1VBPA

Crystal structure of artocarpin-mannopentose complex
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
148
structure length
148
Chain Sequence
SQTITVGSWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKNVKIELKFPDEFLESVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGIHMSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the carbohydrate specificities of artocarpin: variation in the length of a loop as a strategy for generating ligand specificity
pubmed doi rcsb
molecule tags Plant protein
molecule keywords artocarpin
total genus 25
structure length 148
sequence length 148
chains with identical sequence B
ec nomenclature
pdb deposition date 2004-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1vbpA00
1WS4C 1WS5A 1XXRA 4AK4A 2GUDA 1C3KA 5J50A 3VY6A 5J4XA 1XEZA 3VZGA 1TP8A 4DDNA 2BMZA 1VBPA 1C3MA 4MQ0A 4AKDA 5JM1A 4AKBA 3VZEA 1WS5C 1UGXA 3MIVA 1VBOA 1TOQA 4PIFA 1J4SA 1JOTA 3LLZA 3AQGA 3WOBA 5J51A 3APAA 1J4TA 4R6QA 1J4UA 3LL2A 4R6OA 2BMYA 2GUCA 4PIKA 1ZGRA 3WOCA 5AV7A 1ZGSA 1C3NA 4R6PA 3LL1A 1X1VA 3LKYA 1UH1A 1XXQA 3R50A 4GX7A 2BN0A 1M26A 2NUOA 1KUJA 1OUWA 1UGYC 1UGWC 2HYQA 4WOGA 1UGYA 3MITA 1UGWA 4R6RA 2GUXA 1UH0A 2GUEA 1WS4A 3VZFA 1JACA 5J4TA 3LLYA 2JZ4A 3VY7A 3LM1A 4AKCA 5BN6E 4PITA 1PXDA 3O44A 1KU8A 3R52A 5EXGA 3P8SA 4PIUA 2HYRA 3LL0A 4R6NA 3R51A 2GTYA 3MIUA 2NU5A
chains in the Genus database with same CATH superfamily
1WS4C 1WS5A 4QX0A 1XXRA 4AK4A 1VMOA 1C3KA 2GUDA 5J50A 4ARYA 3VY6A 5J4XA 1XEZA 3EB7A 3VZGA 1TP8A 4DDNA 4QX2A 2BMZA 1VBPA 1C3MA 4MQ0A 4AKDA 5JM1A 4AKBA 3VZEA 1CIYA 1WS5C 1UGXA 3MIVA 1VBOA 1TOQA 4PIFA 1J4SA 4QX1A 1JOTA 3LLZA 3AQGA 3WOBA 4QX3A 5J51A 3APAA 1J4TA 4R6QA 1J4UA 3LL2A 4R6OA 2BMYA 4MOAA 2GUCA 4PIKA 1ZGRA 3WOCA 5AV7A 1ZGSA 1C3NA 3LL1A 4R6PA 1X1VA 3LKYA 1UH1A 1XXQA 3R50A 4GX7A 2BN0A 4W8JA 1M26A 2NUOA 2C9KA 1KUJA 1OUWA 1UGYC 4D8MA 1UGWC 2HYQA 4WOGA 1UGYA 3MITA 1UGWA 1I5PA 4R6RA 2GUXA 1UH0A 1W99A 2GUEA 4ARXA 2QP2A 3VZFA 1WS4A 1JI6A 1JACA 5J4TA 3LLYA 2JZ4A 3VY7A 3LM1A 1DLCA 3TOWA 4AKCA 5BN6E 4PITA 1PXDA 3O44A 1KU8A 3R52A 5EXGA 3P8SA 4PIUA 2HYRA 3LL0A 4R6NA 3R51A 2GTYA 3MIUA 2NU5A
chains in the Genus database with same CATH topology
1WS4C 1WS5A 1XXRA 4AK4A 2GUDA 1C3KA 5J50A 3VY6A 5J4XA 1XEZA 3VZGA 1TP8A 4DDNA 2BMZA 1VBPA 1C3MA 4MQ0A 4AKDA 5JM1A 4AKBA 3VZEA 1WS5C 1UGXA 3MIVA 1VBOA 1TOQA 4PIFA 1J4SA 1JOTA 3LLZA 3AQGA 3WOBA 5J51A 3APAA 1J4TA 4R6QA 1J4UA 3LL2A 4R6OA 2BMYA 2GUCA 4PIKA 1ZGRA 3WOCA 5AV7A 1ZGSA 1C3NA 4R6PA 3LL1A 1X1VA 3LKYA 1UH1A 1XXQA 3R50A 4GX7A 2BN0A 1M26A 2NUOA 1KUJA 1OUWA 1UGYC 1UGWC 2HYQA 4WOGA 1UGYA 3MITA 1UGWA 4R6RA 2GUXA 1UH0A 2GUEA 1WS4A 3VZFA 1JACA 5J4TA 3LLYA 2JZ4A 3VY7A 3LM1A 4AKCA 5BN6E 4PITA 1PXDA 3O44A 1KU8A 3R52A 5EXGA 3P8SA 4PIUA 2HYRA 3LL0A 4R6NA 3R51A 2GTYA 3MIUA 2NU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WS4 C;  1WS5 A;  1XXR A;  4AK4 A;  2GUD A;  1C3K A;  5J50 A;  3VY6 A;  5J4X A;  1XEZ A;  3VZG A;  1TP8 A;  4DDN A;  2BMZ A;  1VBP A;  1C3M A;  4MQ0 A;  4AKD A;  5JM1 A;  4AKB A;  3VZE A;  1WS5 C;  1UGX A;  3MIV A;  1VBO A;  1TOQ A;  4PIF A;  1J4S A;  1JOT A;  3LLZ A;  3AQG A;  3WOB A;  5J51 A;  3APA A;  1J4T A;  4R6Q A;  1J4U A;  3LL2 A;  4R6O A;  2BMY A;  2GUC A;  4PIK A;  1ZGR A;  3WOC A;  5AV7 A;  1ZGS A;  1C3N A;  4R6P A;  3LL1 A;  1X1V A;  3LKY A;  1UH1 A;  1XXQ A;  3R50 A;  4GX7 A;  2BN0 A;  1M26 A;  2NUO A;  1KUJ A;  1OUW A;  1UGY C;  1UGW C;  2HYQ A;  4WOG A;  1UGY A;  3MIT A;  1UGW A;  4R6R A;  2GUX A;  1UH0 A;  2GUE A;  1WS4 A;  3VZF A;  1JAC A;  5J4T A;  3LLY A;  2JZ4 A;  3VY7 A;  3LM1 A;  4AKC A;  5BN6 E;  4PIT A;  1PXD A;  3O44 A;  1KU8 A;  3R52 A;  5EXG A;  3P8S A;  4PIU A;  2HYR A;  3LL0 A;  4R6N A;  3R51 A;  2GTY A;  3MIU A;  2NU5 A; 
#chains in the Genus database with same CATH topology
 1WS4 C;  1WS5 A;  4QX0 A;  1XXR A;  4AK4 A;  1VMO A;  1C3K A;  2GUD A;  5J50 A;  4ARY A;  3VY6 A;  5J4X A;  1XEZ A;  3EB7 A;  3VZG A;  1TP8 A;  4DDN A;  4QX2 A;  2BMZ A;  1VBP A;  1C3M A;  4MQ0 A;  4AKD A;  5JM1 A;  4AKB A;  3VZE A;  1CIY A;  1WS5 C;  1UGX A;  3MIV A;  1VBO A;  1TOQ A;  4PIF A;  1J4S A;  4QX1 A;  1JOT A;  3LLZ A;  3AQG A;  3WOB A;  4QX3 A;  5J51 A;  3APA A;  1J4T A;  4R6Q A;  1J4U A;  3LL2 A;  4R6O A;  2BMY A;  4MOA A;  2GUC A;  4PIK A;  1ZGR A;  3WOC A;  5AV7 A;  1ZGS A;  1C3N A;  3LL1 A;  4R6P A;  1X1V A;  3LKY A;  1UH1 A;  1XXQ A;  3R50 A;  4GX7 A;  2BN0 A;  4W8J A;  1M26 A;  2NUO A;  2C9K A;  1KUJ A;  1OUW A;  1UGY C;  4D8M A;  1UGW C;  2HYQ A;  4WOG A;  1UGY A;  3MIT A;  1UGW A;  1I5P A;  4R6R A;  2GUX A;  1UH0 A;  1W99 A;  2GUE A;  4ARX A;  2QP2 A;  3VZF A;  1WS4 A;  1JI6 A;  1JAC A;  5J4T A;  3LLY A;  2JZ4 A;  3VY7 A;  3LM1 A;  1DLC A;  3TOW A;  4AKC A;  5BN6 E;  4PIT A;  1PXD A;  3O44 A;  1KU8 A;  3R52 A;  5EXG A;  3P8S A;  4PIU A;  2HYR A;  3LL0 A;  4R6N A;  3R51 A;  2GTY A;  3MIU A;  2NU5 A; 
#chains in the Genus database with same CATH homology
 1WS4 C;  1WS5 A;  1XXR A;  4AK4 A;  2GUD A;  1C3K A;  5J50 A;  3VY6 A;  5J4X A;  1XEZ A;  3VZG A;  1TP8 A;  4DDN A;  2BMZ A;  1VBP A;  1C3M A;  4MQ0 A;  4AKD A;  5JM1 A;  4AKB A;  3VZE A;  1WS5 C;  1UGX A;  3MIV A;  1VBO A;  1TOQ A;  4PIF A;  1J4S A;  1JOT A;  3LLZ A;  3AQG A;  3WOB A;  5J51 A;  3APA A;  1J4T A;  4R6Q A;  1J4U A;  3LL2 A;  4R6O A;  2BMY A;  2GUC A;  4PIK A;  1ZGR A;  3WOC A;  5AV7 A;  1ZGS A;  1C3N A;  4R6P A;  3LL1 A;  1X1V A;  3LKY A;  1UH1 A;  1XXQ A;  3R50 A;  4GX7 A;  2BN0 A;  1M26 A;  2NUO A;  1KUJ A;  1OUW A;  1UGY C;  1UGW C;  2HYQ A;  4WOG A;  1UGY A;  3MIT A;  1UGW A;  4R6R A;  2GUX A;  1UH0 A;  2GUE A;  1WS4 A;  3VZF A;  1JAC A;  5J4T A;  3LLY A;  2JZ4 A;  3VY7 A;  3LM1 A;  4AKC A;  5BN6 E;  4PIT A;  1PXD A;  3O44 A;  1KU8 A;  3R52 A;  5EXG A;  3P8S A;  4PIU A;  2HYR A;  3LL0 A;  4R6N A;  3R51 A;  2GTY A;  3MIU A;  2NU5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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