1VKWA

Crystal structure of a putative nitroreductase (tm1586) from thermotoga maritima msb8 at 2.00 a resolution
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
217
structure length
217
Chain Sequence
GSDKIHHHHHHMNIFEAIENRHSVRDFLERKMPERVKDDIENLLVKFITKKLDWKINLSSFPSYIYAKAEKHFDELVEYGFQGEQIVLFLTAQGFGTCWMARSPHPDVPYIIVFGYPRTRNFTRKRRPITSFLENDLEELPPEIVKIVEMTILAPSALNRQPWKIKYTGGELCISSERPVDLGIALSHAYLTAREIFKREPVIQKRGEDTYCLILNP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of Putative Nitroreductase (TM1586) from Thermotoga maritima at 2.00 A resolution
rcsb
molecule tags Oxidoreductase
source organism Thermotoga maritima
molecule keywords putative nitroreductase
total genus 60
structure length 217
sequence length 217
ec nomenclature
pdb deposition date 2004-06-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14512 TM1586_NiRdase Putative TM nitroreductase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1vkwA01
3.40.109.30 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase putative nitroreductase (tm1586), domain 2 1vkwA02
2ISLA 2ISJA 3GB5A 1V5YA 4XOOA 4QLYA 1NECA 1ICUA 3N2SA 2I7HA 3EOFA 4BN9A 3BM1A 1ZCHA 3HOIA 4XOMA 3GH8A 2R01A 1KQBA 1YKIA 3TNZA 1VFRA 1ICVA 4BNBA 1KQCA 1IDTA 5J6CA 5KO7A 3GFDA 3E10A 3GAGA 5KO8A 4DN2A 3GE5A 1OOQA 2ISKA 3GR3A 1ICRA 1DS7A 4EO3A 4TTBA 2HAYA 1YLUA 2B67A 4TTCA 3G14A 3KWKA 1V5ZA 3QDLA 3PXVA 2IFAA 1NOXA 3M5KA 2YMVA 5HEIA 1VKWA 2WQFA 1BKJA 2FREA 1OO5A 3EO7A 2BKJA 4BN7A 4BN6A 3E39A 3OF4A 1OONA 3H4OA 1OO6A 3BM2A 3GBHA 4QLXA 3GE6A 1KQDA 3HZNA 4XOQA 2H0UA 1F5VA 5HDJA 3X22A 3EK3A 3BEMA 3K6HA 1YWQA 2WZVA 3TO0A 4G8SA 3GFAA 1YLRA 4URPA 4BN8A 3EO8A 3HJ9A 3KOQA 5KRDA 2WZWA 3X21A
chains in the Genus database with same CATH superfamily
2ISLA 2ISJA 3GB5A 1V5YA 4XOOA 4QLYA 1NECA 1ICUA 3N2SA 2I7HA 3EOFA 4BN9A 3BM1A 1ZCHA 3HOIA 4XOMA 3GH8A 2R01A 1KQBA 1YKIA 3TNZA 1J6RA 1VFRA 1ICVA 4BNBA 1KQCA 1IDTA 5J6CA 5KO7A 3GFDA 3E10A 3GAGA 5KO8A 4DN2A 3GE5A 1OOQA 2ISKA 3GR3A 1ICRA 1DS7A 4EO3A 4TTBA 2HAYA 1YLUA 2B67A 4TTCA 3G14A 3KWKA 1V5ZA 3QDLA 3PXVA 2IFAA 1NOXA 3M5KA 2YMVA 5HEIA 1VKWA 2WQFA 1BKJA 2FREA 1OO5A 3EO7A 2BKJA 4BN7A 4BN6A 3E39A 3OF4A 1OONA 3H4OA 1OO6A 3BM2A 3GBHA 4QLXA 3GE6A 1KQDA 3HZNA 4XOQA 2H0UA 1F5VA 5HDJA 3X22A 3EK3A 3BEMA 3K6HA 1YWQA 2WZVA 3TO0A 4G8SA 3GFAA 1YLRA 4URPA 4BN8A 3EO8A 3HJ9A 3KOQA 5KRDA 2WZWA 3X21A
chains in the Genus database with same CATH topology
2ISLA 2ISJA 3GB5A 1V5YA 4XOOA 4QLYA 1NECA 1ICUA 3N2SA 2I7HA 3EOFA 4BN9A 3BM1A 1ZCHA 3HOIA 4XOMA 3GH8A 2R01A 1KQBA 1YKIA 3TNZA 1J6RA 1VFRA 1ICVA 4BNBA 1KQCA 1IDTA 5J6CA 5KO7A 3GFDA 3E10A 3GAGA 5KO8A 4DN2A 3GE5A 1OOQA 2ISKA 3GR3A 1ICRA 1DS7A 4EO3A 4TTBA 2HAYA 1YLUA 2B67A 4TTCA 3G14A 3KWKA 1V5ZA 3QDLA 3PXVA 2IFAA 1NOXA 3M5KA 2YMVA 5HEIA 1VKWA 2WQFA 1BKJA 2FREA 1OO5A 3EO7A 2BKJA 4BN7A 4BN6A 3E39A 3OF4A 1OONA 3H4OA 1OO6A 3BM2A 3GBHA 4QLXA 3GE6A 1KQDA 3HZNA 4XOQA 2H0UA 1F5VA 5HDJA 3X22A 3EK3A 3BEMA 3K6HA 1YWQA 2WZVA 3TO0A 4G8SA 3GFAA 1YLRA 4URPA 4BN8A 3EO8A 3HJ9A 3KOQA 5KRDA 2WZWA 3X21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ISL A;  2ISJ A;  3GB5 A;  1V5Y A;  4XOO A;  4QLY A;  1NEC A;  1ICU A;  3N2S A;  2I7H A;  3EOF A;  4BN9 A;  3BM1 A;  1ZCH A;  3HOI A;  4XOM A;  3GH8 A;  2R01 A;  1KQB A;  1YKI A;  3TNZ A;  1VFR A;  1ICV A;  4BNB A;  1KQC A;  1IDT A;  5J6C A;  5KO7 A;  3GFD A;  3E10 A;  3GAG A;  5KO8 A;  4DN2 A;  3GE5 A;  1OOQ A;  2ISK A;  3GR3 A;  1ICR A;  1DS7 A;  4EO3 A;  4TTB A;  2HAY A;  1YLU A;  2B67 A;  4TTC A;  3G14 A;  3KWK A;  1V5Z A;  3QDL A;  3PXV A;  2IFA A;  1NOX A;  3M5K A;  2YMV A;  5HEI A;  1VKW A;  2WQF A;  1BKJ A;  2FRE A;  1OO5 A;  3EO7 A;  2BKJ A;  4BN7 A;  4BN6 A;  3E39 A;  3OF4 A;  1OON A;  3H4O A;  1OO6 A;  3BM2 A;  3GBH A;  4QLX A;  3GE6 A;  1KQD A;  3HZN A;  4XOQ A;  2H0U A;  1F5V A;  5HDJ A;  3X22 A;  3EK3 A;  3BEM A;  3K6H A;  1YWQ A;  2WZV A;  3TO0 A;  4G8S A;  3GFA A;  1YLR A;  4URP A;  4BN8 A;  3EO8 A;  3HJ9 A;  3KOQ A;  5KRD A;  2WZW A;  3X21 A; 
#chains in the Genus database with same CATH topology
 2ISL A;  2ISJ A;  3GB5 A;  1V5Y A;  4XOO A;  4QLY A;  1NEC A;  1ICU A;  3N2S A;  2I7H A;  3EOF A;  4BN9 A;  3BM1 A;  1ZCH A;  3HOI A;  4XOM A;  3GH8 A;  2R01 A;  1KQB A;  1YKI A;  3TNZ A;  1J6R A;  1VFR A;  1ICV A;  4BNB A;  1KQC A;  1IDT A;  5J6C A;  5KO7 A;  3GFD A;  3E10 A;  3GAG A;  5KO8 A;  4DN2 A;  3GE5 A;  1OOQ A;  2ISK A;  3GR3 A;  1ICR A;  1DS7 A;  4EO3 A;  4TTB A;  2HAY A;  1YLU A;  2B67 A;  4TTC A;  3G14 A;  3KWK A;  1V5Z A;  3QDL A;  3PXV A;  2IFA A;  1NOX A;  3M5K A;  2YMV A;  5HEI A;  1VKW A;  2WQF A;  1BKJ A;  2FRE A;  1OO5 A;  3EO7 A;  2BKJ A;  4BN7 A;  4BN6 A;  3E39 A;  3OF4 A;  1OON A;  3H4O A;  1OO6 A;  3BM2 A;  3GBH A;  4QLX A;  3GE6 A;  1KQD A;  3HZN A;  4XOQ A;  2H0U A;  1F5V A;  5HDJ A;  3X22 A;  3EK3 A;  3BEM A;  3K6H A;  1YWQ A;  2WZV A;  3TO0 A;  4G8S A;  3GFA A;  1YLR A;  4URP A;  4BN8 A;  3EO8 A;  3HJ9 A;  3KOQ A;  5KRD A;  2WZW A;  3X21 A; 
#chains in the Genus database with same CATH homology
 2ISL A;  2ISJ A;  3GB5 A;  1V5Y A;  4XOO A;  4QLY A;  1NEC A;  1ICU A;  3N2S A;  2I7H A;  3EOF A;  4BN9 A;  3BM1 A;  1ZCH A;  3HOI A;  4XOM A;  3GH8 A;  2R01 A;  1KQB A;  1YKI A;  3TNZ A;  1J6R A;  1VFR A;  1ICV A;  4BNB A;  1KQC A;  1IDT A;  5J6C A;  5KO7 A;  3GFD A;  3E10 A;  3GAG A;  5KO8 A;  4DN2 A;  3GE5 A;  1OOQ A;  2ISK A;  3GR3 A;  1ICR A;  1DS7 A;  4EO3 A;  4TTB A;  2HAY A;  1YLU A;  2B67 A;  4TTC A;  3G14 A;  3KWK A;  1V5Z A;  3QDL A;  3PXV A;  2IFA A;  1NOX A;  3M5K A;  2YMV A;  5HEI A;  1VKW A;  2WQF A;  1BKJ A;  2FRE A;  1OO5 A;  3EO7 A;  2BKJ A;  4BN7 A;  4BN6 A;  3E39 A;  3OF4 A;  1OON A;  3H4O A;  1OO6 A;  3BM2 A;  3GBH A;  4QLX A;  3GE6 A;  1KQD A;  3HZN A;  4XOQ A;  2H0U A;  1F5V A;  5HDJ A;  3X22 A;  3EK3 A;  3BEM A;  3K6H A;  1YWQ A;  2WZV A;  3TO0 A;  4G8S A;  3GFA A;  1YLR A;  4URP A;  4BN8 A;  3EO8 A;  3HJ9 A;  3KOQ A;  5KRD A;  2WZW A;  3X21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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