1WS4 | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
total genus	29
structure length	133
sequence length	133
chains with identical sequence	G
ec nomenclature
pdb deposition date	2004-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1ws4A00

4AK4A 1WS5A 1ZGSA 4R6OA 4R6RA 3R51A 1KU8A 2GUCA 3MIVA 1J4SA 3APAA 1X1VA 2NUOA 1VBPA 5JM1A 3VY7A 5J50A 5J4TA 1TP8A 3MITA 1UGXA 3R52A 3VZEA 2GUXA 3R50A 1TOQA 2GUDA 1WS4A 1J4TA 2BMZA 1C3NA 1UGWC 2BMYA 2GUEA 4R6NA 3LL2A 3P8SA 1KUJA 4PIKA 3O44A 5J4XA 2NU5A 1UGYC 1JOTA 4AKCA 3VZFA 5AV7A 1XXRA 1XEZA 4MQ0A 2HYQA 5EXGA 3LL0A 3WOCA 3VZGA 3LKYA 1WS5C 4DDNA 2BN0A 1M26A 3LM1A 4PITA 3MIUA 4WOGA 1J4UA 3LLYA 1OUWA 4R6PA 3VY6A 4AKDA 4GX7A 2GTYA 1WS4C 4PIUA 1XXQA 4PIFA 4AKBA 3AQGA 1UGWA 5J51A 1ZGRA 2HYRA 1UH0A 3LL1A 4R6QA 1UGYA 5BN6E 3WOBA 1PXDA 1VBOA 1JACA 2JZ4A 1C3KA 1UH1A 3LLZA 1C3MA
chains in the Genus database with same CATH superfamily

4AK4A 1WS5A 1ZGSA 4R6OA 4R6RA 3R51A 1KU8A 2GUCA 3MIVA 1W99A 1J4SA 3APAA 1X1VA 4QX0A 2NUOA 1VBPA 5JM1A 3VY7A 4QX1A 5J50A 5J4TA 4MOAA 1TP8A 3MITA 1UGXA 3R52A 3VZEA 2C9KA 4QX2A 2GUXA 3R50A 1TOQA 4D8MA 2GUDA 1WS4A 1J4TA 2BMZA 1C3NA 1UGWC 2BMYA 2GUEA 4R6NA 3LL2A 3P8SA 1KUJA 1I5PA 4PIKA 3O44A 5J4XA 2NU5A 1UGYC 1JOTA 4AKCA 3VZFA 5AV7A 1XXRA 1XEZA 4MQ0A 2HYQA 1CIYA 3LL0A 5EXGA 4W8JA 1DLCA 3WOCA 3VZGA 3LKYA 1WS5C 4DDNA 3EB7A 2BN0A 1M26A 3LM1A 4PITA 4ARYA 3MIUA 4WOGA 1J4UA 3LLYA 1OUWA 4R6PA 3VY6A 4AKDA 4GX7A 2GTYA 1WS4C 4PIUA 1XXQA 4PIFA 4AKBA 4ARXA 3AQGA 1UGWA 5J51A 1ZGRA 2HYRA 1UH0A 3LL1A 3TOWA 1JI6A 4R6QA 1UGYA 5BN6E 3WOBA 1PXDA 1VBOA 1JACA 2JZ4A 1C3KA 4QX3A 1UH1A 2QP2A 3LLZA 1C3MA 1VMOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4AK4 A;  1WS5 A;  1ZGS A;  4R6O A;  4R6R A;  3R51 A;  1KU8 A;  2GUC A;  3MIV A;  1J4S A;  3APA A;  1X1V A;  2NUO A;  1VBP A;  5JM1 A;  3VY7 A;  5J50 A;  5J4T A;  1TP8 A;  3MIT A;  1UGX A;  3R52 A;  3VZE A;  2GUX A;  3R50 A;  1TOQ A;  2GUD A;  1WS4 A;  1J4T A;  2BMZ A;  1C3N A;  1UGW C;  2BMY A;  2GUE A;  4R6N A;  3LL2 A;  3P8S A;  1KUJ A;  4PIK A;  3O44 A;  5J4X A;  2NU5 A;  1UGY C;  1JOT A;  4AKC A;  3VZF A;  5AV7 A;  1XXR A;  1XEZ A;  4MQ0 A;  2HYQ A;  5EXG A;  3LL0 A;  3WOC A;  3VZG A;  3LKY A;  1WS5 C;  4DDN A;  2BN0 A;  1M26 A;  3LM1 A;  4PIT A;  3MIU A;  4WOG A;  1J4U A;  3LLY A;  1OUW A;  4R6P A;  3VY6 A;  4AKD A;  4GX7 A;  2GTY A;  1WS4 C;  4PIU A;  1XXQ A;  4PIF A;  4AKB A;  3AQG A;  1UGW A;  5J51 A;  1ZGR A;  2HYR A;  1UH0 A;  3LL1 A;  4R6Q A;  1UGY A;  5BN6 E;  3WOB A;  1PXD A;  1VBO A;  1JAC A;  2JZ4 A;  1C3K A;  1UH1 A;  3LLZ A;  1C3M A; 
#chains in the Genus database with same CATH topology
 4AK4 A;  1WS5 A;  1ZGS A;  4R6O A;  4R6R A;  3R51 A;  1KU8 A;  2GUC A;  3MIV A;  1W99 A;  1J4S A;  3APA A;  1X1V A;  4QX0 A;  2NUO A;  1VBP A;  5JM1 A;  3VY7 A;  4QX1 A;  5J50 A;  5J4T A;  4MOA A;  1TP8 A;  3MIT A;  1UGX A;  3R52 A;  3VZE A;  2C9K A;  4QX2 A;  2GUX A;  3R50 A;  1TOQ A;  4D8M A;  2GUD A;  1WS4 A;  1J4T A;  2BMZ A;  1C3N A;  1UGW C;  2BMY A;  2GUE A;  4R6N A;  3LL2 A;  3P8S A;  1KUJ A;  1I5P A;  4PIK A;  3O44 A;  5J4X A;  2NU5 A;  1UGY C;  1JOT A;  4AKC A;  3VZF A;  5AV7 A;  1XXR A;  1XEZ A;  4MQ0 A;  2HYQ A;  1CIY A;  3LL0 A;  5EXG A;  4W8J A;  1DLC A;  3WOC A;  3VZG A;  3LKY A;  1WS5 C;  4DDN A;  3EB7 A;  2BN0 A;  1M26 A;  3LM1 A;  4PIT A;  4ARY A;  3MIU A;  4WOG A;  1J4U A;  3LLY A;  1OUW A;  4R6P A;  3VY6 A;  4AKD A;  4GX7 A;  2GTY A;  1WS4 C;  4PIU A;  1XXQ A;  4PIF A;  4AKB A;  4ARX A;  3AQG A;  1UGW A;  5J51 A;  1ZGR A;  2HYR A;  1UH0 A;  3LL1 A;  3TOW A;  1JI6 A;  4R6Q A;  1UGY A;  5BN6 E;  3WOB A;  1PXD A;  1VBO A;  1JAC A;  2JZ4 A;  1C3K A;  4QX3 A;  1UH1 A;  2QP2 A;  3LLZ A;  1C3M A;  1VMO A; 
#chains in the Genus database with same CATH homology
 4AK4 A;  1WS5 A;  1ZGS A;  4R6O A;  4R6R A;  3R51 A;  1KU8 A;  2GUC A;  3MIV A;  1J4S A;  3APA A;  1X1V A;  2NUO A;  1VBP A;  5JM1 A;  3VY7 A;  5J50 A;  5J4T A;  1TP8 A;  3MIT A;  1UGX A;  3R52 A;  3VZE A;  2GUX A;  3R50 A;  1TOQ A;  2GUD A;  1WS4 A;  1J4T A;  2BMZ A;  1C3N A;  1UGW C;  2BMY A;  2GUE A;  4R6N A;  3LL2 A;  3P8S A;  1KUJ A;  4PIK A;  3O44 A;  5J4X A;  2NU5 A;  1UGY C;  1JOT A;  4AKC A;  3VZF A;  5AV7 A;  1XXR A;  1XEZ A;  4MQ0 A;  2HYQ A;  5EXG A;  3LL0 A;  3WOC A;  3VZG A;  3LKY A;  1WS5 C;  4DDN A;  2BN0 A;  1M26 A;  3LM1 A;  4PIT A;  3MIU A;  4WOG A;  1J4U A;  3LLY A;  1OUW A;  4R6P A;  3VY6 A;  4AKD A;  4GX7 A;  2GTY A;  1WS4 C;  4PIU A;  1XXQ A;  4PIF A;  4AKB A;  3AQG A;  1UGW A;  5J51 A;  1ZGR A;  2HYR A;  1UH0 A;  3LL1 A;  4R6Q A;  1UGY A;  5BN6 E;  3WOB A;  1PXD A;  1VBO A;  1JAC A;  2JZ4 A;  1C3K A;  1UH1 A;  3LLZ A;  1C3M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1WS4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations