1TBG | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	68
structure length	68
Chain Sequence	APVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 68 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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68 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Crystal structure of a G-protein beta gamma dimer at 2.1A resolution. pubmed doi rcsb
molecule keywords	TRANSDUCIN
molecule tags	Complex (gtp-binding/transducer)
total genus	17
structure length	68
sequence length	68
chains with identical sequence	F, G, H
ec nomenclature
pdb deposition date	1996-06-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	1tbgE00

5TDHG 2TRCG 1GOTG 3AH8G 3PVWG 3KRXG 2PBIA 1A0RG 5HE1G 3PVUG 3KRWG 5HE3G 1GG2G 4KFMG 1TBGE 1B9YB 3V5WG 5HE0G 4MK0G 5HE2G 5KDOG 1XHMB 3CIKG 3SN6G 1OMWG 1GP2G 4PNKG 3PSCG 2BCJG 1B9XB
chains in the Genus database with same CATH superfamily

5TDHG 2TRCG 1GOTG 3AH8G 3PVWG 3KRXG 2PBIA 1A0RG 5HE1G 3PVUG 3KRWG 5HE3G 1GG2G 4KFMG 1TBGE 1B9YB 1HFES 3V5WG 5HE0G 4MK0G 5HE2G 5KDOG 1XHMB 3CIKG 3SN6G 1OMWG 1IOJA 1GP2G 4PNKG 3PSCG 2BCJG 1B9XB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5TDH G;  2TRC G;  1GOT G;  3AH8 G;  3PVW G;  3KRX G;  2PBI A;  1A0R G;  5HE1 G;  3PVU G;  3KRW G;  5HE3 G;  1GG2 G;  4KFM G;  1TBG E;  1B9Y B;  3V5W G;  5HE0 G;  4MK0 G;  5HE2 G;  5KDO G;  1XHM B;  3CIK G;  3SN6 G;  1OMW G;  1GP2 G;  4PNK G;  3PSC G;  2BCJ G;  1B9X B; 
#chains in the Genus database with same CATH topology
 5TDH G;  2TRC G;  1GOT G;  3AH8 G;  3PVW G;  3KRX G;  2PBI A;  1A0R G;  5HE1 G;  3PVU G;  3KRW G;  5HE3 G;  1GG2 G;  4KFM G;  1TBG E;  1B9Y B;  1HFE S;  3V5W G;  5HE0 G;  4MK0 G;  5HE2 G;  5KDO G;  1XHM B;  3CIK G;  3SN6 G;  1OMW G;  1IOJ A;  1GP2 G;  4PNK G;  3PSC G;  2BCJ G;  1B9X B; 
#chains in the Genus database with same CATH homology
 5TDH G;  2TRC G;  1GOT G;  3AH8 G;  3PVW G;  3KRX G;  2PBI A;  1A0R G;  5HE1 G;  3PVU G;  3KRW G;  5HE3 G;  1GG2 G;  4KFM G;  1TBG E;  1B9Y B;  3V5W G;  5HE0 G;  4MK0 G;  5HE2 G;  5KDO G;  1XHM B;  3CIK G;  3SN6 G;  1OMW G;  1GP2 G;  4PNK G;  3PSC G;  2BCJ G;  1B9X B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1TBGE

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization