1WS4A

Crystal structure of jacalin- me-alpha-mannose complex: promiscuity vs specificity
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence G
ec nomenclature
pdb deposition date 2004-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ws4A00
1PXDA 4AKDA 3LLYA 3LL0A 1XXQA 5AV7A 2BN0A 1KUJA 1VBOA 3R51A 3WOCA 3VY6A 1M26A 1JOTA 1J4TA 3VY7A 3LKYA 5J51A 3LLZA 3MITA 1WS4C 1XXRA 4R6NA 4DDNA 4R6OA 1WS5A 1WS4A 3LM1A 4PIUA 1VBPA 2GUEA 1UGYC 2NUOA 5JM1A 1C3NA 1ZGRA 1J4SA 3O44A 4WOGA 3APAA 4AKBA 4PIKA 1X1VA 2BMZA 1UGYA 5EXGA 3LL2A 3R50A 1WS5C 1UH0A 5J4XA 4R6PA 1KU8A 1OUWA 3R52A 3VZFA 1TP8A 5J4TA 2NU5A 2JZ4A 3P8SA 5J50A 4MQ0A 1TOQA 3VZEA 5BN6E 4GX7A 1UGWC 1C3KA 1UGWA 3LL1A 4AK4A 1UH1A 3MIVA 1ZGSA 2BMYA 1UGXA 2GUXA 4R6QA 4PIFA 1XEZA 1J4UA 4AKCA 2HYQA 1JACA 4PITA 2GUCA 3AQGA 3VZGA 2HYRA 3MIUA 4R6RA 2GUDA 3WOBA 1C3MA 2GTYA
chains in the Genus database with same CATH superfamily
1PXDA 1CIYA 4AKDA 3LLYA 3LL0A 4MOAA 1XXQA 5AV7A 2BN0A 1KUJA 1VBOA 3R51A 3WOCA 3VY6A 1M26A 1JOTA 1J4TA 2C9KA 3VY7A 3LKYA 5J51A 3LLZA 1VMOA 3MITA 1WS4C 1XXRA 4R6NA 4DDNA 4ARYA 1DLCA 4R6OA 1WS5A 1W99A 1WS4A 3LM1A 2QP2A 4PIUA 4ARXA 4QX2A 1VBPA 2GUEA 1UGYC 4D8MA 2NUOA 5JM1A 1C3NA 1ZGRA 1J4SA 3O44A 4WOGA 3APAA 4AKBA 4PIKA 1X1VA 2BMZA 1UGYA 5EXGA 3LL2A 3R50A 1WS5C 3TOWA 1UH0A 4R6PA 5J4XA 1KU8A 1OUWA 3R52A 3VZFA 1TP8A 5J4TA 2NU5A 2JZ4A 3P8SA 5J50A 4QX3A 3EB7A 1JI6A 4MQ0A 1TOQA 3VZEA 1I5PA 5BN6E 4GX7A 4QX0A 1UGWC 1C3KA 1UGWA 3LL1A 4AK4A 1UH1A 4W8JA 3MIVA 1ZGSA 2BMYA 1UGXA 2GUXA 4R6QA 4PIFA 1XEZA 1J4UA 4AKCA 4QX1A 2HYQA 1JACA 4PITA 2GUCA 3AQGA 3VZGA 2HYRA 3MIUA 4R6RA 2GUDA 3WOBA 1C3MA 2GTYA
chains in the Genus database with same CATH topology
1PXDA 4AKDA 3LLYA 3LL0A 1XXQA 5AV7A 2BN0A 1KUJA 1VBOA 3R51A 3WOCA 3VY6A 1M26A 1JOTA 1J4TA 3VY7A 3LKYA 5J51A 3LLZA 3MITA 1WS4C 1XXRA 4R6NA 4DDNA 4R6OA 1WS5A 1WS4A 3LM1A 4PIUA 1VBPA 2GUEA 1UGYC 2NUOA 5JM1A 1C3NA 1ZGRA 1J4SA 3O44A 4WOGA 3APAA 4AKBA 4PIKA 1X1VA 2BMZA 1UGYA 5EXGA 3LL2A 3R50A 1WS5C 1UH0A 5J4XA 4R6PA 1KU8A 1OUWA 3R52A 3VZFA 1TP8A 5J4TA 2NU5A 2JZ4A 3P8SA 5J50A 4MQ0A 1TOQA 3VZEA 5BN6E 4GX7A 1UGWC 1C3KA 1UGWA 3LL1A 4AK4A 1UH1A 3MIVA 1ZGSA 2BMYA 1UGXA 2GUXA 4R6QA 4PIFA 1XEZA 1J4UA 4AKCA 2HYQA 1JACA 4PITA 2GUCA 3AQGA 3VZGA 2HYRA 3MIUA 4R6RA 2GUDA 3WOBA 1C3MA 2GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PXD A;  4AKD A;  3LLY A;  3LL0 A;  1XXQ A;  5AV7 A;  2BN0 A;  1KUJ A;  1VBO A;  3R51 A;  3WOC A;  3VY6 A;  1M26 A;  1JOT A;  1J4T A;  3VY7 A;  3LKY A;  5J51 A;  3LLZ A;  3MIT A;  1WS4 C;  1XXR A;  4R6N A;  4DDN A;  4R6O A;  1WS5 A;  1WS4 A;  3LM1 A;  4PIU A;  1VBP A;  2GUE A;  1UGY C;  2NUO A;  5JM1 A;  1C3N A;  1ZGR A;  1J4S A;  3O44 A;  4WOG A;  3APA A;  4AKB A;  4PIK A;  1X1V A;  2BMZ A;  1UGY A;  5EXG A;  3LL2 A;  3R50 A;  1WS5 C;  1UH0 A;  5J4X A;  4R6P A;  1KU8 A;  1OUW A;  3R52 A;  3VZF A;  1TP8 A;  5J4T A;  2NU5 A;  2JZ4 A;  3P8S A;  5J50 A;  4MQ0 A;  1TOQ A;  3VZE A;  5BN6 E;  4GX7 A;  1UGW C;  1C3K A;  1UGW A;  3LL1 A;  4AK4 A;  1UH1 A;  3MIV A;  1ZGS A;  2BMY A;  1UGX A;  2GUX A;  4R6Q A;  4PIF A;  1XEZ A;  1J4U A;  4AKC A;  2HYQ A;  1JAC A;  4PIT A;  2GUC A;  3AQG A;  3VZG A;  2HYR A;  3MIU A;  4R6R A;  2GUD A;  3WOB A;  1C3M A;  2GTY A; 
#chains in the Genus database with same CATH topology
 1PXD A;  1CIY A;  4AKD A;  3LLY A;  3LL0 A;  4MOA A;  1XXQ A;  5AV7 A;  2BN0 A;  1KUJ A;  1VBO A;  3R51 A;  3WOC A;  3VY6 A;  1M26 A;  1JOT A;  1J4T A;  2C9K A;  3VY7 A;  3LKY A;  5J51 A;  3LLZ A;  1VMO A;  3MIT A;  1WS4 C;  1XXR A;  4R6N A;  4DDN A;  4ARY A;  1DLC A;  4R6O A;  1WS5 A;  1W99 A;  1WS4 A;  3LM1 A;  2QP2 A;  4PIU A;  4ARX A;  4QX2 A;  1VBP A;  2GUE A;  1UGY C;  4D8M A;  2NUO A;  5JM1 A;  1C3N A;  1ZGR A;  1J4S A;  3O44 A;  4WOG A;  3APA A;  4AKB A;  4PIK A;  1X1V A;  2BMZ A;  1UGY A;  5EXG A;  3LL2 A;  3R50 A;  1WS5 C;  3TOW A;  1UH0 A;  4R6P A;  5J4X A;  1KU8 A;  1OUW A;  3R52 A;  3VZF A;  1TP8 A;  5J4T A;  2NU5 A;  2JZ4 A;  3P8S A;  5J50 A;  4QX3 A;  3EB7 A;  1JI6 A;  4MQ0 A;  1TOQ A;  3VZE A;  1I5P A;  5BN6 E;  4GX7 A;  4QX0 A;  1UGW C;  1C3K A;  1UGW A;  3LL1 A;  4AK4 A;  1UH1 A;  4W8J A;  3MIV A;  1ZGS A;  2BMY A;  1UGX A;  2GUX A;  4R6Q A;  4PIF A;  1XEZ A;  1J4U A;  4AKC A;  4QX1 A;  2HYQ A;  1JAC A;  4PIT A;  2GUC A;  3AQG A;  3VZG A;  2HYR A;  3MIU A;  4R6R A;  2GUD A;  3WOB A;  1C3M A;  2GTY A; 
#chains in the Genus database with same CATH homology
 1PXD A;  4AKD A;  3LLY A;  3LL0 A;  1XXQ A;  5AV7 A;  2BN0 A;  1KUJ A;  1VBO A;  3R51 A;  3WOC A;  3VY6 A;  1M26 A;  1JOT A;  1J4T A;  3VY7 A;  3LKY A;  5J51 A;  3LLZ A;  3MIT A;  1WS4 C;  1XXR A;  4R6N A;  4DDN A;  4R6O A;  1WS5 A;  1WS4 A;  3LM1 A;  4PIU A;  1VBP A;  2GUE A;  1UGY C;  2NUO A;  5JM1 A;  1C3N A;  1ZGR A;  1J4S A;  3O44 A;  4WOG A;  3APA A;  4AKB A;  4PIK A;  1X1V A;  2BMZ A;  1UGY A;  5EXG A;  3LL2 A;  3R50 A;  1WS5 C;  1UH0 A;  5J4X A;  4R6P A;  1KU8 A;  1OUW A;  3R52 A;  3VZF A;  1TP8 A;  5J4T A;  2NU5 A;  2JZ4 A;  3P8S A;  5J50 A;  4MQ0 A;  1TOQ A;  3VZE A;  5BN6 E;  4GX7 A;  1UGW C;  1C3K A;  1UGW A;  3LL1 A;  4AK4 A;  1UH1 A;  3MIV A;  1ZGS A;  2BMY A;  1UGX A;  2GUX A;  4R6Q A;  4PIF A;  1XEZ A;  1J4U A;  4AKC A;  2HYQ A;  1JAC A;  4PIT A;  2GUC A;  3AQG A;  3VZG A;  2HYR A;  3MIU A;  4R6R A;  2GUD A;  3WOB A;  1C3M A;  2GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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