1TOQA

Crystal structure of a galactose specific lectin from artocarpus hirsuta in complex with methyl-a-d-galactose
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDFPSEYITEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWMDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two orthorhombic crystal structures of a galactose-specific lectin from Artocarpus hirsuta in complex with methyl-alpha-D-galactose.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords AGGLUTININ ALPHA CHAIN
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2004-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1toqA00
1WS4C 1XXRA 4AKBA 4MQ0A 1PXDA 4AKDA 2GUCA 1OUWA 3VY6A 1JOTA 5AV7A 5J50A 2NUOA 3VZFA 5EXGA 5J4TA 3MIVA 1C3MA 2NU5A 2BMYA 3LKYA 2JZ4A 4WOGA 1J4SA 3LL2A 3WOBA 1J4TA 3MITA 1UH1A 5JM1A 3VZGA 1UH0A 3P8SA 3LM1A 3O44A 4DDNA 2HYRA 1ZGRA 1WS4A 3R52A 1TOQA 3MIUA 1WS5C 1J4UA 1VBPA 1UGYC 4PIKA 4PIFA 4AK4A 4AKCA 1XEZA 1M26A 5J4XA 4PIUA 3R50A 1C3KA 1JACA 2HYQA 1UGWC 1C3NA 2GTYA 4GX7A 3LL0A 3WOCA 3LLYA 1X1VA 3R51A 2GUDA 2GUXA 5BN6E 1TP8A 3VZEA 5J51A 2BN0A 4R6PA 3VY7A 1WS5A 1XXQA 1ZGSA 4PITA 1UGYA 3LLZA 1KU8A 3LL1A 1KUJA 2BMZA 2GUEA 3APAA 3AQGA 4R6QA 4R6RA 1UGXA 4R6NA 1VBOA 1UGWA 4R6OA
chains in the Genus database with same CATH superfamily
1WS4C 1XXRA 4AKBA 4MQ0A 1PXDA 4AKDA 2GUCA 1OUWA 4W8JA 1DLCA 3VY6A 1JOTA 5AV7A 5J50A 2NUOA 3VZFA 5EXGA 5J4TA 3MIVA 1C3MA 2NU5A 2BMYA 3LKYA 2JZ4A 4WOGA 1J4SA 3LL2A 3WOBA 1W99A 1CIYA 4QX0A 1J4TA 4MOAA 3TOWA 3MITA 4ARYA 1UH1A 5JM1A 3EB7A 3VZGA 4QX2A 1UH0A 3P8SA 3LM1A 3O44A 4DDNA 2HYRA 1ZGRA 1WS4A 3R52A 1TOQA 3MIUA 1WS5C 1JI6A 1J4UA 1VBPA 1UGYC 4PIKA 4PIFA 4AK4A 4AKCA 1XEZA 1M26A 5J4XA 4PIUA 3R50A 1C3KA 1JACA 2HYQA 1UGWC 2C9KA 1C3NA 2GTYA 4GX7A 3LL0A 3WOCA 4QX1A 3LLYA 1X1VA 3R51A 2GUDA 2GUXA 5BN6E 1TP8A 4D8MA 3VZEA 5J51A 2BN0A 4R6PA 3VY7A 1WS5A 1XXQA 2QP2A 1ZGSA 1VMOA 4PITA 3LLZA 1UGYA 1KU8A 3LL1A 1KUJA 2BMZA 2GUEA 1I5PA 3APAA 3AQGA 4R6QA 4ARXA 4QX3A 1UGXA 4R6NA 4R6RA 1VBOA 1UGWA 4R6OA
chains in the Genus database with same CATH topology
1WS4C 1XXRA 4AKBA 4MQ0A 1PXDA 4AKDA 2GUCA 1OUWA 3VY6A 1JOTA 5AV7A 5J50A 2NUOA 3VZFA 5EXGA 5J4TA 3MIVA 1C3MA 2NU5A 2BMYA 3LKYA 2JZ4A 4WOGA 1J4SA 3LL2A 3WOBA 1J4TA 3MITA 1UH1A 5JM1A 3VZGA 1UH0A 3P8SA 3LM1A 3O44A 4DDNA 2HYRA 1ZGRA 1WS4A 3R52A 1TOQA 3MIUA 1WS5C 1J4UA 1VBPA 1UGYC 4PIKA 4PIFA 4AK4A 4AKCA 1XEZA 1M26A 5J4XA 4PIUA 3R50A 1C3KA 1JACA 2HYQA 1UGWC 1C3NA 2GTYA 4GX7A 3LL0A 3WOCA 3LLYA 1X1VA 3R51A 2GUDA 2GUXA 5BN6E 1TP8A 3VZEA 5J51A 2BN0A 4R6PA 3VY7A 1WS5A 1XXQA 1ZGSA 4PITA 1UGYA 3LLZA 1KU8A 3LL1A 1KUJA 2BMZA 2GUEA 3APAA 3AQGA 4R6QA 4R6RA 1UGXA 4R6NA 1VBOA 1UGWA 4R6OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WS4 C;  1XXR A;  4AKB A;  4MQ0 A;  1PXD A;  4AKD A;  2GUC A;  1OUW A;  3VY6 A;  1JOT A;  5AV7 A;  5J50 A;  2NUO A;  3VZF A;  5EXG A;  5J4T A;  3MIV A;  1C3M A;  2NU5 A;  2BMY A;  3LKY A;  2JZ4 A;  4WOG A;  1J4S A;  3LL2 A;  3WOB A;  1J4T A;  3MIT A;  1UH1 A;  5JM1 A;  3VZG A;  1UH0 A;  3P8S A;  3LM1 A;  3O44 A;  4DDN A;  2HYR A;  1ZGR A;  1WS4 A;  3R52 A;  1TOQ A;  3MIU A;  1WS5 C;  1J4U A;  1VBP A;  1UGY C;  4PIK A;  4PIF A;  4AK4 A;  4AKC A;  1XEZ A;  1M26 A;  5J4X A;  4PIU A;  3R50 A;  1C3K A;  1JAC A;  2HYQ A;  1UGW C;  1C3N A;  2GTY A;  4GX7 A;  3LL0 A;  3WOC A;  3LLY A;  1X1V A;  3R51 A;  2GUD A;  2GUX A;  5BN6 E;  1TP8 A;  3VZE A;  5J51 A;  2BN0 A;  4R6P A;  3VY7 A;  1WS5 A;  1XXQ A;  1ZGS A;  4PIT A;  1UGY A;  3LLZ A;  1KU8 A;  3LL1 A;  1KUJ A;  2BMZ A;  2GUE A;  3APA A;  3AQG A;  4R6Q A;  4R6R A;  1UGX A;  4R6N A;  1VBO A;  1UGW A;  4R6O A; 
#chains in the Genus database with same CATH topology
 1WS4 C;  1XXR A;  4AKB A;  4MQ0 A;  1PXD A;  4AKD A;  2GUC A;  1OUW A;  4W8J A;  1DLC A;  3VY6 A;  1JOT A;  5AV7 A;  5J50 A;  2NUO A;  3VZF A;  5EXG A;  5J4T A;  3MIV A;  1C3M A;  2NU5 A;  2BMY A;  3LKY A;  2JZ4 A;  4WOG A;  1J4S A;  3LL2 A;  3WOB A;  1W99 A;  1CIY A;  4QX0 A;  1J4T A;  4MOA A;  3TOW A;  3MIT A;  4ARY A;  1UH1 A;  5JM1 A;  3EB7 A;  3VZG A;  4QX2 A;  1UH0 A;  3P8S A;  3LM1 A;  3O44 A;  4DDN A;  2HYR A;  1ZGR A;  1WS4 A;  3R52 A;  1TOQ A;  3MIU A;  1WS5 C;  1JI6 A;  1J4U A;  1VBP A;  1UGY C;  4PIK A;  4PIF A;  4AK4 A;  4AKC A;  1XEZ A;  1M26 A;  5J4X A;  4PIU A;  3R50 A;  1C3K A;  1JAC A;  2HYQ A;  1UGW C;  2C9K A;  1C3N A;  2GTY A;  4GX7 A;  3LL0 A;  3WOC A;  4QX1 A;  3LLY A;  1X1V A;  3R51 A;  2GUD A;  2GUX A;  5BN6 E;  1TP8 A;  4D8M A;  3VZE A;  5J51 A;  2BN0 A;  4R6P A;  3VY7 A;  1WS5 A;  1XXQ A;  2QP2 A;  1ZGS A;  1VMO A;  4PIT A;  3LLZ A;  1UGY A;  1KU8 A;  3LL1 A;  1KUJ A;  2BMZ A;  2GUE A;  1I5P A;  3APA A;  3AQG A;  4R6Q A;  4ARX A;  4QX3 A;  1UGX A;  4R6N A;  4R6R A;  1VBO A;  1UGW A;  4R6O A; 
#chains in the Genus database with same CATH homology
 1WS4 C;  1XXR A;  4AKB A;  4MQ0 A;  1PXD A;  4AKD A;  2GUC A;  1OUW A;  3VY6 A;  1JOT A;  5AV7 A;  5J50 A;  2NUO A;  3VZF A;  5EXG A;  5J4T A;  3MIV A;  1C3M A;  2NU5 A;  2BMY A;  3LKY A;  2JZ4 A;  4WOG A;  1J4S A;  3LL2 A;  3WOB A;  1J4T A;  3MIT A;  1UH1 A;  5JM1 A;  3VZG A;  1UH0 A;  3P8S A;  3LM1 A;  3O44 A;  4DDN A;  2HYR A;  1ZGR A;  1WS4 A;  3R52 A;  1TOQ A;  3MIU A;  1WS5 C;  1J4U A;  1VBP A;  1UGY C;  4PIK A;  4PIF A;  4AK4 A;  4AKC A;  1XEZ A;  1M26 A;  5J4X A;  4PIU A;  3R50 A;  1C3K A;  1JAC A;  2HYQ A;  1UGW C;  1C3N A;  2GTY A;  4GX7 A;  3LL0 A;  3WOC A;  3LLY A;  1X1V A;  3R51 A;  2GUD A;  2GUX A;  5BN6 E;  1TP8 A;  3VZE A;  5J51 A;  2BN0 A;  4R6P A;  3VY7 A;  1WS5 A;  1XXQ A;  1ZGS A;  4PIT A;  1UGY A;  3LLZ A;  1KU8 A;  3LL1 A;  1KUJ A;  2BMZ A;  2GUE A;  3APA A;  3AQG A;  4R6Q A;  4R6R A;  1UGX A;  4R6N A;  1VBO A;  1UGW A;  4R6O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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