1OUWA

Crystal structure of calystegia sepium agglutinin
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
150
structure length
148
Chain Sequence
VPMDTISGPWGNNGGNFWSFRPVNKINQIVISYGGGGNNPIALTFSSTKADGSKDTITVGGGGPDSITGTEMVNIGTDEYLTGISGTFGIYLDNNVLRSITFTTNLKAHGPYGQKVGTPFSSANVNEIVGFLGRSGYYVDAIGTYNRH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of the Calystegia sepium agglutinin reveals a novel quaternary arrangement of lectin subunits with a beta-prism fold
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords lectin
total genus 26
structure length 148
sequence length 150
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ouwA00
3LM1A 1WS5A 1XXRA 3LL0A 3LL1A 3VY6A 3AQGA 2JZ4A 2GUEA 5EXGA 3P8SA 5J4XA 2NUOA 5BN6E 4AK4A 1UGYA 2BMYA 1C3KA 1WS4C 2BMZA 4R6QA 1JACA 3O44A 3VZEA 4MQ0A 1VBOA 1UGYC 1UH1A 1TP8A 4AKBA 2HYQA 2NU5A 1UGXA 1UH0A 1ZGSA 5JM1A 1XEZA 3MIUA 2HYRA 1WS5C 3LL2A 1J4UA 4WOGA 1X1VA 3APAA 4PIKA 2GUXA 5J4TA 4AKCA 3LKYA 2BN0A 4DDNA 1C3NA 3MIVA 4AKDA 1C3MA 4R6NA 5J50A 2GUCA 3LLYA 1WS4A 1ZGRA 3R52A 1PXDA 4R6RA 1M26A 1KUJA 3LLZA 4PIUA 3VZFA 1UGWA 4PIFA 4R6PA 1VBPA 4GX7A 1TOQA 1J4SA 3WOBA 1XXQA 2GUDA 3VZGA 3WOCA 1OUWA 4PITA 5AV7A 1UGWC 2GTYA 5J51A 3MITA 3VY7A 1J4TA 3R50A 4R6OA 3R51A 1KU8A 1JOTA
chains in the Genus database with same CATH superfamily
3LM1A 1WS5A 1XXRA 3LL0A 3LL1A 3VY6A 3AQGA 2JZ4A 2GUEA 5EXGA 3P8SA 5J4XA 2NUOA 5BN6E 4AK4A 1UGYA 1VMOA 2BMYA 1C3KA 1WS4C 2BMZA 4R6QA 1JACA 4ARYA 3O44A 3VZEA 4MQ0A 1VBOA 1UGYC 1UH1A 1TP8A 1W99A 4W8JA 4AKBA 2HYQA 2NU5A 1UGXA 1UH0A 1ZGSA 5JM1A 1XEZA 3MIUA 2HYRA 4QX1A 1WS5C 3LL2A 1CIYA 1J4UA 4WOGA 1X1VA 3APAA 4PIKA 2GUXA 5J4TA 2C9KA 4AKCA 3LKYA 2BN0A 4QX2A 4DDNA 1C3NA 3MIVA 3EB7A 4AKDA 4ARXA 1C3MA 4R6NA 5J50A 2GUCA 1I5PA 3LLYA 1DLCA 3TOWA 1WS4A 1ZGRA 3R52A 1PXDA 4R6RA 1M26A 1KUJA 3LLZA 4PIUA 3VZFA 4D8MA 1UGWA 4PIFA 4R6PA 1VBPA 4GX7A 2QP2A 4MOAA 1TOQA 1J4SA 3WOBA 1XXQA 2GUDA 3VZGA 3WOCA 1OUWA 4PITA 5AV7A 4QX3A 1UGWC 1JI6A 2GTYA 5J51A 3MITA 1J4TA 3R50A 4R6OA 3VY7A 3R51A 1KU8A 1JOTA 4QX0A
chains in the Genus database with same CATH topology
3LM1A 1WS5A 1XXRA 3LL0A 3LL1A 3VY6A 3AQGA 2JZ4A 2GUEA 5EXGA 3P8SA 5J4XA 2NUOA 5BN6E 4AK4A 1UGYA 2BMYA 1C3KA 1WS4C 2BMZA 4R6QA 1JACA 3O44A 3VZEA 4MQ0A 1VBOA 1UGYC 1UH1A 1TP8A 4AKBA 2HYQA 2NU5A 1UGXA 1UH0A 1ZGSA 5JM1A 1XEZA 3MIUA 2HYRA 1WS5C 3LL2A 1J4UA 4WOGA 1X1VA 3APAA 4PIKA 2GUXA 5J4TA 4AKCA 3LKYA 2BN0A 4DDNA 1C3NA 3MIVA 4AKDA 1C3MA 4R6NA 5J50A 2GUCA 3LLYA 1WS4A 1ZGRA 3R52A 1PXDA 4R6RA 1M26A 1KUJA 3LLZA 4PIUA 3VZFA 1UGWA 4PIFA 4R6PA 1VBPA 4GX7A 1TOQA 1J4SA 3WOBA 1XXQA 2GUDA 3VZGA 3WOCA 1OUWA 4PITA 5AV7A 1UGWC 2GTYA 5J51A 3MITA 3VY7A 1J4TA 3R50A 4R6OA 3R51A 1KU8A 1JOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LM1 A;  1WS5 A;  1XXR A;  3LL0 A;  3LL1 A;  3VY6 A;  3AQG A;  2JZ4 A;  2GUE A;  5EXG A;  3P8S A;  5J4X A;  2NUO A;  5BN6 E;  4AK4 A;  1UGY A;  2BMY A;  1C3K A;  1WS4 C;  2BMZ A;  4R6Q A;  1JAC A;  3O44 A;  3VZE A;  4MQ0 A;  1VBO A;  1UGY C;  1UH1 A;  1TP8 A;  4AKB A;  2HYQ A;  2NU5 A;  1UGX A;  1UH0 A;  1ZGS A;  5JM1 A;  1XEZ A;  3MIU A;  2HYR A;  1WS5 C;  3LL2 A;  1J4U A;  4WOG A;  1X1V A;  3APA A;  4PIK A;  2GUX A;  5J4T A;  4AKC A;  3LKY A;  2BN0 A;  4DDN A;  1C3N A;  3MIV A;  4AKD A;  1C3M A;  4R6N A;  5J50 A;  2GUC A;  3LLY A;  1WS4 A;  1ZGR A;  3R52 A;  1PXD A;  4R6R A;  1M26 A;  1KUJ A;  3LLZ A;  4PIU A;  3VZF A;  1UGW A;  4PIF A;  4R6P A;  1VBP A;  4GX7 A;  1TOQ A;  1J4S A;  3WOB A;  1XXQ A;  2GUD A;  3VZG A;  3WOC A;  1OUW A;  4PIT A;  5AV7 A;  1UGW C;  2GTY A;  5J51 A;  3MIT A;  3VY7 A;  1J4T A;  3R50 A;  4R6O A;  3R51 A;  1KU8 A;  1JOT A; 
#chains in the Genus database with same CATH topology
 3LM1 A;  1WS5 A;  1XXR A;  3LL0 A;  3LL1 A;  3VY6 A;  3AQG A;  2JZ4 A;  2GUE A;  5EXG A;  3P8S A;  5J4X A;  2NUO A;  5BN6 E;  4AK4 A;  1UGY A;  1VMO A;  2BMY A;  1C3K A;  1WS4 C;  2BMZ A;  4R6Q A;  1JAC A;  4ARY A;  3O44 A;  3VZE A;  4MQ0 A;  1VBO A;  1UGY C;  1UH1 A;  1TP8 A;  1W99 A;  4W8J A;  4AKB A;  2HYQ A;  2NU5 A;  1UGX A;  1UH0 A;  1ZGS A;  5JM1 A;  1XEZ A;  3MIU A;  2HYR A;  4QX1 A;  1WS5 C;  3LL2 A;  1CIY A;  1J4U A;  4WOG A;  1X1V A;  3APA A;  4PIK A;  2GUX A;  5J4T A;  2C9K A;  4AKC A;  3LKY A;  2BN0 A;  4QX2 A;  4DDN A;  1C3N A;  3MIV A;  3EB7 A;  4AKD A;  4ARX A;  1C3M A;  4R6N A;  5J50 A;  2GUC A;  1I5P A;  3LLY A;  1DLC A;  3TOW A;  1WS4 A;  1ZGR A;  3R52 A;  1PXD A;  4R6R A;  1M26 A;  1KUJ A;  3LLZ A;  4PIU A;  3VZF A;  4D8M A;  1UGW A;  4PIF A;  4R6P A;  1VBP A;  4GX7 A;  2QP2 A;  4MOA A;  1TOQ A;  1J4S A;  3WOB A;  1XXQ A;  2GUD A;  3VZG A;  3WOC A;  1OUW A;  4PIT A;  5AV7 A;  4QX3 A;  1UGW C;  1JI6 A;  2GTY A;  5J51 A;  3MIT A;  1J4T A;  3R50 A;  4R6O A;  3VY7 A;  3R51 A;  1KU8 A;  1JOT A;  4QX0 A; 
#chains in the Genus database with same CATH homology
 3LM1 A;  1WS5 A;  1XXR A;  3LL0 A;  3LL1 A;  3VY6 A;  3AQG A;  2JZ4 A;  2GUE A;  5EXG A;  3P8S A;  5J4X A;  2NUO A;  5BN6 E;  4AK4 A;  1UGY A;  2BMY A;  1C3K A;  1WS4 C;  2BMZ A;  4R6Q A;  1JAC A;  3O44 A;  3VZE A;  4MQ0 A;  1VBO A;  1UGY C;  1UH1 A;  1TP8 A;  4AKB A;  2HYQ A;  2NU5 A;  1UGX A;  1UH0 A;  1ZGS A;  5JM1 A;  1XEZ A;  3MIU A;  2HYR A;  1WS5 C;  3LL2 A;  1J4U A;  4WOG A;  1X1V A;  3APA A;  4PIK A;  2GUX A;  5J4T A;  4AKC A;  3LKY A;  2BN0 A;  4DDN A;  1C3N A;  3MIV A;  4AKD A;  1C3M A;  4R6N A;  5J50 A;  2GUC A;  3LLY A;  1WS4 A;  1ZGR A;  3R52 A;  1PXD A;  4R6R A;  1M26 A;  1KUJ A;  3LLZ A;  4PIU A;  3VZF A;  1UGW A;  4PIF A;  4R6P A;  1VBP A;  4GX7 A;  1TOQ A;  1J4S A;  3WOB A;  1XXQ A;  2GUD A;  3VZG A;  3WOC A;  1OUW A;  4PIT A;  5AV7 A;  1UGW C;  2GTY A;  5J51 A;  3MIT A;  3VY7 A;  1J4T A;  3R50 A;  4R6O A;  3R51 A;  1KU8 A;  1JOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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