1OKI | Genus

Total Genus 41

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	41
sequence length	183
structure length	182
Chain Sequence	PPGNYRLVVFELENFQGRRAEFSGESNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQW

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Eye lens protein
source organism	Homo sapiens
publication title	Crystal Structure of Truncated Human Beta-B1-Crystallin pubmed doi rcsb
molecule keywords	BETA CRYSTALLIN B1
total genus	41
structure length	182
sequence length	183
chains with identical sequence	B
ec nomenclature
pdb deposition date	2003-07-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00030	Crystall	Beta/Gamma crystallin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Crystallins	1okiA01
2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Crystallins	1okiA02

4GR7A 1I5IA 1BLBA 1PRSA 1YTQA 3ENTA 1A45A 4PSRA 1A7HA 4GCRA 3I9HA 3SO1A 4AKAA 2BV2A 2G98A 1HK0X 2V2UA 1AG4A 2JDGA 3SNYA 3SNZA 1M8UA 2NBRA 1E7NA 1HA4A 4NI3A 2M3CA 1HDFA 1GAMA 1ZIEA 4JGFA 4W9BA 2BB2A 4EL6A 5HT9A 1ZIRA 2M3UA 2JDFA 3ENUA 3LWKA 4W9AA 3HZ2A 3QK3A 3HZBA 4IAUA 3IAJA 2DADA 1ELPA 3CW3A 5HT8A 1BD7A 1NPSA 3SO0A 1A5DA 1DSLA 1OKIA 1ZWOA 2KP5A 1AMMA 1ZGTA 1ZIQA 2A5MA 1GCSA 2B1OA 2K1WA 2KFBA 2M3TA 4FD9A 1ZWMA 1PRRA 1H4AX 2K1XA 1YHPA 4PSPA
chains in the Genus database with same CATH superfamily

1PRSA 1YTQA 3ENTA 4PSRA 3I9HA 2G98A 1HK0X 3SNYA 3SNZA 1E7NA 1ZIRA 3HZ2A 3HZBA 4IAUA 1A5DA 2M3UA 1ZWOA 2KP5A 1AMMA 4FD9A 2K1WA 1GCSA 1YHPA 2K1XA 1WKTA 4GCRA 3SO1A 2BV2A 1M8UA 4NI3A 4JGFA 1HDFA 4W9BA 4EL6A 3IAJA 3CW3A 1C01A 1OKIA 1BHUA 2B1OA 1ZWMA 1PRRA 3UJZA 4PSPA 1F53A 1A45A 1A7HA 2V2UA 2JDGA 1HA4A 2JDFA 3ENUA 3LWKA 1ELPA 1ZGTA 1ZIQA 2M3TA 2KFBA 1H4AX 2NBRA 4GR7A 1G6EA 1I5IA 1GH5A 1BLBA 1AG4A 2M3CA 5HT9A 1GAMA 1ZIEA 2BB2A 4W9AA 3QK3A 2DADA 5HT8A 1BD7A 1NPSA 3SO0A 1DSLA 2A5MA 4AKAA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4GR7 A;  1I5I A;  1BLB A;  1PRS A;  1YTQ A;  3ENT A;  1A45 A;  4PSR A;  1A7H A;  4GCR A;  3I9H A;  3SO1 A;  4AKA A;  2BV2 A;  2G98 A;  1HK0 X;  2V2U A;  1AG4 A;  2JDG A;  3SNY A;  3SNZ A;  1M8U A;  2NBR A;  1E7N A;  1HA4 A;  4NI3 A;  2M3C A;  1HDF A;  1GAM A;  1ZIE A;  4JGF A;  4W9B A;  2BB2 A;  4EL6 A;  5HT9 A;  1ZIR A;  2M3U A;  2JDF A;  3ENU A;  3LWK A;  4W9A A;  3HZ2 A;  3QK3 A;  3HZB A;  4IAU A;  3IAJ A;  2DAD A;  1ELP A;  3CW3 A;  5HT8 A;  1BD7 A;  1NPS A;  3SO0 A;  1A5D A;  1DSL A;  1OKI A;  1ZWO A;  2KP5 A;  1AMM A;  1ZGT A;  1ZIQ A;  2A5M A;  1GCS A;  2B1O A;  2K1W A;  2KFB A;  2M3T A;  4FD9 A;  1ZWM A;  1PRR A;  1H4A X;  2K1X A;  1YHP A;  4PSP A; 
#chains in the Genus database with same CATH topology
 1PRS A;  1YTQ A;  3ENT A;  4PSR A;  3I9H A;  2G98 A;  1HK0 X;  3SNY A;  3SNZ A;  1E7N A;  1ZIR A;  3HZ2 A;  3HZB A;  4IAU A;  1A5D A;  2M3U A;  1ZWO A;  2KP5 A;  1AMM A;  4FD9 A;  2K1W A;  1GCS A;  1YHP A;  2K1X A;  1WKT A;  4GCR A;  3SO1 A;  2BV2 A;  1M8U A;  4NI3 A;  4JGF A;  1HDF A;  4W9B A;  4EL6 A;  3IAJ A;  3CW3 A;  1C01 A;  1OKI A;  1BHU A;  2B1O A;  1ZWM A;  1PRR A;  3UJZ A;  4PSP A;  1F53 A;  1A45 A;  1A7H A;  2V2U A;  2JDG A;  1HA4 A;  2JDF A;  3ENU A;  3LWK A;  1ELP A;  1ZGT A;  1ZIQ A;  2M3T A;  2KFB A;  1H4A X;  2NBR A;  4GR7 A;  1G6E A;  1I5I A;  1GH5 A;  1BLB A;  1AG4 A;  2M3C A;  5HT9 A;  1GAM A;  1ZIE A;  2BB2 A;  4W9A A;  3QK3 A;  2DAD A;  5HT8 A;  1BD7 A;  1NPS A;  3SO0 A;  1DSL A;  2A5M A;  4AKA A; 
#chains in the Genus database with same CATH homology
 4GR7 A;  1I5I A;  1BLB A;  1PRS A;  1YTQ A;  3ENT A;  1A45 A;  4PSR A;  1A7H A;  4GCR A;  3I9H A;  3SO1 A;  4AKA A;  2BV2 A;  2G98 A;  1HK0 X;  2V2U A;  1AG4 A;  2JDG A;  3SNY A;  3SNZ A;  1M8U A;  2NBR A;  1E7N A;  1HA4 A;  4NI3 A;  2M3C A;  1HDF A;  1GAM A;  1ZIE A;  4JGF A;  4W9B A;  2BB2 A;  4EL6 A;  5HT9 A;  1ZIR A;  2M3U A;  2JDF A;  3ENU A;  3LWK A;  4W9A A;  3HZ2 A;  3QK3 A;  3HZB A;  4IAU A;  3IAJ A;  2DAD A;  1ELP A;  3CW3 A;  5HT8 A;  1BD7 A;  1NPS A;  3SO0 A;  1A5D A;  1DSL A;  1OKI A;  1ZWO A;  2KP5 A;  1AMM A;  1ZGT A;  1ZIQ A;  2A5M A;  1GCS A;  2B1O A;  2K1W A;  2KFB A;  2M3T A;  4FD9 A;  1ZWM A;  1PRR A;  1H4A X;  2K1X A;  1YHP A;  4PSP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1OKIA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations