1UGWA

Crystal structure of jacalin- gal complex
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence G
ec nomenclature
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ugwA00
3P8SA 1WS5C 1UGWA 3VZGA 1UGYA 4MQ0A 5J4TA 2GTYA 2GUXA 2BMYA 4R6QA 3LL0A 1TOQA 1C3MA 4R6OA 2NUOA 2HYRA 3WOCA 4AKBA 2BMZA 1VBOA 4WOGA 3AQGA 5J50A 3APAA 3O44A 3MIVA 2BN0A 4DDNA 4PIUA 2JZ4A 1XXQA 1UH0A 4PIFA 1X1VA 3LL1A 2HYQA 4GX7A 2GUEA 3R52A 1WS4C 3MIUA 1J4UA 5AV7A 2NU5A 1J4TA 1JOTA 5EXGA 4PIKA 3LM1A 5J51A 4AKCA 1WS4A 3LLZA 3VY7A 1OUWA 1JACA 3VZFA 1TP8A 4AKDA 5JM1A 1M26A 1C3NA 5BN6E 4AK4A 1VBPA 3LLYA 1PXDA 3LKYA 1ZGSA 2GUCA 1XXRA 1KU8A 4R6PA 4PITA 2GUDA 3R50A 1C3KA 1ZGRA 1WS5A 3VZEA 1XEZA 3LL2A 1KUJA 1UGXA 3R51A 3MITA 4R6RA 1J4SA 3WOBA 3VY6A 5J4XA 1UH1A 1UGWC 4R6NA 1UGYC
chains in the Genus database with same CATH superfamily
3P8SA 1WS5C 1UGWA 3VZGA 1UGYA 4MQ0A 5J4TA 1VMOA 2GTYA 2GUXA 4QX2A 1JI6A 2BMYA 4R6QA 3LL0A 4QX0A 1TOQA 1C3MA 4R6OA 2NUOA 2HYRA 3WOCA 4AKBA 2BMZA 1VBOA 4WOGA 3AQGA 5J50A 3APAA 3O44A 3MIVA 2BN0A 2QP2A 3EB7A 2C9KA 4DDNA 4PIUA 2JZ4A 1XXQA 1UH0A 4PIFA 1X1VA 3LL1A 2HYQA 4GX7A 2GUEA 3R52A 4ARXA 1WS4C 3MIUA 1W99A 1J4UA 5AV7A 2NU5A 1J4TA 1JOTA 5EXGA 4PIKA 3LM1A 5J51A 4AKCA 1WS4A 3LLZA 4QX3A 3VY7A 1OUWA 1JACA 3VZFA 1TP8A 4D8MA 4AKDA 4QX1A 5JM1A 1I5PA 1M26A 1C3NA 1DLCA 5BN6E 4AK4A 1VBPA 3LLYA 1PXDA 4ARYA 3LKYA 1ZGSA 2GUCA 1XXRA 1KU8A 4R6PA 4PITA 2GUDA 3R50A 1C3KA 1ZGRA 3TOWA 1WS5A 3VZEA 1XEZA 3LL2A 1KUJA 1UGXA 3R51A 3MITA 4W8JA 4R6RA 1J4SA 4MOAA 3WOBA 3VY6A 5J4XA 1CIYA 1UH1A 1UGWC 4R6NA 1UGYC
chains in the Genus database with same CATH topology
3P8SA 1WS5C 1UGWA 3VZGA 1UGYA 4MQ0A 5J4TA 2GTYA 2GUXA 2BMYA 4R6QA 3LL0A 1TOQA 1C3MA 4R6OA 2NUOA 2HYRA 3WOCA 4AKBA 2BMZA 1VBOA 4WOGA 3AQGA 5J50A 3APAA 3O44A 3MIVA 2BN0A 4DDNA 4PIUA 2JZ4A 1XXQA 1UH0A 4PIFA 1X1VA 3LL1A 2HYQA 4GX7A 2GUEA 3R52A 1WS4C 3MIUA 1J4UA 5AV7A 2NU5A 1J4TA 1JOTA 5EXGA 4PIKA 3LM1A 5J51A 4AKCA 1WS4A 3LLZA 3VY7A 1OUWA 1JACA 3VZFA 1TP8A 4AKDA 5JM1A 1M26A 1C3NA 5BN6E 4AK4A 1VBPA 3LLYA 1PXDA 3LKYA 1ZGSA 2GUCA 1XXRA 1KU8A 4R6PA 4PITA 2GUDA 3R50A 1C3KA 1ZGRA 1WS5A 3VZEA 1XEZA 3LL2A 1KUJA 1UGXA 3R51A 3MITA 4R6RA 1J4SA 3WOBA 3VY6A 5J4XA 1UH1A 1UGWC 4R6NA 1UGYC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P8S A;  1WS5 C;  1UGW A;  3VZG A;  1UGY A;  4MQ0 A;  5J4T A;  2GTY A;  2GUX A;  2BMY A;  4R6Q A;  3LL0 A;  1TOQ A;  1C3M A;  4R6O A;  2NUO A;  2HYR A;  3WOC A;  4AKB A;  2BMZ A;  1VBO A;  4WOG A;  3AQG A;  5J50 A;  3APA A;  3O44 A;  3MIV A;  2BN0 A;  4DDN A;  4PIU A;  2JZ4 A;  1XXQ A;  1UH0 A;  4PIF A;  1X1V A;  3LL1 A;  2HYQ A;  4GX7 A;  2GUE A;  3R52 A;  1WS4 C;  3MIU A;  1J4U A;  5AV7 A;  2NU5 A;  1J4T A;  1JOT A;  5EXG A;  4PIK A;  3LM1 A;  5J51 A;  4AKC A;  1WS4 A;  3LLZ A;  3VY7 A;  1OUW A;  1JAC A;  3VZF A;  1TP8 A;  4AKD A;  5JM1 A;  1M26 A;  1C3N A;  5BN6 E;  4AK4 A;  1VBP A;  3LLY A;  1PXD A;  3LKY A;  1ZGS A;  2GUC A;  1XXR A;  1KU8 A;  4R6P A;  4PIT A;  2GUD A;  3R50 A;  1C3K A;  1ZGR A;  1WS5 A;  3VZE A;  1XEZ A;  3LL2 A;  1KUJ A;  1UGX A;  3R51 A;  3MIT A;  4R6R A;  1J4S A;  3WOB A;  3VY6 A;  5J4X A;  1UH1 A;  1UGW C;  4R6N A;  1UGY C; 
#chains in the Genus database with same CATH topology
 3P8S A;  1WS5 C;  1UGW A;  3VZG A;  1UGY A;  4MQ0 A;  5J4T A;  1VMO A;  2GTY A;  2GUX A;  4QX2 A;  1JI6 A;  2BMY A;  4R6Q A;  3LL0 A;  4QX0 A;  1TOQ A;  1C3M A;  4R6O A;  2NUO A;  2HYR A;  3WOC A;  4AKB A;  2BMZ A;  1VBO A;  4WOG A;  3AQG A;  5J50 A;  3APA A;  3O44 A;  3MIV A;  2BN0 A;  2QP2 A;  3EB7 A;  2C9K A;  4DDN A;  4PIU A;  2JZ4 A;  1XXQ A;  1UH0 A;  4PIF A;  1X1V A;  3LL1 A;  2HYQ A;  4GX7 A;  2GUE A;  3R52 A;  4ARX A;  1WS4 C;  3MIU A;  1W99 A;  1J4U A;  5AV7 A;  2NU5 A;  1J4T A;  1JOT A;  5EXG A;  4PIK A;  3LM1 A;  5J51 A;  4AKC A;  1WS4 A;  3LLZ A;  4QX3 A;  3VY7 A;  1OUW A;  1JAC A;  3VZF A;  1TP8 A;  4D8M A;  4AKD A;  4QX1 A;  5JM1 A;  1I5P A;  1M26 A;  1C3N A;  1DLC A;  5BN6 E;  4AK4 A;  1VBP A;  3LLY A;  1PXD A;  4ARY A;  3LKY A;  1ZGS A;  2GUC A;  1XXR A;  1KU8 A;  4R6P A;  4PIT A;  2GUD A;  3R50 A;  1C3K A;  1ZGR A;  3TOW A;  1WS5 A;  3VZE A;  1XEZ A;  3LL2 A;  1KUJ A;  1UGX A;  3R51 A;  3MIT A;  4W8J A;  4R6R A;  1J4S A;  4MOA A;  3WOB A;  3VY6 A;  5J4X A;  1CIY A;  1UH1 A;  1UGW C;  4R6N A;  1UGY C; 
#chains in the Genus database with same CATH homology
 3P8S A;  1WS5 C;  1UGW A;  3VZG A;  1UGY A;  4MQ0 A;  5J4T A;  2GTY A;  2GUX A;  2BMY A;  4R6Q A;  3LL0 A;  1TOQ A;  1C3M A;  4R6O A;  2NUO A;  2HYR A;  3WOC A;  4AKB A;  2BMZ A;  1VBO A;  4WOG A;  3AQG A;  5J50 A;  3APA A;  3O44 A;  3MIV A;  2BN0 A;  4DDN A;  4PIU A;  2JZ4 A;  1XXQ A;  1UH0 A;  4PIF A;  1X1V A;  3LL1 A;  2HYQ A;  4GX7 A;  2GUE A;  3R52 A;  1WS4 C;  3MIU A;  1J4U A;  5AV7 A;  2NU5 A;  1J4T A;  1JOT A;  5EXG A;  4PIK A;  3LM1 A;  5J51 A;  4AKC A;  1WS4 A;  3LLZ A;  3VY7 A;  1OUW A;  1JAC A;  3VZF A;  1TP8 A;  4AKD A;  5JM1 A;  1M26 A;  1C3N A;  5BN6 E;  4AK4 A;  1VBP A;  3LLY A;  1PXD A;  3LKY A;  1ZGS A;  2GUC A;  1XXR A;  1KU8 A;  4R6P A;  4PIT A;  2GUD A;  3R50 A;  1C3K A;  1ZGR A;  1WS5 A;  3VZE A;  1XEZ A;  3LL2 A;  1KUJ A;  1UGX A;  3R51 A;  3MIT A;  4R6R A;  1J4S A;  3WOB A;  3VY6 A;  5J4X A;  1UH1 A;  1UGW C;  4R6N A;  1UGY C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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