1TOQ | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDFPSEYITEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWMDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Two orthorhombic crystal structures of a galactose-specific lectin from Artocarpus hirsuta in complex with methyl-alpha-D-galactose. pubmed doi rcsb
molecule keywords	AGGLUTININ ALPHA CHAIN
total genus	29
structure length	133
sequence length	133
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2004-06-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1toqA00

1XXRA 4R6QA 3R51A 1PXDA 3VZEA 4R6OA 4AKDA 1JOTA 1UH0A 2GUEA 3LLYA 3VY7A 4MQ0A 4R6RA 5BN6E 1WS4C 3MIUA 2GUXA 3MIVA 1KU8A 1XXQA 1VBPA 2NUOA 5JM1A 1C3MA 1C3NA 4DDNA 3LL0A 4PIKA 4PIFA 1UGXA 2BMYA 4R6PA 1X1VA 2GTYA 2BN0A 1ZGRA 1WS5C 5J50A 3VZGA 1UGWA 1J4TA 1XEZA 1VBOA 3VZFA 1M26A 4AKBA 5J4XA 4PITA 1JACA 3O44A 1TOQA 4WOGA 1UGYA 1OUWA 2HYRA 3AQGA 2JZ4A 1C3KA 4PIUA 3LM1A 3WOBA 3LKYA 4AKCA 3LLZA 5J51A 5EXGA 1ZGSA 3APAA 1J4SA 1UGWC 3LL1A 2HYQA 4AK4A 3R50A 4GX7A 1UH1A 5J4TA 3MITA 2GUCA 3WOCA 3R52A 1KUJA 2NU5A 5AV7A 4R6NA 1WS5A 1UGYC 3VY6A 1WS4A 2BMZA 3LL2A 1J4UA 3P8SA 2GUDA 1TP8A
chains in the Genus database with same CATH superfamily

1XXRA 4R6QA 4QX2A 3R51A 1PXDA 4QX0A 3VZEA 4W8JA 4R6OA 2C9KA 4AKDA 1JOTA 1UH0A 2GUEA 3LLYA 1I5PA 3TOWA 3VY7A 4MQ0A 4R6RA 5BN6E 1WS4C 3MIUA 1DLCA 2GUXA 3MIVA 1KU8A 1XXQA 1VBPA 2NUOA 5JM1A 1C3MA 1C3NA 4DDNA 3LL0A 1JI6A 4PIKA 4PIFA 1UGXA 2BMYA 4R6PA 1X1VA 2GTYA 2BN0A 1ZGRA 1WS5C 5J50A 3VZGA 1UGWA 1J4TA 1XEZA 1CIYA 1VBOA 3VZFA 1M26A 4QX3A 4ARXA 4AKBA 5J4XA 4PITA 1JACA 3O44A 1TOQA 4WOGA 1UGYA 1OUWA 2HYRA 3AQGA 2JZ4A 1C3KA 3EB7A 4PIUA 4ARYA 3LM1A 4QX1A 3WOBA 3LKYA 4AKCA 3LLZA 5J51A 5EXGA 1ZGSA 3APAA 1J4SA 1UGWC 3LL1A 2HYQA 4AK4A 4MOAA 3R50A 1VMOA 4GX7A 1W99A 1UH1A 5J4TA 3MITA 2GUCA 3WOCA 3R52A 1KUJA 2QP2A 2NU5A 4D8MA 5AV7A 4R6NA 1WS5A 1UGYC 3VY6A 1WS4A 2BMZA 3LL2A 1J4UA 3P8SA 2GUDA 1TP8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1XXR A;  4R6Q A;  3R51 A;  1PXD A;  3VZE A;  4R6O A;  4AKD A;  1JOT A;  1UH0 A;  2GUE A;  3LLY A;  3VY7 A;  4MQ0 A;  4R6R A;  5BN6 E;  1WS4 C;  3MIU A;  2GUX A;  3MIV A;  1KU8 A;  1XXQ A;  1VBP A;  2NUO A;  5JM1 A;  1C3M A;  1C3N A;  4DDN A;  3LL0 A;  4PIK A;  4PIF A;  1UGX A;  2BMY A;  4R6P A;  1X1V A;  2GTY A;  2BN0 A;  1ZGR A;  1WS5 C;  5J50 A;  3VZG A;  1UGW A;  1J4T A;  1XEZ A;  1VBO A;  3VZF A;  1M26 A;  4AKB A;  5J4X A;  4PIT A;  1JAC A;  3O44 A;  1TOQ A;  4WOG A;  1UGY A;  1OUW A;  2HYR A;  3AQG A;  2JZ4 A;  1C3K A;  4PIU A;  3LM1 A;  3WOB A;  3LKY A;  4AKC A;  3LLZ A;  5J51 A;  5EXG A;  1ZGS A;  3APA A;  1J4S A;  1UGW C;  3LL1 A;  2HYQ A;  4AK4 A;  3R50 A;  4GX7 A;  1UH1 A;  5J4T A;  3MIT A;  2GUC A;  3WOC A;  3R52 A;  1KUJ A;  2NU5 A;  5AV7 A;  4R6N A;  1WS5 A;  1UGY C;  3VY6 A;  1WS4 A;  2BMZ A;  3LL2 A;  1J4U A;  3P8S A;  2GUD A;  1TP8 A; 
#chains in the Genus database with same CATH topology
 1XXR A;  4R6Q A;  4QX2 A;  3R51 A;  1PXD A;  4QX0 A;  3VZE A;  4W8J A;  4R6O A;  2C9K A;  4AKD A;  1JOT A;  1UH0 A;  2GUE A;  3LLY A;  1I5P A;  3TOW A;  3VY7 A;  4MQ0 A;  4R6R A;  5BN6 E;  1WS4 C;  3MIU A;  1DLC A;  2GUX A;  3MIV A;  1KU8 A;  1XXQ A;  1VBP A;  2NUO A;  5JM1 A;  1C3M A;  1C3N A;  4DDN A;  3LL0 A;  1JI6 A;  4PIK A;  4PIF A;  1UGX A;  2BMY A;  4R6P A;  1X1V A;  2GTY A;  2BN0 A;  1ZGR A;  1WS5 C;  5J50 A;  3VZG A;  1UGW A;  1J4T A;  1XEZ A;  1CIY A;  1VBO A;  3VZF A;  1M26 A;  4QX3 A;  4ARX A;  4AKB A;  5J4X A;  4PIT A;  1JAC A;  3O44 A;  1TOQ A;  4WOG A;  1UGY A;  1OUW A;  2HYR A;  3AQG A;  2JZ4 A;  1C3K A;  3EB7 A;  4PIU A;  4ARY A;  3LM1 A;  4QX1 A;  3WOB A;  3LKY A;  4AKC A;  3LLZ A;  5J51 A;  5EXG A;  1ZGS A;  3APA A;  1J4S A;  1UGW C;  3LL1 A;  2HYQ A;  4AK4 A;  4MOA A;  3R50 A;  1VMO A;  4GX7 A;  1W99 A;  1UH1 A;  5J4T A;  3MIT A;  2GUC A;  3WOC A;  3R52 A;  1KUJ A;  2QP2 A;  2NU5 A;  4D8M A;  5AV7 A;  4R6N A;  1WS5 A;  1UGY C;  3VY6 A;  1WS4 A;  2BMZ A;  3LL2 A;  1J4U A;  3P8S A;  2GUD A;  1TP8 A; 
#chains in the Genus database with same CATH homology
 1XXR A;  4R6Q A;  3R51 A;  1PXD A;  3VZE A;  4R6O A;  4AKD A;  1JOT A;  1UH0 A;  2GUE A;  3LLY A;  3VY7 A;  4MQ0 A;  4R6R A;  5BN6 E;  1WS4 C;  3MIU A;  2GUX A;  3MIV A;  1KU8 A;  1XXQ A;  1VBP A;  2NUO A;  5JM1 A;  1C3M A;  1C3N A;  4DDN A;  3LL0 A;  4PIK A;  4PIF A;  1UGX A;  2BMY A;  4R6P A;  1X1V A;  2GTY A;  2BN0 A;  1ZGR A;  1WS5 C;  5J50 A;  3VZG A;  1UGW A;  1J4T A;  1XEZ A;  1VBO A;  3VZF A;  1M26 A;  4AKB A;  5J4X A;  4PIT A;  1JAC A;  3O44 A;  1TOQ A;  4WOG A;  1UGY A;  1OUW A;  2HYR A;  3AQG A;  2JZ4 A;  1C3K A;  4PIU A;  3LM1 A;  3WOB A;  3LKY A;  4AKC A;  3LLZ A;  5J51 A;  5EXG A;  1ZGS A;  3APA A;  1J4S A;  1UGW C;  3LL1 A;  2HYQ A;  4AK4 A;  3R50 A;  4GX7 A;  1UH1 A;  5J4T A;  3MIT A;  2GUC A;  3WOC A;  3R52 A;  1KUJ A;  2NU5 A;  5AV7 A;  4R6N A;  1WS5 A;  1UGY C;  3VY6 A;  1WS4 A;  2BMZ A;  3LL2 A;  1J4U A;  3P8S A;  2GUD A;  1TP8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1TOQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations