1VBPA

Crystal structure of artocarpin-mannopentose complex
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
148
structure length
148
Chain Sequence
SQTITVGSWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the carbohydrate specificities of artocarpin: variation in the length of a loop as a strategy for generating ligand specificity
pubmed doi rcsb
molecule tags Plant protein
molecule keywords artocarpin
total genus 25
structure length 148
sequence length 148
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1vbpA00
1X1VA 3VY6A 1WS4A 1UH0A 5J51A 1C3NA 2GUEA 2BMYA 1VBPA 3LLZA 1C3KA 3MITA 4PITA 2JZ4A 5JM1A 1UGWA 3VZFA 1J4TA 2GUXA 1J4UA 1WS5C 3LKYA 4R6NA 1UGYA 1OUWA 3VZEA 1C3MA 1JACA 2HYRA 2BN0A 3P8SA 5AV7A 3WOBA 4AKBA 1JOTA 4AKDA 1M26A 4AKCA 3O44A 1XXRA 1ZGRA 2GUDA 1WS4C 3WOCA 1XXQA 4PIKA 4MQ0A 3LM1A 3LL1A 4AK4A 1UH1A 2GTYA 5EXGA 4DDNA 1VBOA 2NU5A 5J4TA 5BN6E 3LL0A 1KU8A 2GUCA 3VY7A 4GX7A 5J50A 4PIFA 1UGWC 1UGYC 3VZGA 1ZGSA 2NUOA 1XEZA 4R6RA 1J4SA 1WS5A 1KUJA 4R6QA 1UGXA 1PXDA 3R50A 4WOGA 1TP8A 3R52A 2BMZA 4R6OA 3AQGA 3LL2A 3MIVA 3LLYA 1TOQA 3R51A 4R6PA 5J4XA 2HYQA 3APAA 3MIUA 4PIUA
chains in the Genus database with same CATH superfamily
1X1VA 3VY6A 1WS4A 1UH0A 4MOAA 5J51A 4QX0A 1C3NA 2GUEA 2BMYA 1VBPA 3LLZA 1C3KA 1W99A 3MITA 3TOWA 4PITA 2JZ4A 5JM1A 1UGWA 3VZFA 1J4TA 2GUXA 1J4UA 1WS5C 3LKYA 4R6NA 1UGYA 1OUWA 3VZEA 1C3MA 4QX1A 1JACA 2HYRA 2BN0A 4QX2A 3P8SA 5AV7A 3WOBA 4ARXA 4AKBA 1JOTA 4AKDA 1M26A 4AKCA 3O44A 1XXRA 1ZGRA 2GUDA 1WS4C 3WOCA 1XXQA 4PIKA 4D8MA 4MQ0A 3LM1A 3LL1A 4AK4A 1I5PA 1UH1A 2GTYA 5EXGA 4DDNA 1VBOA 2QP2A 2NU5A 5J4TA 1JI6A 5BN6E 3LL0A 1KU8A 4QX3A 2GUCA 3VY7A 4GX7A 5J50A 4PIFA 1UGWC 1UGYC 3VZGA 1ZGSA 2NUOA 4ARYA 1VMOA 1XEZA 4R6RA 1J4SA 1WS5A 1KUJA 4R6QA 1UGXA 2C9KA 4W8JA 1PXDA 1CIYA 3R50A 4WOGA 1TP8A 3R52A 2BMZA 4R6OA 3AQGA 3LL2A 3MIVA 3LLYA 1TOQA 3R51A 4R6PA 1DLCA 5J4XA 3EB7A 2HYQA 3APAA 3MIUA 4PIUA
chains in the Genus database with same CATH topology
1X1VA 3VY6A 1WS4A 1UH0A 5J51A 1C3NA 2GUEA 2BMYA 1VBPA 3LLZA 1C3KA 3MITA 4PITA 2JZ4A 5JM1A 1UGWA 3VZFA 1J4TA 2GUXA 1J4UA 1WS5C 3LKYA 4R6NA 1UGYA 1OUWA 3VZEA 1C3MA 1JACA 2HYRA 2BN0A 3P8SA 5AV7A 3WOBA 4AKBA 1JOTA 4AKDA 1M26A 4AKCA 3O44A 1XXRA 1ZGRA 2GUDA 1WS4C 3WOCA 1XXQA 4PIKA 4MQ0A 3LM1A 3LL1A 4AK4A 1UH1A 2GTYA 5EXGA 4DDNA 1VBOA 2NU5A 5J4TA 5BN6E 3LL0A 1KU8A 2GUCA 3VY7A 4GX7A 5J50A 4PIFA 1UGWC 1UGYC 3VZGA 1ZGSA 2NUOA 1XEZA 4R6RA 1J4SA 1WS5A 1KUJA 4R6QA 1UGXA 1PXDA 3R50A 4WOGA 1TP8A 3R52A 2BMZA 4R6OA 3AQGA 3LL2A 3MIVA 3LLYA 1TOQA 3R51A 4R6PA 5J4XA 2HYQA 3APAA 3MIUA 4PIUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X1V A;  3VY6 A;  1WS4 A;  1UH0 A;  5J51 A;  1C3N A;  2GUE A;  2BMY A;  1VBP A;  3LLZ A;  1C3K A;  3MIT A;  4PIT A;  2JZ4 A;  5JM1 A;  1UGW A;  3VZF A;  1J4T A;  2GUX A;  1J4U A;  1WS5 C;  3LKY A;  4R6N A;  1UGY A;  1OUW A;  3VZE A;  1C3M A;  1JAC A;  2HYR A;  2BN0 A;  3P8S A;  5AV7 A;  3WOB A;  4AKB A;  1JOT A;  4AKD A;  1M26 A;  4AKC A;  3O44 A;  1XXR A;  1ZGR A;  2GUD A;  1WS4 C;  3WOC A;  1XXQ A;  4PIK A;  4MQ0 A;  3LM1 A;  3LL1 A;  4AK4 A;  1UH1 A;  2GTY A;  5EXG A;  4DDN A;  1VBO A;  2NU5 A;  5J4T A;  5BN6 E;  3LL0 A;  1KU8 A;  2GUC A;  3VY7 A;  4GX7 A;  5J50 A;  4PIF A;  1UGW C;  1UGY C;  3VZG A;  1ZGS A;  2NUO A;  1XEZ A;  4R6R A;  1J4S A;  1WS5 A;  1KUJ A;  4R6Q A;  1UGX A;  1PXD A;  3R50 A;  4WOG A;  1TP8 A;  3R52 A;  2BMZ A;  4R6O A;  3AQG A;  3LL2 A;  3MIV A;  3LLY A;  1TOQ A;  3R51 A;  4R6P A;  5J4X A;  2HYQ A;  3APA A;  3MIU A;  4PIU A; 
#chains in the Genus database with same CATH topology
 1X1V A;  3VY6 A;  1WS4 A;  1UH0 A;  4MOA A;  5J51 A;  4QX0 A;  1C3N A;  2GUE A;  2BMY A;  1VBP A;  3LLZ A;  1C3K A;  1W99 A;  3MIT A;  3TOW A;  4PIT A;  2JZ4 A;  5JM1 A;  1UGW A;  3VZF A;  1J4T A;  2GUX A;  1J4U A;  1WS5 C;  3LKY A;  4R6N A;  1UGY A;  1OUW A;  3VZE A;  1C3M A;  4QX1 A;  1JAC A;  2HYR A;  2BN0 A;  4QX2 A;  3P8S A;  5AV7 A;  3WOB A;  4ARX A;  4AKB A;  1JOT A;  4AKD A;  1M26 A;  4AKC A;  3O44 A;  1XXR A;  1ZGR A;  2GUD A;  1WS4 C;  3WOC A;  1XXQ A;  4PIK A;  4D8M A;  4MQ0 A;  3LM1 A;  3LL1 A;  4AK4 A;  1I5P A;  1UH1 A;  2GTY A;  5EXG A;  4DDN A;  1VBO A;  2QP2 A;  2NU5 A;  5J4T A;  1JI6 A;  5BN6 E;  3LL0 A;  1KU8 A;  4QX3 A;  2GUC A;  3VY7 A;  4GX7 A;  5J50 A;  4PIF A;  1UGW C;  1UGY C;  3VZG A;  1ZGS A;  2NUO A;  4ARY A;  1VMO A;  1XEZ A;  4R6R A;  1J4S A;  1WS5 A;  1KUJ A;  4R6Q A;  1UGX A;  2C9K A;  4W8J A;  1PXD A;  1CIY A;  3R50 A;  4WOG A;  1TP8 A;  3R52 A;  2BMZ A;  4R6O A;  3AQG A;  3LL2 A;  3MIV A;  3LLY A;  1TOQ A;  3R51 A;  4R6P A;  1DLC A;  5J4X A;  3EB7 A;  2HYQ A;  3APA A;  3MIU A;  4PIU A; 
#chains in the Genus database with same CATH homology
 1X1V A;  3VY6 A;  1WS4 A;  1UH0 A;  5J51 A;  1C3N A;  2GUE A;  2BMY A;  1VBP A;  3LLZ A;  1C3K A;  3MIT A;  4PIT A;  2JZ4 A;  5JM1 A;  1UGW A;  3VZF A;  1J4T A;  2GUX A;  1J4U A;  1WS5 C;  3LKY A;  4R6N A;  1UGY A;  1OUW A;  3VZE A;  1C3M A;  1JAC A;  2HYR A;  2BN0 A;  3P8S A;  5AV7 A;  3WOB A;  4AKB A;  1JOT A;  4AKD A;  1M26 A;  4AKC A;  3O44 A;  1XXR A;  1ZGR A;  2GUD A;  1WS4 C;  3WOC A;  1XXQ A;  4PIK A;  4MQ0 A;  3LM1 A;  3LL1 A;  4AK4 A;  1UH1 A;  2GTY A;  5EXG A;  4DDN A;  1VBO A;  2NU5 A;  5J4T A;  5BN6 E;  3LL0 A;  1KU8 A;  2GUC A;  3VY7 A;  4GX7 A;  5J50 A;  4PIF A;  1UGW C;  1UGY C;  3VZG A;  1ZGS A;  2NUO A;  1XEZ A;  4R6R A;  1J4S A;  1WS5 A;  1KUJ A;  4R6Q A;  1UGX A;  1PXD A;  3R50 A;  4WOG A;  1TP8 A;  3R52 A;  2BMZ A;  4R6O A;  3AQG A;  3LL2 A;  3MIV A;  3LLY A;  1TOQ A;  3R51 A;  4R6P A;  5J4X A;  2HYQ A;  3APA A;  3MIU A;  4PIU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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