1SAW | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	217
structure length	206
Chain Sequence	RPLSRFWEWGKNIVCVGRNYASEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 206 atoms

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206 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Homo sapiens
publication title	X-ray structure of fumarylacetoacetate hydrolase family member Homo sapiens FLJ36880. pubmed doi rcsb
molecule keywords	hypothetical protein FLJ36880
total genus	56
structure length	206
sequence length	217
chains with identical sequence	B
ec nomenclature	ec 3.7.1.5: Acylpyruvate hydrolase.
pdb deposition date	2004-02-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	1sawA00

3LZKA 4DBHA 4QKUA 3S52A 3RR6A 1NR9A 1WZOA 2Q1DX 1I7OA 1HYOA 2Q19X 4MAQA 2DFUA 1GTTA 2HZYA 4PFZA 3BQBA 2EB4A 1SV6A 3R6OA 1QCNA 3V77A 1QCOA 2Q1CX 5D2JA 3QDFA 1QQJA 2Q18X 5D2FA 4DBFA 5D2IA 2EB6A 2EB5A 2Q1AX 2WQTA 1NKQA 5D2KA 1SAWA 5D2GA 5D2HA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3LZK A;  4DBH A;  4QKU A;  3S52 A;  3RR6 A;  1NR9 A;  1WZO A;  2Q1D X;  1I7O A;  1HYO A;  2Q19 X;  4MAQ A;  2DFU A;  1GTT A;  2HZY A;  4PFZ A;  3BQB A;  2EB4 A;  1SV6 A;  3R6O A;  1QCN A;  3V77 A;  1QCO A;  2Q1C X;  5D2J A;  3QDF A;  1QQJ A;  2Q18 X;  5D2F A;  4DBF A;  5D2I A;  2EB6 A;  2EB5 A;  2Q1A X;  2WQT A;  1NKQ A;  5D2K A;  1SAW A;  5D2G A;  5D2H A; 
#chains in the Genus database with same CATH topology
 3LZK A;  4DBH A;  4QKU A;  3S52 A;  3RR6 A;  1NR9 A;  1WZO A;  2Q1D X;  1I7O A;  1HYO A;  2Q19 X;  4MAQ A;  2DFU A;  1GTT A;  2HZY A;  4PFZ A;  3BQB A;  2EB4 A;  1SV6 A;  3R6O A;  1QCN A;  3V77 A;  1QCO A;  2Q1C X;  5D2J A;  3QDF A;  1QQJ A;  2Q18 X;  5D2F A;  4DBF A;  5D2I A;  2EB6 A;  2EB5 A;  2Q1A X;  2WQT A;  1NKQ A;  5D2K A;  1SAW A;  5D2G A;  5D2H A; 
#chains in the Genus database with same CATH homology
 3LZK A;  4DBH A;  4QKU A;  3S52 A;  3RR6 A;  1NR9 A;  1WZO A;  2Q1D X;  1I7O A;  1HYO A;  2Q19 X;  4MAQ A;  2DFU A;  1GTT A;  2HZY A;  4PFZ A;  3BQB A;  2EB4 A;  1SV6 A;  3R6O A;  1QCN A;  3V77 A;  1QCO A;  2Q1C X;  5D2J A;  3QDF A;  1QQJ A;  2Q18 X;  5D2F A;  4DBF A;  5D2I A;  2EB6 A;  2EB5 A;  2Q1A X;  2WQT A;  1NKQ A;  5D2K A;  1SAW A;  5D2G A;  5D2H A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SAWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations