1WS5 | Genus

Total Genus 29

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHVSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
total genus	29
structure length	133
sequence length	133
chains with identical sequence	G
ec nomenclature
pdb deposition date	2004-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1ws5A00

3R52A 3O44A 4R6NA 2GUCA 4PIKA 2GUEA 4MQ0A 1OUWA 1TOQA 3LL1A 3LKYA 2GUXA 1VBPA 2GUDA 3WOCA 2HYQA 4R6QA 4R6PA 2NU5A 1ZGRA 4AKDA 3MIUA 1XEZA 1JOTA 4WOGA 2JZ4A 5JM1A 3VZFA 1KU8A 1C3MA 4GX7A 1XXRA 1WS4C 1C3NA 5J4XA 1J4TA 1UGWA 5EXGA 5J51A 3LL2A 3MIVA 2BN0A 1J4SA 1UGYC 1WS4A 1TP8A 1WS5C 4PIFA 1VBOA 3WOBA 2BMZA 3VY7A 1KUJA 3AQGA 1UH1A 1XXQA 2NUOA 1JACA 3R51A 3LLZA 1UH0A 4R6RA 1PXDA 2HYRA 3P8SA 1M26A 1WS5A 5J4TA 2BMYA 4AKCA 3R50A 1UGXA 1ZGSA 3LM1A 3LL0A 4AKBA 5AV7A 4PIUA 1C3KA 5BN6E 5J50A 1X1VA 1J4UA 4R6OA 3VY6A 4PITA 2GTYA 3APAA 1UGYA 3MITA 3VZGA 4DDNA 1UGWC 3LLYA 3VZEA 4AK4A
chains in the Genus database with same CATH superfamily

3R52A 3O44A 4R6NA 2GUCA 4PIKA 2GUEA 4MQ0A 1OUWA 1TOQA 1I5PA 3LL1A 3LKYA 2GUXA 1W99A 1VBPA 2GUDA 3WOCA 2HYQA 4R6QA 4R6PA 2NU5A 1ZGRA 4AKDA 4D8MA 3MIUA 1XEZA 1JOTA 4WOGA 4QX2A 2JZ4A 1DLCA 5JM1A 3VZFA 1KU8A 1C3MA 4GX7A 1XXRA 1WS4C 1C3NA 5J4XA 4QX3A 4MOAA 1J4TA 1UGWA 5EXGA 5J51A 2QP2A 3LL2A 1JI6A 3MIVA 2BN0A 4ARYA 1J4SA 1UGYC 1WS4A 1TP8A 1WS5C 4PIFA 1VBOA 3EB7A 3WOBA 2BMZA 3VY7A 1KUJA 3AQGA 1UH1A 1XXQA 2NUOA 1JACA 3R51A 3LLZA 1UH0A 4R6RA 1PXDA 3TOWA 2HYRA 3P8SA 1M26A 1WS5A 5J4TA 2BMYA 4AKCA 3R50A 1UGXA 1ZGSA 3LM1A 3LL0A 4AKBA 5AV7A 4PIUA 1C3KA 5BN6E 5J50A 2C9KA 1X1VA 1VMOA 1J4UA 4R6OA 3VY6A 4PITA 2GTYA 3APAA 4W8JA 4QX0A 3MITA 1UGYA 3VZGA 4DDNA 4ARXA 4QX1A 1UGWC 3LLYA 3VZEA 1CIYA 4AK4A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3R52 A;  3O44 A;  4R6N A;  2GUC A;  4PIK A;  2GUE A;  4MQ0 A;  1OUW A;  1TOQ A;  3LL1 A;  3LKY A;  2GUX A;  1VBP A;  2GUD A;  3WOC A;  2HYQ A;  4R6Q A;  4R6P A;  2NU5 A;  1ZGR A;  4AKD A;  3MIU A;  1XEZ A;  1JOT A;  4WOG A;  2JZ4 A;  5JM1 A;  3VZF A;  1KU8 A;  1C3M A;  4GX7 A;  1XXR A;  1WS4 C;  1C3N A;  5J4X A;  1J4T A;  1UGW A;  5EXG A;  5J51 A;  3LL2 A;  3MIV A;  2BN0 A;  1J4S A;  1UGY C;  1WS4 A;  1TP8 A;  1WS5 C;  4PIF A;  1VBO A;  3WOB A;  2BMZ A;  3VY7 A;  1KUJ A;  3AQG A;  1UH1 A;  1XXQ A;  2NUO A;  1JAC A;  3R51 A;  3LLZ A;  1UH0 A;  4R6R A;  1PXD A;  2HYR A;  3P8S A;  1M26 A;  1WS5 A;  5J4T A;  2BMY A;  4AKC A;  3R50 A;  1UGX A;  1ZGS A;  3LM1 A;  3LL0 A;  4AKB A;  5AV7 A;  4PIU A;  1C3K A;  5BN6 E;  5J50 A;  1X1V A;  1J4U A;  4R6O A;  3VY6 A;  4PIT A;  2GTY A;  3APA A;  1UGY A;  3MIT A;  3VZG A;  4DDN A;  1UGW C;  3LLY A;  3VZE A;  4AK4 A; 
#chains in the Genus database with same CATH topology
 3R52 A;  3O44 A;  4R6N A;  2GUC A;  4PIK A;  2GUE A;  4MQ0 A;  1OUW A;  1TOQ A;  1I5P A;  3LL1 A;  3LKY A;  2GUX A;  1W99 A;  1VBP A;  2GUD A;  3WOC A;  2HYQ A;  4R6Q A;  4R6P A;  2NU5 A;  1ZGR A;  4AKD A;  4D8M A;  3MIU A;  1XEZ A;  1JOT A;  4WOG A;  4QX2 A;  2JZ4 A;  1DLC A;  5JM1 A;  3VZF A;  1KU8 A;  1C3M A;  4GX7 A;  1XXR A;  1WS4 C;  1C3N A;  5J4X A;  4QX3 A;  4MOA A;  1J4T A;  1UGW A;  5EXG A;  5J51 A;  2QP2 A;  3LL2 A;  1JI6 A;  3MIV A;  2BN0 A;  4ARY A;  1J4S A;  1UGY C;  1WS4 A;  1TP8 A;  1WS5 C;  4PIF A;  1VBO A;  3EB7 A;  3WOB A;  2BMZ A;  3VY7 A;  1KUJ A;  3AQG A;  1UH1 A;  1XXQ A;  2NUO A;  1JAC A;  3R51 A;  3LLZ A;  1UH0 A;  4R6R A;  1PXD A;  3TOW A;  2HYR A;  3P8S A;  1M26 A;  1WS5 A;  5J4T A;  2BMY A;  4AKC A;  3R50 A;  1UGX A;  1ZGS A;  3LM1 A;  3LL0 A;  4AKB A;  5AV7 A;  4PIU A;  1C3K A;  5BN6 E;  5J50 A;  2C9K A;  1X1V A;  1VMO A;  1J4U A;  4R6O A;  3VY6 A;  4PIT A;  2GTY A;  3APA A;  4W8J A;  4QX0 A;  3MIT A;  1UGY A;  3VZG A;  4DDN A;  4ARX A;  4QX1 A;  1UGW C;  3LLY A;  3VZE A;  1CIY A;  4AK4 A; 
#chains in the Genus database with same CATH homology
 3R52 A;  3O44 A;  4R6N A;  2GUC A;  4PIK A;  2GUE A;  4MQ0 A;  1OUW A;  1TOQ A;  3LL1 A;  3LKY A;  2GUX A;  1VBP A;  2GUD A;  3WOC A;  2HYQ A;  4R6Q A;  4R6P A;  2NU5 A;  1ZGR A;  4AKD A;  3MIU A;  1XEZ A;  1JOT A;  4WOG A;  2JZ4 A;  5JM1 A;  3VZF A;  1KU8 A;  1C3M A;  4GX7 A;  1XXR A;  1WS4 C;  1C3N A;  5J4X A;  1J4T A;  1UGW A;  5EXG A;  5J51 A;  3LL2 A;  3MIV A;  2BN0 A;  1J4S A;  1UGY C;  1WS4 A;  1TP8 A;  1WS5 C;  4PIF A;  1VBO A;  3WOB A;  2BMZ A;  3VY7 A;  1KUJ A;  3AQG A;  1UH1 A;  1XXQ A;  2NUO A;  1JAC A;  3R51 A;  3LLZ A;  1UH0 A;  4R6R A;  1PXD A;  2HYR A;  3P8S A;  1M26 A;  1WS5 A;  5J4T A;  2BMY A;  4AKC A;  3R50 A;  1UGX A;  1ZGS A;  3LM1 A;  3LL0 A;  4AKB A;  5AV7 A;  4PIU A;  1C3K A;  5BN6 E;  5J50 A;  1X1V A;  1J4U A;  4R6O A;  3VY6 A;  4PIT A;  2GTY A;  3APA A;  1UGY A;  3MIT A;  3VZG A;  4DDN A;  1UGW C;  3LLY A;  3VZE A;  4AK4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1WS5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations