1PXDA

Crystal structure of the complex of jacalin with meso-tetrasulphonatophenylporphyrin.
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)S11 (124-132)EMPTYTIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)TVIa1 (59-62)TIV3 (60-63)S8 (92-97)TIV5 (88-91)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV6 (120-123)S10 (112-120)S4 (37-40)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Porphyrin binding to jacalin is facilitated by the inherent plasticity of the carbohydrate-binding site: novel mode of lectin-ligand interaction.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 28
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2003-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1pxdA00
1C3NA 3LKYA 1J4TA 2BN0A 1VBOA 3VZEA 3MIVA 1UH1A 1TP8A 1UGXA 2HYQA 4AKDA 4PIKA 3APAA 1JACA 3AQGA 1M26A 3R50A 3VZGA 3LL2A 4AKBA 4R6NA 2BMYA 5J51A 1OUWA 1KUJA 1WS5A 4PITA 2GTYA 2GUCA 2GUEA 1WS4A 3R51A 1KU8A 5EXGA 4R6QA 4PIFA 3LLYA 3R52A 1WS4C 1UGWA 1XXQA 4AKCA 1UGWC 1XXRA 4R6PA 4PIUA 1X1VA 1XEZA 5JM1A 3LM1A 2NU5A 2JZ4A 3MITA 1C3KA 4MQ0A 3WOCA 1ZGSA 5AV7A 1WS5C 3VY6A 4WOGA 5J4XA 2GUDA 3VY7A 4R6OA 4AK4A 3LL0A 4R6RA 1UGYA 1VBPA 3LL1A 1C3MA 3WOBA 1J4SA 1UGYC 5J50A 3P8SA 3MIUA 2HYRA 1UH0A 2NUOA 1ZGRA 1J4UA 4GX7A 1JOTA 3O44A 4DDNA 2GUXA 3LLZA 5BN6E 3VZFA 5J4TA 2BMZA 1TOQA 1PXDA
chains in the Genus database with same CATH superfamily
1C3NA 3LKYA 1J4TA 2BN0A 1VBOA 3VZEA 4MOAA 3MIVA 1UH1A 1TP8A 1UGXA 1I5PA 4QX1A 2HYQA 4AKDA 4PIKA 2C9KA 3APAA 1JACA 3AQGA 1JI6A 1M26A 3R50A 3EB7A 3VZGA 3LL2A 4AKBA 4R6NA 3TOWA 2BMYA 5J51A 1OUWA 1KUJA 1WS5A 4PITA 2GTYA 2GUCA 2GUEA 1W99A 1WS4A 3R51A 1KU8A 5EXGA 4R6QA 4PIFA 3LLYA 3R52A 1WS4C 1UGWA 1XXQA 4AKCA 1UGWC 1XXRA 4R6PA 4PIUA 1X1VA 1XEZA 5JM1A 3LM1A 2NU5A 2JZ4A 4D8MA 3MITA 4W8JA 1C3KA 4MQ0A 3WOCA 2QP2A 1ZGSA 4ARYA 5AV7A 1CIYA 1WS5C 3VY6A 4WOGA 4QX3A 2GUDA 5J4XA 3VY7A 4R6OA 4AK4A 3LL0A 4R6RA 1UGYA 1VBPA 3LL1A 1C3MA 3WOBA 1J4SA 1UGYC 5J50A 4QX0A 3P8SA 3MIUA 2HYRA 1UH0A 2NUOA 4QX2A 1ZGRA 1J4UA 1VMOA 4GX7A 1DLCA 1JOTA 3O44A 4DDNA 4ARXA 2GUXA 3LLZA 5BN6E 3VZFA 5J4TA 2BMZA 1TOQA 1PXDA
chains in the Genus database with same CATH topology
1C3NA 3LKYA 1J4TA 2BN0A 1VBOA 3VZEA 3MIVA 1UH1A 1TP8A 1UGXA 2HYQA 4AKDA 4PIKA 3APAA 1JACA 3AQGA 1M26A 3R50A 3VZGA 3LL2A 4AKBA 4R6NA 2BMYA 5J51A 1OUWA 1KUJA 1WS5A 4PITA 2GTYA 2GUCA 2GUEA 1WS4A 3R51A 1KU8A 5EXGA 4R6QA 4PIFA 3LLYA 3R52A 1WS4C 1UGWA 1XXQA 4AKCA 1UGWC 1XXRA 4R6PA 4PIUA 1X1VA 1XEZA 5JM1A 3LM1A 2NU5A 2JZ4A 3MITA 1C3KA 4MQ0A 3WOCA 1ZGSA 5AV7A 1WS5C 3VY6A 4WOGA 5J4XA 2GUDA 3VY7A 4R6OA 4AK4A 3LL0A 4R6RA 1UGYA 1VBPA 3LL1A 1C3MA 3WOBA 1J4SA 1UGYC 5J50A 3P8SA 3MIUA 2HYRA 1UH0A 2NUOA 1ZGRA 1J4UA 4GX7A 1JOTA 3O44A 4DDNA 2GUXA 3LLZA 5BN6E 3VZFA 5J4TA 2BMZA 1TOQA 1PXDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C3N A;  3LKY A;  1J4T A;  2BN0 A;  1VBO A;  3VZE A;  3MIV A;  1UH1 A;  1TP8 A;  1UGX A;  2HYQ A;  4AKD A;  4PIK A;  3APA A;  1JAC A;  3AQG A;  1M26 A;  3R50 A;  3VZG A;  3LL2 A;  4AKB A;  4R6N A;  2BMY A;  5J51 A;  1OUW A;  1KUJ A;  1WS5 A;  4PIT A;  2GTY A;  2GUC A;  2GUE A;  1WS4 A;  3R51 A;  1KU8 A;  5EXG A;  4R6Q A;  4PIF A;  3LLY A;  3R52 A;  1WS4 C;  1UGW A;  1XXQ A;  4AKC A;  1UGW C;  1XXR A;  4R6P A;  4PIU A;  1X1V A;  1XEZ A;  5JM1 A;  3LM1 A;  2NU5 A;  2JZ4 A;  3MIT A;  1C3K A;  4MQ0 A;  3WOC A;  1ZGS A;  5AV7 A;  1WS5 C;  3VY6 A;  4WOG A;  5J4X A;  2GUD A;  3VY7 A;  4R6O A;  4AK4 A;  3LL0 A;  4R6R A;  1UGY A;  1VBP A;  3LL1 A;  1C3M A;  3WOB A;  1J4S A;  1UGY C;  5J50 A;  3P8S A;  3MIU A;  2HYR A;  1UH0 A;  2NUO A;  1ZGR A;  1J4U A;  4GX7 A;  1JOT A;  3O44 A;  4DDN A;  2GUX A;  3LLZ A;  5BN6 E;  3VZF A;  5J4T A;  2BMZ A;  1TOQ A;  1PXD A; 
#chains in the Genus database with same CATH topology
 1C3N A;  3LKY A;  1J4T A;  2BN0 A;  1VBO A;  3VZE A;  4MOA A;  3MIV A;  1UH1 A;  1TP8 A;  1UGX A;  1I5P A;  4QX1 A;  2HYQ A;  4AKD A;  4PIK A;  2C9K A;  3APA A;  1JAC A;  3AQG A;  1JI6 A;  1M26 A;  3R50 A;  3EB7 A;  3VZG A;  3LL2 A;  4AKB A;  4R6N A;  3TOW A;  2BMY A;  5J51 A;  1OUW A;  1KUJ A;  1WS5 A;  4PIT A;  2GTY A;  2GUC A;  2GUE A;  1W99 A;  1WS4 A;  3R51 A;  1KU8 A;  5EXG A;  4R6Q A;  4PIF A;  3LLY A;  3R52 A;  1WS4 C;  1UGW A;  1XXQ A;  4AKC A;  1UGW C;  1XXR A;  4R6P A;  4PIU A;  1X1V A;  1XEZ A;  5JM1 A;  3LM1 A;  2NU5 A;  2JZ4 A;  4D8M A;  3MIT A;  4W8J A;  1C3K A;  4MQ0 A;  3WOC A;  2QP2 A;  1ZGS A;  4ARY A;  5AV7 A;  1CIY A;  1WS5 C;  3VY6 A;  4WOG A;  4QX3 A;  2GUD A;  5J4X A;  3VY7 A;  4R6O A;  4AK4 A;  3LL0 A;  4R6R A;  1UGY A;  1VBP A;  3LL1 A;  1C3M A;  3WOB A;  1J4S A;  1UGY C;  5J50 A;  4QX0 A;  3P8S A;  3MIU A;  2HYR A;  1UH0 A;  2NUO A;  4QX2 A;  1ZGR A;  1J4U A;  1VMO A;  4GX7 A;  1DLC A;  1JOT A;  3O44 A;  4DDN A;  4ARX A;  2GUX A;  3LLZ A;  5BN6 E;  3VZF A;  5J4T A;  2BMZ A;  1TOQ A;  1PXD A; 
#chains in the Genus database with same CATH homology
 1C3N A;  3LKY A;  1J4T A;  2BN0 A;  1VBO A;  3VZE A;  3MIV A;  1UH1 A;  1TP8 A;  1UGX A;  2HYQ A;  4AKD A;  4PIK A;  3APA A;  1JAC A;  3AQG A;  1M26 A;  3R50 A;  3VZG A;  3LL2 A;  4AKB A;  4R6N A;  2BMY A;  5J51 A;  1OUW A;  1KUJ A;  1WS5 A;  4PIT A;  2GTY A;  2GUC A;  2GUE A;  1WS4 A;  3R51 A;  1KU8 A;  5EXG A;  4R6Q A;  4PIF A;  3LLY A;  3R52 A;  1WS4 C;  1UGW A;  1XXQ A;  4AKC A;  1UGW C;  1XXR A;  4R6P A;  4PIU A;  1X1V A;  1XEZ A;  5JM1 A;  3LM1 A;  2NU5 A;  2JZ4 A;  3MIT A;  1C3K A;  4MQ0 A;  3WOC A;  1ZGS A;  5AV7 A;  1WS5 C;  3VY6 A;  4WOG A;  5J4X A;  2GUD A;  3VY7 A;  4R6O A;  4AK4 A;  3LL0 A;  4R6R A;  1UGY A;  1VBP A;  3LL1 A;  1C3M A;  3WOB A;  1J4S A;  1UGY C;  5J50 A;  3P8S A;  3MIU A;  2HYR A;  1UH0 A;  2NUO A;  1ZGR A;  1J4U A;  4GX7 A;  1JOT A;  3O44 A;  4DDN A;  2GUX A;  3LLZ A;  5BN6 E;  3VZF A;  5J4T A;  2BMZ A;  1TOQ A;  1PXD A; 
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