1UGXA

Crystal structure of jacalin- me-alpha-t-antigen (gal-beta(1-3)-galnac-alpha-o-me) complex
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 28
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2003-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ugxA00
2GUDA 4R6NA 1TOQA 3VZEA 3AQGA 1ZGRA 1XXQA 4WOGA 3LL1A 1UH0A 3R52A 4R6PA 2GTYA 2GUCA 4R6RA 5AV7A 2GUXA 4GX7A 3WOCA 1WS4A 3VZFA 1C3MA 3WOBA 3MIUA 1VBOA 3LKYA 3VY6A 5J4TA 3R51A 1J4TA 3MIVA 1WS4C 1UGXA 1TP8A 5EXGA 2HYQA 2NU5A 5BN6E 3LL0A 4DDNA 1UGYA 4PIFA 2HYRA 4R6QA 1XXRA 3LM1A 1UGWA 3VY7A 3LLZA 5J50A 4PIKA 1J4UA 3LLYA 1UGYC 2BMZA 1XEZA 1C3NA 2BMYA 5JM1A 4MQ0A 3APAA 3LL2A 1UGWC 1PXDA 2NUOA 4R6OA 1X1VA 1J4SA 3P8SA 4AKCA 4AKDA 3MITA 1UH1A 4AK4A 1KU8A 1OUWA 3R50A 1VBPA 4AKBA 1JOTA 2GUEA 1JACA 1WS5A 4PIUA 5J4XA 2JZ4A 2BN0A 1M26A 1KUJA 3VZGA 1C3KA 1ZGSA 4PITA 5J51A 1WS5C 3O44A
chains in the Genus database with same CATH superfamily
2GUDA 4W8JA 4R6NA 1TOQA 3VZEA 1VMOA 3AQGA 1ZGRA 1XXQA 4WOGA 3LL1A 1UH0A 3R52A 4R6PA 1I5PA 2GTYA 1CIYA 2GUCA 4R6RA 5AV7A 2GUXA 4GX7A 3WOCA 1WS4A 3VZFA 1C3MA 3WOBA 3MIUA 1VBOA 3LKYA 4ARXA 3VY6A 5J4TA 3R51A 1J4TA 3MIVA 1WS4C 1UGXA 1TP8A 5EXGA 2HYQA 2NU5A 2C9KA 5BN6E 3LL0A 4DDNA 1UGYA 4PIFA 2HYRA 4R6QA 4QX2A 4MOAA 1XXRA 3LM1A 1UGWA 3VY7A 2QP2A 3LLZA 5J50A 4PIKA 1J4UA 3LLYA 1W99A 4D8MA 1UGYC 4QX3A 2BMZA 1XEZA 1C3NA 2BMYA 5JM1A 4MQ0A 1DLCA 3APAA 3LL2A 1UGWC 4ARYA 1PXDA 2NUOA 4QX0A 4R6OA 1X1VA 1J4SA 3P8SA 4AKCA 4AKDA 3TOWA 3MITA 1UH1A 4AK4A 1KU8A 1OUWA 3R50A 1JI6A 1VBPA 4AKBA 1JOTA 2GUEA 1JACA 1WS5A 4QX1A 4PIUA 5J4XA 3EB7A 2JZ4A 2BN0A 1M26A 1KUJA 3VZGA 1C3KA 1ZGSA 4PITA 5J51A 1WS5C 3O44A
chains in the Genus database with same CATH topology
2GUDA 4R6NA 1TOQA 3VZEA 3AQGA 1ZGRA 1XXQA 4WOGA 3LL1A 1UH0A 3R52A 4R6PA 2GTYA 2GUCA 4R6RA 5AV7A 2GUXA 4GX7A 3WOCA 1WS4A 3VZFA 1C3MA 3WOBA 3MIUA 1VBOA 3LKYA 3VY6A 5J4TA 3R51A 1J4TA 3MIVA 1WS4C 1UGXA 1TP8A 5EXGA 2HYQA 2NU5A 5BN6E 3LL0A 4DDNA 1UGYA 4PIFA 2HYRA 4R6QA 1XXRA 3LM1A 1UGWA 3VY7A 3LLZA 5J50A 4PIKA 1J4UA 3LLYA 1UGYC 2BMZA 1XEZA 1C3NA 2BMYA 5JM1A 4MQ0A 3APAA 3LL2A 1UGWC 1PXDA 2NUOA 4R6OA 1X1VA 1J4SA 3P8SA 4AKCA 4AKDA 3MITA 1UH1A 4AK4A 1KU8A 1OUWA 3R50A 1VBPA 4AKBA 1JOTA 2GUEA 1JACA 1WS5A 4PIUA 5J4XA 2JZ4A 2BN0A 1M26A 1KUJA 3VZGA 1C3KA 1ZGSA 4PITA 5J51A 1WS5C 3O44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GUD A;  4R6N A;  1TOQ A;  3VZE A;  3AQG A;  1ZGR A;  1XXQ A;  4WOG A;  3LL1 A;  1UH0 A;  3R52 A;  4R6P A;  2GTY A;  2GUC A;  4R6R A;  5AV7 A;  2GUX A;  4GX7 A;  3WOC A;  1WS4 A;  3VZF A;  1C3M A;  3WOB A;  3MIU A;  1VBO A;  3LKY A;  3VY6 A;  5J4T A;  3R51 A;  1J4T A;  3MIV A;  1WS4 C;  1UGX A;  1TP8 A;  5EXG A;  2HYQ A;  2NU5 A;  5BN6 E;  3LL0 A;  4DDN A;  1UGY A;  4PIF A;  2HYR A;  4R6Q A;  1XXR A;  3LM1 A;  1UGW A;  3VY7 A;  3LLZ A;  5J50 A;  4PIK A;  1J4U A;  3LLY A;  1UGY C;  2BMZ A;  1XEZ A;  1C3N A;  2BMY A;  5JM1 A;  4MQ0 A;  3APA A;  3LL2 A;  1UGW C;  1PXD A;  2NUO A;  4R6O A;  1X1V A;  1J4S A;  3P8S A;  4AKC A;  4AKD A;  3MIT A;  1UH1 A;  4AK4 A;  1KU8 A;  1OUW A;  3R50 A;  1VBP A;  4AKB A;  1JOT A;  2GUE A;  1JAC A;  1WS5 A;  4PIU A;  5J4X A;  2JZ4 A;  2BN0 A;  1M26 A;  1KUJ A;  3VZG A;  1C3K A;  1ZGS A;  4PIT A;  5J51 A;  1WS5 C;  3O44 A; 
#chains in the Genus database with same CATH topology
 2GUD A;  4W8J A;  4R6N A;  1TOQ A;  3VZE A;  1VMO A;  3AQG A;  1ZGR A;  1XXQ A;  4WOG A;  3LL1 A;  1UH0 A;  3R52 A;  4R6P A;  1I5P A;  2GTY A;  1CIY A;  2GUC A;  4R6R A;  5AV7 A;  2GUX A;  4GX7 A;  3WOC A;  1WS4 A;  3VZF A;  1C3M A;  3WOB A;  3MIU A;  1VBO A;  3LKY A;  4ARX A;  3VY6 A;  5J4T A;  3R51 A;  1J4T A;  3MIV A;  1WS4 C;  1UGX A;  1TP8 A;  5EXG A;  2HYQ A;  2NU5 A;  2C9K A;  5BN6 E;  3LL0 A;  4DDN A;  1UGY A;  4PIF A;  2HYR A;  4R6Q A;  4QX2 A;  4MOA A;  1XXR A;  3LM1 A;  1UGW A;  3VY7 A;  2QP2 A;  3LLZ A;  5J50 A;  4PIK A;  1J4U A;  3LLY A;  1W99 A;  4D8M A;  1UGY C;  4QX3 A;  2BMZ A;  1XEZ A;  1C3N A;  2BMY A;  5JM1 A;  4MQ0 A;  1DLC A;  3APA A;  3LL2 A;  1UGW C;  4ARY A;  1PXD A;  2NUO A;  4QX0 A;  4R6O A;  1X1V A;  1J4S A;  3P8S A;  4AKC A;  4AKD A;  3TOW A;  3MIT A;  1UH1 A;  4AK4 A;  1KU8 A;  1OUW A;  3R50 A;  1JI6 A;  1VBP A;  4AKB A;  1JOT A;  2GUE A;  1JAC A;  1WS5 A;  4QX1 A;  4PIU A;  5J4X A;  3EB7 A;  2JZ4 A;  2BN0 A;  1M26 A;  1KUJ A;  3VZG A;  1C3K A;  1ZGS A;  4PIT A;  5J51 A;  1WS5 C;  3O44 A; 
#chains in the Genus database with same CATH homology
 2GUD A;  4R6N A;  1TOQ A;  3VZE A;  3AQG A;  1ZGR A;  1XXQ A;  4WOG A;  3LL1 A;  1UH0 A;  3R52 A;  4R6P A;  2GTY A;  2GUC A;  4R6R A;  5AV7 A;  2GUX A;  4GX7 A;  3WOC A;  1WS4 A;  3VZF A;  1C3M A;  3WOB A;  3MIU A;  1VBO A;  3LKY A;  3VY6 A;  5J4T A;  3R51 A;  1J4T A;  3MIV A;  1WS4 C;  1UGX A;  1TP8 A;  5EXG A;  2HYQ A;  2NU5 A;  5BN6 E;  3LL0 A;  4DDN A;  1UGY A;  4PIF A;  2HYR A;  4R6Q A;  1XXR A;  3LM1 A;  1UGW A;  3VY7 A;  3LLZ A;  5J50 A;  4PIK A;  1J4U A;  3LLY A;  1UGY C;  2BMZ A;  1XEZ A;  1C3N A;  2BMY A;  5JM1 A;  4MQ0 A;  3APA A;  3LL2 A;  1UGW C;  1PXD A;  2NUO A;  4R6O A;  1X1V A;  1J4S A;  3P8S A;  4AKC A;  4AKD A;  3MIT A;  1UH1 A;  4AK4 A;  1KU8 A;  1OUW A;  3R50 A;  1VBP A;  4AKB A;  1JOT A;  2GUE A;  1JAC A;  1WS5 A;  4PIU A;  5J4X A;  2JZ4 A;  2BN0 A;  1M26 A;  1KUJ A;  3VZG A;  1C3K A;  1ZGS A;  4PIT A;  5J51 A;  1WS5 C;  3O44 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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