1WKT | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	88
structure length	88
Chain Sequence	GDGYLIMCKNCDPNTGSCDWKQNWNTCVGIGANVHWMVTGGSTDGKQGCATIWEGSGCVGRSTTMCCPANTCCNINTGFYIRSYRRVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Toxin
publication title	Ancestral beta gamma-crystallin precursor structure in a yeast killer toxin. pubmed doi rcsb
molecule keywords	YEAST KILLER TOXIN
total genus	13
structure length	88
sequence length	88
ec nomenclature
pdb deposition date	1996-05-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF09207	Yeast-kill-tox	Yeast killer toxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.20	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Gamma-B Crystallin; domain 1	1wktA00

1WKTA
chains in the Genus database with same CATH superfamily

3QK3A 1GAMA 1C01A 1A45A 1I5IA 1F53A 1M8UA 1PRSA 3SO1A 1ZWOA 2KP5A 2KFBA 1DSLA 1OKIA 1ZWMA 2JDFA 2M3CA 4EL6A 1WKTA 2K1XA 3IAJA 1ZIRA 3SNYA 3HZBA 3ENUA 3UJZA 1ZIQA 4PSPA 2V2UA 1GCSA 2G98A 1A7HA 1HK0X 4IAUA 2M3TA 2BB2A 1NPSA 1HDFA 3HZ2A 2K1WA 4AKAA 1H4AX 1AMMA 1BLBA 1BHUA 2M3UA 2BV2A 4NI3A 5HT9A 2DADA 1PRRA 1YHPA 3CW3A 1HA4A 2A5MA 4W9AA 1YTQA 3I9HA 3ENTA 4GCRA 1G6EA 1AG4A 1ZGTA 4GR7A 4PSRA 2NBRA 4W9BA 2B1OA 1E7NA 4JGFA 1A5DA 3SNZA 1ELPA 5HT8A 3SO0A 2JDGA 1BD7A 3LWKA 4FD9A 1ZIEA 1GH5A
chains in the Genus database with same CATH topology

1BHUA 1F53A 1G6EA 3UJZA 1C01A 1GH5A 1WKTA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1WKT A; 
#chains in the Genus database with same CATH topology
 3QK3 A;  1GAM A;  1C01 A;  1A45 A;  1I5I A;  1F53 A;  1M8U A;  1PRS A;  3SO1 A;  1ZWO A;  2KP5 A;  2KFB A;  1DSL A;  1OKI A;  1ZWM A;  2JDF A;  2M3C A;  4EL6 A;  1WKT A;  2K1X A;  3IAJ A;  1ZIR A;  3SNY A;  3HZB A;  3ENU A;  3UJZ A;  1ZIQ A;  4PSP A;  2V2U A;  1GCS A;  2G98 A;  1A7H A;  1HK0 X;  4IAU A;  2M3T A;  2BB2 A;  1NPS A;  1HDF A;  3HZ2 A;  2K1W A;  4AKA A;  1H4A X;  1AMM A;  1BLB A;  1BHU A;  2M3U A;  2BV2 A;  4NI3 A;  5HT9 A;  2DAD A;  1PRR A;  1YHP A;  3CW3 A;  1HA4 A;  2A5M A;  4W9A A;  1YTQ A;  3I9H A;  3ENT A;  4GCR A;  1G6E A;  1AG4 A;  1ZGT A;  4GR7 A;  4PSR A;  2NBR A;  4W9B A;  2B1O A;  1E7N A;  4JGF A;  1A5D A;  3SNZ A;  1ELP A;  5HT8 A;  3SO0 A;  2JDG A;  1BD7 A;  3LWK A;  4FD9 A;  1ZIE A;  1GH5 A; 
#chains in the Genus database with same CATH homology
 1BHU A;  1F53 A;  1G6E A;  3UJZ A;  1C01 A;  1GH5 A;  1WKT A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1WKTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations