1SV6 | Genus

Total Genus 77

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	77
sequence length	261
structure length	261
Chain Sequence	MTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 261 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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261 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	Crystal structure of 2-hydroxypentadienoic acid hydratase from Escherichia Coli rcsb
molecule keywords	2-keto-4-pentenoate hydratase
total genus	77
structure length	261
sequence length	261
chains with identical sequence	B, C, D, E
ec nomenclature	ec 4.2.1.80: 2-oxopent-4-enoate hydratase.
pdb deposition date	2004-03-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	1sv6A00

2Q1CX 1QCNA 2DFUA 1WZOA 3S52A 5D2IA 5D2HA 1NKQA 5D2FA 5D2JA 3QDFA 1HYOA 1I7OA 1NR9A 1QQJA 4QKUA 2WQTA 3BQBA 1SAWA 4PFZA 3LZKA 2Q1AX 2Q1DX 3V77A 2EB4A 4MAQA 1QCOA 3R6OA 2Q18X 2EB5A 4DBHA 4DBFA 2HZYA 5D2KA 1SV6A 2EB6A 1GTTA 2Q19X 3RR6A 5D2GA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2Q1C X;  1QCN A;  2DFU A;  1WZO A;  3S52 A;  5D2I A;  5D2H A;  1NKQ A;  5D2F A;  5D2J A;  3QDF A;  1HYO A;  1I7O A;  1NR9 A;  1QQJ A;  4QKU A;  2WQT A;  3BQB A;  1SAW A;  4PFZ A;  3LZK A;  2Q1A X;  2Q1D X;  3V77 A;  2EB4 A;  4MAQ A;  1QCO A;  3R6O A;  2Q18 X;  2EB5 A;  4DBH A;  4DBF A;  2HZY A;  5D2K A;  1SV6 A;  2EB6 A;  1GTT A;  2Q19 X;  3RR6 A;  5D2G A; 
#chains in the Genus database with same CATH topology
 2Q1C X;  1QCN A;  2DFU A;  1WZO A;  3S52 A;  5D2I A;  5D2H A;  1NKQ A;  5D2F A;  5D2J A;  3QDF A;  1HYO A;  1I7O A;  1NR9 A;  1QQJ A;  4QKU A;  2WQT A;  3BQB A;  1SAW A;  4PFZ A;  3LZK A;  2Q1A X;  2Q1D X;  3V77 A;  2EB4 A;  4MAQ A;  1QCO A;  3R6O A;  2Q18 X;  2EB5 A;  4DBH A;  4DBF A;  2HZY A;  5D2K A;  1SV6 A;  2EB6 A;  1GTT A;  2Q19 X;  3RR6 A;  5D2G A; 
#chains in the Genus database with same CATH homology
 2Q1C X;  1QCN A;  2DFU A;  1WZO A;  3S52 A;  5D2I A;  5D2H A;  1NKQ A;  5D2F A;  5D2J A;  3QDF A;  1HYO A;  1I7O A;  1NR9 A;  1QQJ A;  4QKU A;  2WQT A;  3BQB A;  1SAW A;  4PFZ A;  3LZK A;  2Q1A X;  2Q1D X;  3V77 A;  2EB4 A;  4MAQ A;  1QCO A;  3R6O A;  2Q18 X;  2EB5 A;  4DBH A;  4DBF A;  2HZY A;  5D2K A;  1SV6 A;  2EB6 A;  1GTT A;  2Q19 X;  3RR6 A;  5D2G A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1SV6A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations