1TOQA

Crystal structure of a galactose specific lectin from artocarpus hirsuta in complex with methyl-a-d-galactose
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDFPSEYITEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWMDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two orthorhombic crystal structures of a galactose-specific lectin from Artocarpus hirsuta in complex with methyl-alpha-D-galactose.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords AGGLUTININ ALPHA CHAIN
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2004-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1toqA00
2BMYA 3O44A 2HYRA 1C3KA 1ZGRA 3VZGA 4AKDA 4PIKA 3MIVA 1ZGSA 3LL1A 1J4SA 3LKYA 3VZEA 1OUWA 1XXRA 3LM1A 1JOTA 4AKCA 3AQGA 2NUOA 3LLZA 5JM1A 1WS4C 1UH1A 4AKBA 2BMZA 3MIUA 1UGWC 2GTYA 1JACA 1C3NA 1VBOA 3VZFA 2NU5A 1WS5C 3P8SA 3R50A 3R52A 1TP8A 2GUXA 4R6NA 4MQ0A 5AV7A 4WOGA 1UH0A 3WOCA 1KUJA 4GX7A 4R6RA 3APAA 5BN6E 1UGXA 1PXDA 3WOBA 1J4UA 2GUCA 1XEZA 4DDNA 5J4TA 1XXQA 1WS4A 1TOQA 3LL2A 1UGYC 3LLYA 1J4TA 2JZ4A 3R51A 1M26A 4R6QA 2GUDA 1VBPA 3MITA 1UGWA 3VY6A 4PIFA 3LL0A 1C3MA 3VY7A 2GUEA 5EXGA 1WS5A 2HYQA 4AK4A 1KU8A 4PIUA 4R6OA 1UGYA 4PITA 4R6PA 2BN0A 1X1VA 5J4XA 5J51A 5J50A
chains in the Genus database with same CATH superfamily
2BMYA 3O44A 2HYRA 1C3KA 1ZGRA 3VZGA 4W8JA 4AKDA 4PIKA 3MIVA 1ZGSA 3LL1A 1J4SA 3LKYA 3VZEA 1OUWA 1XXRA 3LM1A 1JOTA 4AKCA 4QX0A 3AQGA 2NUOA 3LLZA 5JM1A 1WS4C 1UH1A 1JI6A 4AKBA 2BMZA 3MIUA 1UGWC 2GTYA 1JACA 1C3NA 1VBOA 3VZFA 2NU5A 3EB7A 1WS5C 1VMOA 3P8SA 4ARYA 3R50A 3R52A 1TP8A 2GUXA 4R6NA 4MQ0A 4QX1A 5AV7A 4WOGA 4D8MA 1UH0A 3WOCA 1KUJA 4GX7A 4R6RA 3APAA 5BN6E 1UGXA 4MOAA 1PXDA 3WOBA 1DLCA 1J4UA 2GUCA 1XEZA 4DDNA 5J4TA 1XXQA 3TOWA 1WS4A 1TOQA 3LL2A 4ARXA 1UGYC 3LLYA 1J4TA 2C9KA 4QX3A 2JZ4A 3R51A 1I5PA 1M26A 4R6QA 2GUDA 1VBPA 3MITA 1UGWA 3VY6A 4PIFA 3LL0A 1C3MA 3VY7A 4QX2A 2GUEA 5EXGA 1WS5A 2HYQA 2QP2A 4AK4A 1KU8A 4PIUA 4R6OA 1CIYA 1UGYA 4PITA 1W99A 4R6PA 2BN0A 1X1VA 5J4XA 5J51A 5J50A
chains in the Genus database with same CATH topology
2BMYA 3O44A 2HYRA 1C3KA 1ZGRA 3VZGA 4AKDA 4PIKA 3MIVA 1ZGSA 3LL1A 1J4SA 3LKYA 3VZEA 1OUWA 1XXRA 3LM1A 1JOTA 4AKCA 3AQGA 2NUOA 3LLZA 5JM1A 1WS4C 1UH1A 4AKBA 2BMZA 3MIUA 1UGWC 2GTYA 1JACA 1C3NA 1VBOA 3VZFA 2NU5A 1WS5C 3P8SA 3R50A 3R52A 1TP8A 2GUXA 4R6NA 4MQ0A 5AV7A 4WOGA 1UH0A 3WOCA 1KUJA 4GX7A 4R6RA 3APAA 5BN6E 1UGXA 1PXDA 3WOBA 1J4UA 2GUCA 1XEZA 4DDNA 5J4TA 1XXQA 1WS4A 1TOQA 3LL2A 1UGYC 3LLYA 1J4TA 2JZ4A 3R51A 1M26A 4R6QA 2GUDA 1VBPA 3MITA 1UGWA 3VY6A 4PIFA 3LL0A 1C3MA 3VY7A 2GUEA 5EXGA 1WS5A 2HYQA 4AK4A 1KU8A 4PIUA 4R6OA 1UGYA 4PITA 4R6PA 2BN0A 1X1VA 5J4XA 5J51A 5J50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMY A;  3O44 A;  2HYR A;  1C3K A;  1ZGR A;  3VZG A;  4AKD A;  4PIK A;  3MIV A;  1ZGS A;  3LL1 A;  1J4S A;  3LKY A;  3VZE A;  1OUW A;  1XXR A;  3LM1 A;  1JOT A;  4AKC A;  3AQG A;  2NUO A;  3LLZ A;  5JM1 A;  1WS4 C;  1UH1 A;  4AKB A;  2BMZ A;  3MIU A;  1UGW C;  2GTY A;  1JAC A;  1C3N A;  1VBO A;  3VZF A;  2NU5 A;  1WS5 C;  3P8S A;  3R50 A;  3R52 A;  1TP8 A;  2GUX A;  4R6N A;  4MQ0 A;  5AV7 A;  4WOG A;  1UH0 A;  3WOC A;  1KUJ A;  4GX7 A;  4R6R A;  3APA A;  5BN6 E;  1UGX A;  1PXD A;  3WOB A;  1J4U A;  2GUC A;  1XEZ A;  4DDN A;  5J4T A;  1XXQ A;  1WS4 A;  1TOQ A;  3LL2 A;  1UGY C;  3LLY A;  1J4T A;  2JZ4 A;  3R51 A;  1M26 A;  4R6Q A;  2GUD A;  1VBP A;  3MIT A;  1UGW A;  3VY6 A;  4PIF A;  3LL0 A;  1C3M A;  3VY7 A;  2GUE A;  5EXG A;  1WS5 A;  2HYQ A;  4AK4 A;  1KU8 A;  4PIU A;  4R6O A;  1UGY A;  4PIT A;  4R6P A;  2BN0 A;  1X1V A;  5J4X A;  5J51 A;  5J50 A; 
#chains in the Genus database with same CATH topology
 2BMY A;  3O44 A;  2HYR A;  1C3K A;  1ZGR A;  3VZG A;  4W8J A;  4AKD A;  4PIK A;  3MIV A;  1ZGS A;  3LL1 A;  1J4S A;  3LKY A;  3VZE A;  1OUW A;  1XXR A;  3LM1 A;  1JOT A;  4AKC A;  4QX0 A;  3AQG A;  2NUO A;  3LLZ A;  5JM1 A;  1WS4 C;  1UH1 A;  1JI6 A;  4AKB A;  2BMZ A;  3MIU A;  1UGW C;  2GTY A;  1JAC A;  1C3N A;  1VBO A;  3VZF A;  2NU5 A;  3EB7 A;  1WS5 C;  1VMO A;  3P8S A;  4ARY A;  3R50 A;  3R52 A;  1TP8 A;  2GUX A;  4R6N A;  4MQ0 A;  4QX1 A;  5AV7 A;  4WOG A;  4D8M A;  1UH0 A;  3WOC A;  1KUJ A;  4GX7 A;  4R6R A;  3APA A;  5BN6 E;  1UGX A;  4MOA A;  1PXD A;  3WOB A;  1DLC A;  1J4U A;  2GUC A;  1XEZ A;  4DDN A;  5J4T A;  1XXQ A;  3TOW A;  1WS4 A;  1TOQ A;  3LL2 A;  4ARX A;  1UGY C;  3LLY A;  1J4T A;  2C9K A;  4QX3 A;  2JZ4 A;  3R51 A;  1I5P A;  1M26 A;  4R6Q A;  2GUD A;  1VBP A;  3MIT A;  1UGW A;  3VY6 A;  4PIF A;  3LL0 A;  1C3M A;  3VY7 A;  4QX2 A;  2GUE A;  5EXG A;  1WS5 A;  2HYQ A;  2QP2 A;  4AK4 A;  1KU8 A;  4PIU A;  4R6O A;  1CIY A;  1UGY A;  4PIT A;  1W99 A;  4R6P A;  2BN0 A;  1X1V A;  5J4X A;  5J51 A;  5J50 A; 
#chains in the Genus database with same CATH homology
 2BMY A;  3O44 A;  2HYR A;  1C3K A;  1ZGR A;  3VZG A;  4AKD A;  4PIK A;  3MIV A;  1ZGS A;  3LL1 A;  1J4S A;  3LKY A;  3VZE A;  1OUW A;  1XXR A;  3LM1 A;  1JOT A;  4AKC A;  3AQG A;  2NUO A;  3LLZ A;  5JM1 A;  1WS4 C;  1UH1 A;  4AKB A;  2BMZ A;  3MIU A;  1UGW C;  2GTY A;  1JAC A;  1C3N A;  1VBO A;  3VZF A;  2NU5 A;  1WS5 C;  3P8S A;  3R50 A;  3R52 A;  1TP8 A;  2GUX A;  4R6N A;  4MQ0 A;  5AV7 A;  4WOG A;  1UH0 A;  3WOC A;  1KUJ A;  4GX7 A;  4R6R A;  3APA A;  5BN6 E;  1UGX A;  1PXD A;  3WOB A;  1J4U A;  2GUC A;  1XEZ A;  4DDN A;  5J4T A;  1XXQ A;  1WS4 A;  1TOQ A;  3LL2 A;  1UGY C;  3LLY A;  1J4T A;  2JZ4 A;  3R51 A;  1M26 A;  4R6Q A;  2GUD A;  1VBP A;  3MIT A;  1UGW A;  3VY6 A;  4PIF A;  3LL0 A;  1C3M A;  3VY7 A;  2GUE A;  5EXG A;  1WS5 A;  2HYQ A;  4AK4 A;  1KU8 A;  4PIU A;  4R6O A;  1UGY A;  4PIT A;  4R6P A;  2BN0 A;  1X1V A;  5J4X A;  5J51 A;  5J50 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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