1TP8A

Crystal structure of a galactose specific lectin from artocarpus hirsuta in complex with methyl-a-d-galactose
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHSSFISGFTPVKISLDFPSEYITEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWMDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Two orthorhombic crystal structures of a galactose-specific lectin from Artocarpus hirsuta in complex with methyl-alpha-D-galactose.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords AGGLUTININ ALPHA CHAIN
total genus 28
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2004-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1tp8A00
1WS4C 1VBPA 4AKDA 1OUWA 4AKCA 1KU8A 5EXGA 3VZEA 1TOQA 4PITA 1UGWA 3VZFA 1C3NA 2NUOA 2JZ4A 5BN6E 3VY6A 3R51A 3R52A 3LL1A 4DDNA 1M26A 1JOTA 2HYRA 3APAA 5J4XA 2GUEA 1ZGRA 1ZGSA 3R50A 1UGYC 2GUCA 5J51A 4GX7A 3LLZA 4R6QA 1XEZA 2BMYA 5J4TA 3MIUA 3LLYA 1UGWC 1KUJA 4R6NA 1UH0A 1XXRA 5JM1A 1J4TA 1JACA 2BN0A 3WOCA 1WS5A 2GUDA 1WS4A 3P8SA 4PIUA 3LL0A 1X1VA 3AQGA 4AKBA 3LM1A 4PIFA 2GTYA 4R6PA 4AK4A 1XXQA 4MQ0A 1PXDA 3LKYA 3LL2A 3VZGA 4WOGA 2GUXA 1UGXA 2BMZA 3O44A 1VBOA 4R6RA 2NU5A 3WOBA 3MIVA 5J50A 3MITA 4R6OA 1J4SA 1TP8A 1UH1A 1C3MA 4PIKA 1C3KA 3VY7A 2HYQA 5AV7A 1WS5C 1J4UA 1UGYA
chains in the Genus database with same CATH superfamily
1WS4C 1VBPA 4AKDA 1OUWA 4AKCA 1KU8A 5EXGA 2QP2A 3VZEA 1TOQA 4ARXA 4PITA 1JI6A 1UGWA 3VZFA 1C3NA 2NUOA 2JZ4A 5BN6E 3VY6A 3R51A 3R52A 1W99A 3LL1A 3TOWA 4DDNA 1M26A 1JOTA 1VMOA 2HYRA 1CIYA 3APAA 5J4XA 2GUEA 1ZGRA 1ZGSA 3R50A 1UGYC 2GUCA 5J51A 4QX0A 1DLCA 4GX7A 3LLZA 4R6QA 1XEZA 4QX1A 2C9KA 2BMYA 1I5PA 5J4TA 3MIUA 3LLYA 1UGWC 1KUJA 4R6NA 1UH0A 1XXRA 5JM1A 1J4TA 1JACA 2BN0A 3WOCA 4D8MA 1WS5A 2GUDA 1WS4A 3P8SA 4PIUA 3LL0A 1X1VA 3AQGA 3EB7A 4AKBA 3LM1A 4PIFA 2GTYA 4R6PA 4AK4A 1XXQA 4MQ0A 1PXDA 3LKYA 3LL2A 3VZGA 4WOGA 2GUXA 1UGXA 2BMZA 3O44A 1VBOA 4R6RA 2NU5A 4QX3A 3WOBA 3MIVA 5J50A 3MITA 4R6OA 1J4SA 4ARYA 1TP8A 1UH1A 1C3MA 4PIKA 1C3KA 3VY7A 2HYQA 4QX2A 5AV7A 4W8JA 1WS5C 1J4UA 1UGYA 4MOAA
chains in the Genus database with same CATH topology
1WS4C 1VBPA 4AKDA 1OUWA 4AKCA 1KU8A 5EXGA 3VZEA 1TOQA 4PITA 1UGWA 3VZFA 1C3NA 2NUOA 2JZ4A 5BN6E 3VY6A 3R51A 3R52A 3LL1A 4DDNA 1M26A 1JOTA 2HYRA 3APAA 5J4XA 2GUEA 1ZGRA 1ZGSA 3R50A 1UGYC 2GUCA 5J51A 4GX7A 3LLZA 4R6QA 1XEZA 2BMYA 5J4TA 3MIUA 3LLYA 1UGWC 1KUJA 4R6NA 1UH0A 1XXRA 5JM1A 1J4TA 1JACA 2BN0A 3WOCA 1WS5A 2GUDA 1WS4A 3P8SA 4PIUA 3LL0A 1X1VA 3AQGA 4AKBA 3LM1A 4PIFA 2GTYA 4R6PA 4AK4A 1XXQA 4MQ0A 1PXDA 3LKYA 3LL2A 3VZGA 4WOGA 2GUXA 1UGXA 2BMZA 3O44A 1VBOA 4R6RA 2NU5A 3WOBA 3MIVA 5J50A 3MITA 4R6OA 1J4SA 1TP8A 1UH1A 1C3MA 4PIKA 1C3KA 3VY7A 2HYQA 5AV7A 1WS5C 1J4UA 1UGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WS4 C;  1VBP A;  4AKD A;  1OUW A;  4AKC A;  1KU8 A;  5EXG A;  3VZE A;  1TOQ A;  4PIT A;  1UGW A;  3VZF A;  1C3N A;  2NUO A;  2JZ4 A;  5BN6 E;  3VY6 A;  3R51 A;  3R52 A;  3LL1 A;  4DDN A;  1M26 A;  1JOT A;  2HYR A;  3APA A;  5J4X A;  2GUE A;  1ZGR A;  1ZGS A;  3R50 A;  1UGY C;  2GUC A;  5J51 A;  4GX7 A;  3LLZ A;  4R6Q A;  1XEZ A;  2BMY A;  5J4T A;  3MIU A;  3LLY A;  1UGW C;  1KUJ A;  4R6N A;  1UH0 A;  1XXR A;  5JM1 A;  1J4T A;  1JAC A;  2BN0 A;  3WOC A;  1WS5 A;  2GUD A;  1WS4 A;  3P8S A;  4PIU A;  3LL0 A;  1X1V A;  3AQG A;  4AKB A;  3LM1 A;  4PIF A;  2GTY A;  4R6P A;  4AK4 A;  1XXQ A;  4MQ0 A;  1PXD A;  3LKY A;  3LL2 A;  3VZG A;  4WOG A;  2GUX A;  1UGX A;  2BMZ A;  3O44 A;  1VBO A;  4R6R A;  2NU5 A;  3WOB A;  3MIV A;  5J50 A;  3MIT A;  4R6O A;  1J4S A;  1TP8 A;  1UH1 A;  1C3M A;  4PIK A;  1C3K A;  3VY7 A;  2HYQ A;  5AV7 A;  1WS5 C;  1J4U A;  1UGY A; 
#chains in the Genus database with same CATH topology
 1WS4 C;  1VBP A;  4AKD A;  1OUW A;  4AKC A;  1KU8 A;  5EXG A;  2QP2 A;  3VZE A;  1TOQ A;  4ARX A;  4PIT A;  1JI6 A;  1UGW A;  3VZF A;  1C3N A;  2NUO A;  2JZ4 A;  5BN6 E;  3VY6 A;  3R51 A;  3R52 A;  1W99 A;  3LL1 A;  3TOW A;  4DDN A;  1M26 A;  1JOT A;  1VMO A;  2HYR A;  1CIY A;  3APA A;  5J4X A;  2GUE A;  1ZGR A;  1ZGS A;  3R50 A;  1UGY C;  2GUC A;  5J51 A;  4QX0 A;  1DLC A;  4GX7 A;  3LLZ A;  4R6Q A;  1XEZ A;  4QX1 A;  2C9K A;  2BMY A;  1I5P A;  5J4T A;  3MIU A;  3LLY A;  1UGW C;  1KUJ A;  4R6N A;  1UH0 A;  1XXR A;  5JM1 A;  1J4T A;  1JAC A;  2BN0 A;  3WOC A;  4D8M A;  1WS5 A;  2GUD A;  1WS4 A;  3P8S A;  4PIU A;  3LL0 A;  1X1V A;  3AQG A;  3EB7 A;  4AKB A;  3LM1 A;  4PIF A;  2GTY A;  4R6P A;  4AK4 A;  1XXQ A;  4MQ0 A;  1PXD A;  3LKY A;  3LL2 A;  3VZG A;  4WOG A;  2GUX A;  1UGX A;  2BMZ A;  3O44 A;  1VBO A;  4R6R A;  2NU5 A;  4QX3 A;  3WOB A;  3MIV A;  5J50 A;  3MIT A;  4R6O A;  1J4S A;  4ARY A;  1TP8 A;  1UH1 A;  1C3M A;  4PIK A;  1C3K A;  3VY7 A;  2HYQ A;  4QX2 A;  5AV7 A;  4W8J A;  1WS5 C;  1J4U A;  1UGY A;  4MOA A; 
#chains in the Genus database with same CATH homology
 1WS4 C;  1VBP A;  4AKD A;  1OUW A;  4AKC A;  1KU8 A;  5EXG A;  3VZE A;  1TOQ A;  4PIT A;  1UGW A;  3VZF A;  1C3N A;  2NUO A;  2JZ4 A;  5BN6 E;  3VY6 A;  3R51 A;  3R52 A;  3LL1 A;  4DDN A;  1M26 A;  1JOT A;  2HYR A;  3APA A;  5J4X A;  2GUE A;  1ZGR A;  1ZGS A;  3R50 A;  1UGY C;  2GUC A;  5J51 A;  4GX7 A;  3LLZ A;  4R6Q A;  1XEZ A;  2BMY A;  5J4T A;  3MIU A;  3LLY A;  1UGW C;  1KUJ A;  4R6N A;  1UH0 A;  1XXR A;  5JM1 A;  1J4T A;  1JAC A;  2BN0 A;  3WOC A;  1WS5 A;  2GUD A;  1WS4 A;  3P8S A;  4PIU A;  3LL0 A;  1X1V A;  3AQG A;  4AKB A;  3LM1 A;  4PIF A;  2GTY A;  4R6P A;  4AK4 A;  1XXQ A;  4MQ0 A;  1PXD A;  3LKY A;  3LL2 A;  3VZG A;  4WOG A;  2GUX A;  1UGX A;  2BMZ A;  3O44 A;  1VBO A;  4R6R A;  2NU5 A;  3WOB A;  3MIV A;  5J50 A;  3MIT A;  4R6O A;  1J4S A;  1TP8 A;  1UH1 A;  1C3M A;  4PIK A;  1C3K A;  3VY7 A;  2HYQ A;  5AV7 A;  1WS5 C;  1J4U A;  1UGY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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