A 1JMPA 1EJGA 1JXWA
chains in the Genus database with same CATH topology
1YV8A 2EYDA 1CRNA 4FC1A 1JXUA 1CXRA 2V9BA 3U7TA 1ORLA 1CBNA 3NIRA 1YVAA 1BHPA 2FD7A 2PLHA 1WUWA 3SZSA 1NBLA 3C8PA 2EYAA 1JMNA 1JXXA 1OKHA 2FD9A 2EYBA 1CCNA 1JXTA 2EYCA 3UE7B 1JXYA 1CNRA 1AB1A 1CCMA 1ED0A 1JMPA 1EJGA 1JXWA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1YV8 A;  2EYD A;  1CRN A;  4FC1 A;  1JXU A;  1CXR A;  2V9B A;  3U7T A;  1ORL A;  1CBN A;  3NIR A;  1YVA A;  1BHP A;  2FD7 A;  2PLH A;  1WUW A;  3SZS A;  1NBL A;  3C8P A;  2EYA A;  1JMN A;  1JXX A;  1OKH A;  2FD9 A;  2EYB A;  1CCN A;  1JXT A;  2EYC A;  3UE7 B;  1JXY A;  1CNR A;  1AB1 A;  1CCM A;  1ED0 A;  1JMP A;  1EJG A;  1JXW A; 
#chains in the Genus database with same CATH topology
 1YV8 A;  2EYD A;  1CRN A;  4FC1 A;  1JXU A;  1CXR A;  2V9B A;  3U7T A;  1ORL A;  1CBN A;  3NIR A;  1YVA A;  1BHP A;  2FD7 A;  2PLH A;  1WUW A;  3SZS A;  1NBL A;  1JNB A;  3C8P A;  2EYA A;  1JMN A;  1JXX A;  1OKH A;  2FD9 A;  2EYB A;  1IJG A;  1CCN A;  1JXT A;  2EYC A;  3UE7 B;  1JXY A;  1FOU A;  1H5W A;  1CNR A;  1AB1 A;  1CCM A;  1ED0 A;  1JMP A;  1EJG A;  1JXW A; 
#chains in the Genus database with same CATH homology
 1YV8 A;  2EYD A;  1CRN A;  4FC1 A;  1JXU A;  1CXR A;  2V9B A;  3U7T A;  1ORL A;  1CBN A;  3NIR A;  1YVA A;  1BHP A;  2FD7 A;  2PLH A;  1WUW A;  3SZS A;  1NBL A;  3C8P A;  2EYA A;  1JMN A;  1JXX A;  1OKH A;  2FD9 A;  2EYB A;  1CCN A;  1JXT A;  2EYC A;  3UE7 B;  1JXY A;  1CNR A;  1AB1 A;  1CCM A;  1ED0 A;  1JMP A;  1EJG A;  1JXW A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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