1UH0A

Crystal structure of jacalin- me-alpha-galnac complex
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 28
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2003-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1uh0A00
1PXDA 3O44A 1JOTA 3WOBA 1WS4C 4MQ0A 1J4SA 2GUCA 2HYRA 1C3NA 2GUXA 1M26A 2NUOA 5EXGA 3VY7A 3LL1A 5J50A 3R52A 4AKCA 5J4TA 3LM1A 1J4UA 4AK4A 1TOQA 3R51A 1C3KA 1XXQA 4R6QA 2NU5A 3LLZA 4PIFA 3LL2A 1OUWA 3R50A 4DDNA 4AKBA 1UH1A 2GUEA 3WOCA 1ZGSA 3APAA 2BN0A 4AKDA 5J51A 3VZFA 1XEZA 4R6RA 1UGWA 3LL0A 4R6NA 5JM1A 1KU8A 3AQGA 2BMYA 1WS5A 3VY6A 1UGXA 2JZ4A 1WS5C 4WOGA 1VBOA 2HYQA 3LLYA 1XXRA 1C3MA 2GUDA 1X1VA 1UGYA 1VBPA 1UGYC 1UGWC 5AV7A 3VZEA 1J4TA 1WS4A 3P8SA 1TP8A 3VZGA 5BN6E 2BMZA 3MIUA 1JACA 3LKYA 2GTYA 4GX7A 4R6PA 3MIVA 1UH0A 3MITA 4R6OA 5J4XA 1KUJA 4PITA 1ZGRA 4PIUA 4PIKA
chains in the Genus database with same CATH superfamily
1PXDA 3O44A 1JOTA 3WOBA 1WS4C 3TOWA 4MQ0A 1J4SA 2GUCA 2HYRA 4D8MA 4QX3A 1C3NA 2GUXA 1M26A 2NUOA 5EXGA 3VY7A 3LL1A 5J50A 3R52A 4AKCA 5J4TA 3LM1A 1J4UA 4AK4A 3R51A 1TOQA 1C3KA 1XXQA 4R6QA 2NU5A 3LLZA 4PIFA 3LL2A 1OUWA 3R50A 4DDNA 4MOAA 4AKBA 1UH1A 2GUEA 3WOCA 1ZGSA 3APAA 2BN0A 4AKDA 5J51A 3VZFA 1XEZA 4R6RA 4QX0A 1UGWA 3LL0A 2C9KA 4R6NA 5JM1A 1KU8A 3AQGA 1DLCA 4W8JA 2BMYA 1WS5A 3VY6A 1UGXA 2JZ4A 1WS5C 4WOGA 1JI6A 1VBOA 2HYQA 3LLYA 1I5PA 1XXRA 2QP2A 1VMOA 4ARXA 1C3MA 2GUDA 1X1VA 1UGYA 1VBPA 1UGYC 1UGWC 5AV7A 3VZEA 1J4TA 1WS4A 3P8SA 1TP8A 3VZGA 5BN6E 2BMZA 3MIUA 1JACA 3LKYA 4ARYA 2GTYA 4GX7A 1W99A 4R6PA 3MIVA 1CIYA 1UH0A 3MITA 4R6OA 4QX2A 5J4XA 4QX1A 3EB7A 1KUJA 4PITA 1ZGRA 4PIUA 4PIKA
chains in the Genus database with same CATH topology
1PXDA 3O44A 1JOTA 3WOBA 1WS4C 4MQ0A 1J4SA 2GUCA 2HYRA 1C3NA 2GUXA 1M26A 2NUOA 5EXGA 3VY7A 3LL1A 5J50A 3R52A 4AKCA 5J4TA 3LM1A 1J4UA 4AK4A 1TOQA 3R51A 1C3KA 1XXQA 4R6QA 2NU5A 3LLZA 4PIFA 3LL2A 1OUWA 3R50A 4DDNA 4AKBA 1UH1A 2GUEA 3WOCA 1ZGSA 3APAA 2BN0A 4AKDA 5J51A 3VZFA 1XEZA 4R6RA 1UGWA 3LL0A 4R6NA 5JM1A 1KU8A 3AQGA 2BMYA 1WS5A 3VY6A 1UGXA 2JZ4A 1WS5C 4WOGA 1VBOA 2HYQA 3LLYA 1XXRA 1C3MA 2GUDA 1X1VA 1UGYA 1VBPA 1UGYC 1UGWC 5AV7A 3VZEA 1J4TA 1WS4A 3P8SA 1TP8A 3VZGA 5BN6E 2BMZA 3MIUA 1JACA 3LKYA 2GTYA 4GX7A 4R6PA 3MIVA 1UH0A 3MITA 4R6OA 5J4XA 1KUJA 4PITA 1ZGRA 4PIUA 4PIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXD A;  3O44 A;  1JOT A;  3WOB A;  1WS4 C;  4MQ0 A;  1J4S A;  2GUC A;  2HYR A;  1C3N A;  2GUX A;  1M26 A;  2NUO A;  5EXG A;  3VY7 A;  3LL1 A;  5J50 A;  3R52 A;  4AKC A;  5J4T A;  3LM1 A;  1J4U A;  4AK4 A;  1TOQ A;  3R51 A;  1C3K A;  1XXQ A;  4R6Q A;  2NU5 A;  3LLZ A;  4PIF A;  3LL2 A;  1OUW A;  3R50 A;  4DDN A;  4AKB A;  1UH1 A;  2GUE A;  3WOC A;  1ZGS A;  3APA A;  2BN0 A;  4AKD A;  5J51 A;  3VZF A;  1XEZ A;  4R6R A;  1UGW A;  3LL0 A;  4R6N A;  5JM1 A;  1KU8 A;  3AQG A;  2BMY A;  1WS5 A;  3VY6 A;  1UGX A;  2JZ4 A;  1WS5 C;  4WOG A;  1VBO A;  2HYQ A;  3LLY A;  1XXR A;  1C3M A;  2GUD A;  1X1V A;  1UGY A;  1VBP A;  1UGY C;  1UGW C;  5AV7 A;  3VZE A;  1J4T A;  1WS4 A;  3P8S A;  1TP8 A;  3VZG A;  5BN6 E;  2BMZ A;  3MIU A;  1JAC A;  3LKY A;  2GTY A;  4GX7 A;  4R6P A;  3MIV A;  1UH0 A;  3MIT A;  4R6O A;  5J4X A;  1KUJ A;  4PIT A;  1ZGR A;  4PIU A;  4PIK A; 
#chains in the Genus database with same CATH topology
 1PXD A;  3O44 A;  1JOT A;  3WOB A;  1WS4 C;  3TOW A;  4MQ0 A;  1J4S A;  2GUC A;  2HYR A;  4D8M A;  4QX3 A;  1C3N A;  2GUX A;  1M26 A;  2NUO A;  5EXG A;  3VY7 A;  3LL1 A;  5J50 A;  3R52 A;  4AKC A;  5J4T A;  3LM1 A;  1J4U A;  4AK4 A;  3R51 A;  1TOQ A;  1C3K A;  1XXQ A;  4R6Q A;  2NU5 A;  3LLZ A;  4PIF A;  3LL2 A;  1OUW A;  3R50 A;  4DDN A;  4MOA A;  4AKB A;  1UH1 A;  2GUE A;  3WOC A;  1ZGS A;  3APA A;  2BN0 A;  4AKD A;  5J51 A;  3VZF A;  1XEZ A;  4R6R A;  4QX0 A;  1UGW A;  3LL0 A;  2C9K A;  4R6N A;  5JM1 A;  1KU8 A;  3AQG A;  1DLC A;  4W8J A;  2BMY A;  1WS5 A;  3VY6 A;  1UGX A;  2JZ4 A;  1WS5 C;  4WOG A;  1JI6 A;  1VBO A;  2HYQ A;  3LLY A;  1I5P A;  1XXR A;  2QP2 A;  1VMO A;  4ARX A;  1C3M A;  2GUD A;  1X1V A;  1UGY A;  1VBP A;  1UGY C;  1UGW C;  5AV7 A;  3VZE A;  1J4T A;  1WS4 A;  3P8S A;  1TP8 A;  3VZG A;  5BN6 E;  2BMZ A;  3MIU A;  1JAC A;  3LKY A;  4ARY A;  2GTY A;  4GX7 A;  1W99 A;  4R6P A;  3MIV A;  1CIY A;  1UH0 A;  3MIT A;  4R6O A;  4QX2 A;  5J4X A;  4QX1 A;  3EB7 A;  1KUJ A;  4PIT A;  1ZGR A;  4PIU A;  4PIK A; 
#chains in the Genus database with same CATH homology
 1PXD A;  3O44 A;  1JOT A;  3WOB A;  1WS4 C;  4MQ0 A;  1J4S A;  2GUC A;  2HYR A;  1C3N A;  2GUX A;  1M26 A;  2NUO A;  5EXG A;  3VY7 A;  3LL1 A;  5J50 A;  3R52 A;  4AKC A;  5J4T A;  3LM1 A;  1J4U A;  4AK4 A;  1TOQ A;  3R51 A;  1C3K A;  1XXQ A;  4R6Q A;  2NU5 A;  3LLZ A;  4PIF A;  3LL2 A;  1OUW A;  3R50 A;  4DDN A;  4AKB A;  1UH1 A;  2GUE A;  3WOC A;  1ZGS A;  3APA A;  2BN0 A;  4AKD A;  5J51 A;  3VZF A;  1XEZ A;  4R6R A;  1UGW A;  3LL0 A;  4R6N A;  5JM1 A;  1KU8 A;  3AQG A;  2BMY A;  1WS5 A;  3VY6 A;  1UGX A;  2JZ4 A;  1WS5 C;  4WOG A;  1VBO A;  2HYQ A;  3LLY A;  1XXR A;  1C3M A;  2GUD A;  1X1V A;  1UGY A;  1VBP A;  1UGY C;  1UGW C;  5AV7 A;  3VZE A;  1J4T A;  1WS4 A;  3P8S A;  1TP8 A;  3VZG A;  5BN6 E;  2BMZ A;  3MIU A;  1JAC A;  3LKY A;  2GTY A;  4GX7 A;  4R6P A;  3MIV A;  1UH0 A;  3MIT A;  4R6O A;  5J4X A;  1KUJ A;  4PIT A;  1ZGR A;  4PIU A;  4PIK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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