1UGYC

Crystal structure of jacalin- mellibiose (gal-alpha(1-6)-glc) complex
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 31
structure length 133
sequence length 133
chains with identical sequence E
ec nomenclature
pdb deposition date 2003-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ugyC00
1KUJA 1XXQA 1WS4C 4AKCA 4PIKA 5J51A 1X1VA 1J4TA 1KU8A 2BMZA 3WOCA 1UGWA 1WS5C 4PIUA 4AK4A 2GUXA 3VZFA 3LLZA 3LM1A 4MQ0A 3AQGA 3MIUA 1M26A 1UGYC 3LL1A 2GUCA 1TOQA 5BN6E 4GX7A 1UH0A 2NU5A 3P8SA 5AV7A 3R51A 3WOBA 3O44A 5J4XA 1VBOA 2GUEA 3LKYA 1XXRA 2HYRA 1WS4A 3LLYA 4PITA 1ZGSA 4R6OA 1WS5A 4PIFA 2BMYA 5JM1A 1UGYA 1TP8A 3R50A 1C3NA 2GTYA 4R6RA 1UGWC 1JACA 4R6NA 1C3KA 1J4UA 4AKDA 3LL0A 3MIVA 1VBPA 3LL2A 1ZGRA 5EXGA 3VZGA 3VZEA 4WOGA 3VY7A 5J50A 4AKBA 3MITA 2JZ4A 3APAA 1J4SA 1JOTA 2HYQA 1XEZA 4R6PA 4R6QA 4DDNA 3VY6A 2BN0A 1UGXA 2NUOA 1PXDA 1OUWA 3R52A 2GUDA 1C3MA 5J4TA 1UH1A
chains in the Genus database with same CATH superfamily
1KUJA 1XXQA 1WS4C 2C9KA 4AKCA 4PIKA 5J51A 1X1VA 1J4TA 1KU8A 2BMZA 3WOCA 1UGWA 1I5PA 1VMOA 1WS5C 4PIUA 4AK4A 2GUXA 3VZFA 3LLZA 3LM1A 4MQ0A 3AQGA 3MIUA 1M26A 1UGYC 4QX0A 1CIYA 4QX2A 3LL1A 4D8MA 2GUCA 1TOQA 5BN6E 4GX7A 1UH0A 2NU5A 3P8SA 5AV7A 3R51A 3WOBA 3O44A 5J4XA 4ARXA 1VBOA 2GUEA 3LKYA 1XXRA 2HYRA 1WS4A 3LLYA 4PITA 4QX3A 1ZGSA 4R6OA 1WS5A 3TOWA 4PIFA 1DLCA 2BMYA 5JM1A 1UGYA 1TP8A 3R50A 1C3NA 4QX1A 2GTYA 4R6RA 1JACA 1UGWC 4R6NA 1C3KA 1J4UA 4AKDA 4ARYA 3LL0A 3MIVA 1VBPA 4W8JA 3LL2A 1ZGRA 5EXGA 3VZGA 3VZEA 4WOGA 3VY7A 5J50A 4AKBA 3MITA 2JZ4A 4MOAA 1JI6A 3APAA 1J4SA 3EB7A 1JOTA 1W99A 2HYQA 2QP2A 1XEZA 4R6PA 4R6QA 4DDNA 3VY6A 2BN0A 1UGXA 2NUOA 1PXDA 1OUWA 3R52A 2GUDA 1C3MA 5J4TA 1UH1A
chains in the Genus database with same CATH topology
1KUJA 1XXQA 1WS4C 4AKCA 4PIKA 5J51A 1X1VA 1J4TA 1KU8A 2BMZA 3WOCA 1UGWA 1WS5C 4PIUA 4AK4A 2GUXA 3VZFA 3LLZA 3LM1A 4MQ0A 3AQGA 3MIUA 1M26A 1UGYC 3LL1A 2GUCA 1TOQA 5BN6E 4GX7A 1UH0A 2NU5A 3P8SA 5AV7A 3R51A 3WOBA 3O44A 5J4XA 1VBOA 2GUEA 3LKYA 1XXRA 2HYRA 1WS4A 3LLYA 4PITA 1ZGSA 4R6OA 1WS5A 4PIFA 2BMYA 5JM1A 1UGYA 1TP8A 3R50A 1C3NA 2GTYA 4R6RA 1UGWC 1JACA 4R6NA 1C3KA 1J4UA 4AKDA 3LL0A 3MIVA 1VBPA 3LL2A 1ZGRA 5EXGA 3VZGA 3VZEA 4WOGA 3VY7A 5J50A 4AKBA 3MITA 2JZ4A 3APAA 1J4SA 1JOTA 2HYQA 1XEZA 4R6PA 4R6QA 4DDNA 3VY6A 2BN0A 1UGXA 2NUOA 1PXDA 1OUWA 3R52A 2GUDA 1C3MA 5J4TA 1UH1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KUJ A;  1XXQ A;  1WS4 C;  4AKC A;  4PIK A;  5J51 A;  1X1V A;  1J4T A;  1KU8 A;  2BMZ A;  3WOC A;  1UGW A;  1WS5 C;  4PIU A;  4AK4 A;  2GUX A;  3VZF A;  3LLZ A;  3LM1 A;  4MQ0 A;  3AQG A;  3MIU A;  1M26 A;  1UGY C;  3LL1 A;  2GUC A;  1TOQ A;  5BN6 E;  4GX7 A;  1UH0 A;  2NU5 A;  3P8S A;  5AV7 A;  3R51 A;  3WOB A;  3O44 A;  5J4X A;  1VBO A;  2GUE A;  3LKY A;  1XXR A;  2HYR A;  1WS4 A;  3LLY A;  4PIT A;  1ZGS A;  4R6O A;  1WS5 A;  4PIF A;  2BMY A;  5JM1 A;  1UGY A;  1TP8 A;  3R50 A;  1C3N A;  2GTY A;  4R6R A;  1UGW C;  1JAC A;  4R6N A;  1C3K A;  1J4U A;  4AKD A;  3LL0 A;  3MIV A;  1VBP A;  3LL2 A;  1ZGR A;  5EXG A;  3VZG A;  3VZE A;  4WOG A;  3VY7 A;  5J50 A;  4AKB A;  3MIT A;  2JZ4 A;  3APA A;  1J4S A;  1JOT A;  2HYQ A;  1XEZ A;  4R6P A;  4R6Q A;  4DDN A;  3VY6 A;  2BN0 A;  1UGX A;  2NUO A;  1PXD A;  1OUW A;  3R52 A;  2GUD A;  1C3M A;  5J4T A;  1UH1 A; 
#chains in the Genus database with same CATH topology
 1KUJ A;  1XXQ A;  1WS4 C;  2C9K A;  4AKC A;  4PIK A;  5J51 A;  1X1V A;  1J4T A;  1KU8 A;  2BMZ A;  3WOC A;  1UGW A;  1I5P A;  1VMO A;  1WS5 C;  4PIU A;  4AK4 A;  2GUX A;  3VZF A;  3LLZ A;  3LM1 A;  4MQ0 A;  3AQG A;  3MIU A;  1M26 A;  1UGY C;  4QX0 A;  1CIY A;  4QX2 A;  3LL1 A;  4D8M A;  2GUC A;  1TOQ A;  5BN6 E;  4GX7 A;  1UH0 A;  2NU5 A;  3P8S A;  5AV7 A;  3R51 A;  3WOB A;  3O44 A;  5J4X A;  4ARX A;  1VBO A;  2GUE A;  3LKY A;  1XXR A;  2HYR A;  1WS4 A;  3LLY A;  4PIT A;  4QX3 A;  1ZGS A;  4R6O A;  1WS5 A;  3TOW A;  4PIF A;  1DLC A;  2BMY A;  5JM1 A;  1UGY A;  1TP8 A;  3R50 A;  1C3N A;  4QX1 A;  2GTY A;  4R6R A;  1JAC A;  1UGW C;  4R6N A;  1C3K A;  1J4U A;  4AKD A;  4ARY A;  3LL0 A;  3MIV A;  1VBP A;  4W8J A;  3LL2 A;  1ZGR A;  5EXG A;  3VZG A;  3VZE A;  4WOG A;  3VY7 A;  5J50 A;  4AKB A;  3MIT A;  2JZ4 A;  4MOA A;  1JI6 A;  3APA A;  1J4S A;  3EB7 A;  1JOT A;  1W99 A;  2HYQ A;  2QP2 A;  1XEZ A;  4R6P A;  4R6Q A;  4DDN A;  3VY6 A;  2BN0 A;  1UGX A;  2NUO A;  1PXD A;  1OUW A;  3R52 A;  2GUD A;  1C3M A;  5J4T A;  1UH1 A; 
#chains in the Genus database with same CATH homology
 1KUJ A;  1XXQ A;  1WS4 C;  4AKC A;  4PIK A;  5J51 A;  1X1V A;  1J4T A;  1KU8 A;  2BMZ A;  3WOC A;  1UGW A;  1WS5 C;  4PIU A;  4AK4 A;  2GUX A;  3VZF A;  3LLZ A;  3LM1 A;  4MQ0 A;  3AQG A;  3MIU A;  1M26 A;  1UGY C;  3LL1 A;  2GUC A;  1TOQ A;  5BN6 E;  4GX7 A;  1UH0 A;  2NU5 A;  3P8S A;  5AV7 A;  3R51 A;  3WOB A;  3O44 A;  5J4X A;  1VBO A;  2GUE A;  3LKY A;  1XXR A;  2HYR A;  1WS4 A;  3LLY A;  4PIT A;  1ZGS A;  4R6O A;  1WS5 A;  4PIF A;  2BMY A;  5JM1 A;  1UGY A;  1TP8 A;  3R50 A;  1C3N A;  2GTY A;  4R6R A;  1UGW C;  1JAC A;  4R6N A;  1C3K A;  1J4U A;  4AKD A;  3LL0 A;  3MIV A;  1VBP A;  3LL2 A;  1ZGR A;  5EXG A;  3VZG A;  3VZE A;  4WOG A;  3VY7 A;  5J50 A;  4AKB A;  3MIT A;  2JZ4 A;  3APA A;  1J4S A;  1JOT A;  2HYQ A;  1XEZ A;  4R6P A;  4R6Q A;  4DDN A;  3VY6 A;  2BN0 A;  1UGX A;  2NUO A;  1PXD A;  1OUW A;  3R52 A;  2GUD A;  1C3M A;  5J4T A;  1UH1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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