1UH1 | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structural Basis of the Carbohydrate Specificities of Jacalin: An X-ray and Modeling Study pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
total genus	30
structure length	133
sequence length	133
chains with identical sequence	C, E, G
ec nomenclature
pdb deposition date	2003-06-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1uh1A00

3WOBA 2BMYA 1M26A 1JACA 1J4TA 3P8SA 1WS4A 2GUEA 2BMZA 1UH0A 1J4UA 1UGYA 3APAA 1UGXA 1KU8A 1XXRA 3LM1A 1OUWA 1C3MA 4AKCA 5AV7A 4DDNA 3LL0A 3VY7A 3LLZA 5J50A 3WOCA 3O44A 1XXQA 5JM1A 4AK4A 3VZGA 2BN0A 1UH1A 1UGWC 1TOQA 1UGWA 1ZGRA 2NUOA 2GUDA 2NU5A 3AQGA 3R52A 4R6PA 2JZ4A 4AKDA 3LKYA 3R50A 1VBPA 5EXGA 2HYQA 1ZGSA 4R6OA 2HYRA 3LLYA 1C3KA 1KUJA 1J4SA 2GUCA 4PITA 4R6NA 3MIVA 3VY6A 3LL1A 4R6QA 3VZFA 4PIUA 1XEZA 3LL2A 5BN6E 1VBOA 1C3NA 4MQ0A 1WS4C 4AKBA 2GTYA 3MITA 4PIKA 1TP8A 1WS5C 1UGYC 3VZEA 2GUXA 4GX7A 5J4TA 5J51A 1WS5A 4WOGA 4R6RA 1JOTA 3R51A 5J4XA 3MIUA 1X1VA 4PIFA 1PXDA
chains in the Genus database with same CATH superfamily

3WOBA 4D8MA 2BMYA 1M26A 1JACA 1J4TA 3P8SA 1WS4A 4MOAA 4ARXA 1CIYA 2GUEA 2BMZA 1UH0A 1J4UA 1UGYA 3APAA 1KU8A 1UGXA 3TOWA 1XXRA 3LM1A 1OUWA 4W8JA 1C3MA 4AKCA 4QX0A 2C9KA 5AV7A 4DDNA 1W99A 3LL0A 1JI6A 1VMOA 3VY7A 3LLZA 5J50A 3WOCA 3O44A 1XXQA 5JM1A 4AK4A 3VZGA 2BN0A 1UH1A 1UGWC 2QP2A 1TOQA 1UGWA 1I5PA 1ZGRA 2NUOA 2GUDA 2NU5A 3AQGA 3R52A 4R6PA 2JZ4A 4AKDA 3LKYA 1DLCA 3EB7A 3R50A 1VBPA 5EXGA 2HYQA 1ZGSA 4R6OA 4QX3A 2HYRA 4QX2A 4ARYA 3LLYA 1C3KA 4QX1A 1KUJA 1J4SA 2GUCA 4PITA 4R6NA 3MIVA 3VY6A 3LL1A 4R6QA 3VZFA 4PIUA 1XEZA 3LL2A 5BN6E 1VBOA 1C3NA 4MQ0A 1WS4C 4AKBA 2GTYA 3MITA 4PIKA 1TP8A 1WS5C 1UGYC 3VZEA 2GUXA 4GX7A 5J4TA 5J51A 1WS5A 4WOGA 4R6RA 1JOTA 3R51A 5J4XA 3MIUA 1X1VA 4PIFA 1PXDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3WOB A;  2BMY A;  1M26 A;  1JAC A;  1J4T A;  3P8S A;  1WS4 A;  2GUE A;  2BMZ A;  1UH0 A;  1J4U A;  1UGY A;  3APA A;  1UGX A;  1KU8 A;  1XXR A;  3LM1 A;  1OUW A;  1C3M A;  4AKC A;  5AV7 A;  4DDN A;  3LL0 A;  3VY7 A;  3LLZ A;  5J50 A;  3WOC A;  3O44 A;  1XXQ A;  5JM1 A;  4AK4 A;  3VZG A;  2BN0 A;  1UH1 A;  1UGW C;  1TOQ A;  1UGW A;  1ZGR A;  2NUO A;  2GUD A;  2NU5 A;  3AQG A;  3R52 A;  4R6P A;  2JZ4 A;  4AKD A;  3LKY A;  3R50 A;  1VBP A;  5EXG A;  2HYQ A;  1ZGS A;  4R6O A;  2HYR A;  3LLY A;  1C3K A;  1KUJ A;  1J4S A;  2GUC A;  4PIT A;  4R6N A;  3MIV A;  3VY6 A;  3LL1 A;  4R6Q A;  3VZF A;  4PIU A;  1XEZ A;  3LL2 A;  5BN6 E;  1VBO A;  1C3N A;  4MQ0 A;  1WS4 C;  4AKB A;  2GTY A;  3MIT A;  4PIK A;  1TP8 A;  1WS5 C;  1UGY C;  3VZE A;  2GUX A;  4GX7 A;  5J4T A;  5J51 A;  1WS5 A;  4WOG A;  4R6R A;  1JOT A;  3R51 A;  5J4X A;  3MIU A;  1X1V A;  4PIF A;  1PXD A; 
#chains in the Genus database with same CATH topology
 3WOB A;  4D8M A;  2BMY A;  1M26 A;  1JAC A;  1J4T A;  3P8S A;  1WS4 A;  4MOA A;  4ARX A;  1CIY A;  2GUE A;  2BMZ A;  1UH0 A;  1J4U A;  1UGY A;  3APA A;  1KU8 A;  1UGX A;  3TOW A;  1XXR A;  3LM1 A;  1OUW A;  4W8J A;  1C3M A;  4AKC A;  4QX0 A;  2C9K A;  5AV7 A;  4DDN A;  1W99 A;  3LL0 A;  1JI6 A;  1VMO A;  3VY7 A;  3LLZ A;  5J50 A;  3WOC A;  3O44 A;  1XXQ A;  5JM1 A;  4AK4 A;  3VZG A;  2BN0 A;  1UH1 A;  1UGW C;  2QP2 A;  1TOQ A;  1UGW A;  1I5P A;  1ZGR A;  2NUO A;  2GUD A;  2NU5 A;  3AQG A;  3R52 A;  4R6P A;  2JZ4 A;  4AKD A;  3LKY A;  1DLC A;  3EB7 A;  3R50 A;  1VBP A;  5EXG A;  2HYQ A;  1ZGS A;  4R6O A;  4QX3 A;  2HYR A;  4QX2 A;  4ARY A;  3LLY A;  1C3K A;  4QX1 A;  1KUJ A;  1J4S A;  2GUC A;  4PIT A;  4R6N A;  3MIV A;  3VY6 A;  3LL1 A;  4R6Q A;  3VZF A;  4PIU A;  1XEZ A;  3LL2 A;  5BN6 E;  1VBO A;  1C3N A;  4MQ0 A;  1WS4 C;  4AKB A;  2GTY A;  3MIT A;  4PIK A;  1TP8 A;  1WS5 C;  1UGY C;  3VZE A;  2GUX A;  4GX7 A;  5J4T A;  5J51 A;  1WS5 A;  4WOG A;  4R6R A;  1JOT A;  3R51 A;  5J4X A;  3MIU A;  1X1V A;  4PIF A;  1PXD A; 
#chains in the Genus database with same CATH homology
 3WOB A;  2BMY A;  1M26 A;  1JAC A;  1J4T A;  3P8S A;  1WS4 A;  2GUE A;  2BMZ A;  1UH0 A;  1J4U A;  1UGY A;  3APA A;  1UGX A;  1KU8 A;  1XXR A;  3LM1 A;  1OUW A;  1C3M A;  4AKC A;  5AV7 A;  4DDN A;  3LL0 A;  3VY7 A;  3LLZ A;  5J50 A;  3WOC A;  3O44 A;  1XXQ A;  5JM1 A;  4AK4 A;  3VZG A;  2BN0 A;  1UH1 A;  1UGW C;  1TOQ A;  1UGW A;  1ZGR A;  2NUO A;  2GUD A;  2NU5 A;  3AQG A;  3R52 A;  4R6P A;  2JZ4 A;  4AKD A;  3LKY A;  3R50 A;  1VBP A;  5EXG A;  2HYQ A;  1ZGS A;  4R6O A;  2HYR A;  3LLY A;  1C3K A;  1KUJ A;  1J4S A;  2GUC A;  4PIT A;  4R6N A;  3MIV A;  3VY6 A;  3LL1 A;  4R6Q A;  3VZF A;  4PIU A;  1XEZ A;  3LL2 A;  5BN6 E;  1VBO A;  1C3N A;  4MQ0 A;  1WS4 C;  4AKB A;  2GTY A;  3MIT A;  4PIK A;  1TP8 A;  1WS5 C;  1UGY C;  3VZE A;  2GUX A;  4GX7 A;  5J4T A;  5J51 A;  1WS5 A;  4WOG A;  4R6R A;  1JOT A;  3R51 A;  5J4X A;  3MIU A;  1X1V A;  4PIF A;  1PXD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1UH1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations