1WS5C

Crystal structure of jacalin-me-alpha-mannose complex: promiscuity vs specificity
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 32
structure length 133
sequence length 133
chains with identical sequence E
ec nomenclature
pdb deposition date 2004-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ws5C00
1UGXA 3LL1A 5AV7A 2BMYA 3APAA 4AKDA 1XXQA 5EXGA 1UGWC 1X1VA 2GUDA 1XEZA 4AKCA 5J50A 3WOBA 3VZEA 1J4TA 2NUOA 4R6OA 1WS5C 1WS4A 1PXDA 3MIUA 2JZ4A 1C3NA 3LM1A 4AKBA 3LLZA 1C3KA 3MIVA 4DDNA 3VY7A 1XXRA 4MQ0A 1UGWA 4PITA 4WOGA 4R6NA 4PIKA 5JM1A 3P8SA 1UGYC 5J4XA 1J4SA 2BN0A 1WS5A 1VBOA 2NU5A 5J51A 1UGYA 3WOCA 5BN6E 1M26A 3AQGA 2GUXA 2HYQA 5J4TA 4R6QA 3R50A 4R6PA 2HYRA 1KU8A 3O44A 4PIFA 3LKYA 4R6RA 3R52A 3VZFA 1VBPA 1UH0A 1ZGRA 2GUCA 2GTYA 1ZGSA 3VZGA 4AK4A 1OUWA 3LLYA 1KUJA 1JOTA 2BMZA 3LL0A 1UH1A 1C3MA 1TP8A 1TOQA 3VY6A 2GUEA 1WS4C 3LL2A 3R51A 4PIUA 1J4UA 3MITA 1JACA 4GX7A
chains in the Genus database with same CATH superfamily
1UGXA 3LL1A 5AV7A 2BMYA 3APAA 4ARYA 4AKDA 1XXQA 5EXGA 1UGWC 1X1VA 2GUDA 1XEZA 4AKCA 5J50A 3WOBA 3VZEA 4QX2A 1J4TA 2NUOA 4R6OA 1WS5C 1WS4A 1PXDA 3MIUA 3TOWA 2JZ4A 1C3NA 3LM1A 4AKBA 3LLZA 1C3KA 3MIVA 4DDNA 4QX0A 3VY7A 1XXRA 4QX3A 4MQ0A 1UGWA 4PITA 4WOGA 4R6NA 4PIKA 5JM1A 3P8SA 1UGYC 5J4XA 1J4SA 2BN0A 1WS5A 1VBOA 2NU5A 5J51A 1UGYA 3WOCA 5BN6E 1M26A 3AQGA 2GUXA 2HYQA 1W99A 5J4TA 4R6QA 3R50A 4R6PA 2C9KA 2HYRA 1KU8A 3O44A 4PIFA 3LKYA 4R6RA 3R52A 3VZFA 1CIYA 1VMOA 1VBPA 1UH0A 1ZGRA 3EB7A 4W8JA 4D8MA 2GUCA 2GTYA 1DLCA 1ZGSA 1JI6A 3VZGA 4AK4A 1OUWA 3LLYA 1KUJA 4ARXA 1JOTA 2BMZA 3LL0A 1I5PA 1UH1A 1C3MA 4MOAA 1TP8A 1TOQA 3VY6A 2GUEA 1WS4C 2QP2A 3LL2A 3R51A 4PIUA 1J4UA 4QX1A 3MITA 1JACA 4GX7A
chains in the Genus database with same CATH topology
1UGXA 3LL1A 5AV7A 2BMYA 3APAA 4AKDA 1XXQA 5EXGA 1UGWC 1X1VA 2GUDA 1XEZA 4AKCA 5J50A 3WOBA 3VZEA 1J4TA 2NUOA 4R6OA 1WS5C 1WS4A 1PXDA 3MIUA 2JZ4A 1C3NA 3LM1A 4AKBA 3LLZA 1C3KA 3MIVA 4DDNA 3VY7A 1XXRA 4MQ0A 1UGWA 4PITA 4WOGA 4R6NA 4PIKA 5JM1A 3P8SA 1UGYC 5J4XA 1J4SA 2BN0A 1WS5A 1VBOA 2NU5A 5J51A 1UGYA 3WOCA 5BN6E 1M26A 3AQGA 2GUXA 2HYQA 5J4TA 4R6QA 3R50A 4R6PA 2HYRA 1KU8A 3O44A 4PIFA 3LKYA 4R6RA 3R52A 3VZFA 1VBPA 1UH0A 1ZGRA 2GUCA 2GTYA 1ZGSA 3VZGA 4AK4A 1OUWA 3LLYA 1KUJA 1JOTA 2BMZA 3LL0A 1UH1A 1C3MA 1TP8A 1TOQA 3VY6A 2GUEA 1WS4C 3LL2A 3R51A 4PIUA 1J4UA 3MITA 1JACA 4GX7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGX A;  3LL1 A;  5AV7 A;  2BMY A;  3APA A;  4AKD A;  1XXQ A;  5EXG A;  1UGW C;  1X1V A;  2GUD A;  1XEZ A;  4AKC A;  5J50 A;  3WOB A;  3VZE A;  1J4T A;  2NUO A;  4R6O A;  1WS5 C;  1WS4 A;  1PXD A;  3MIU A;  2JZ4 A;  1C3N A;  3LM1 A;  4AKB A;  3LLZ A;  1C3K A;  3MIV A;  4DDN A;  3VY7 A;  1XXR A;  4MQ0 A;  1UGW A;  4PIT A;  4WOG A;  4R6N A;  4PIK A;  5JM1 A;  3P8S A;  1UGY C;  5J4X A;  1J4S A;  2BN0 A;  1WS5 A;  1VBO A;  2NU5 A;  5J51 A;  1UGY A;  3WOC A;  5BN6 E;  1M26 A;  3AQG A;  2GUX A;  2HYQ A;  5J4T A;  4R6Q A;  3R50 A;  4R6P A;  2HYR A;  1KU8 A;  3O44 A;  4PIF A;  3LKY A;  4R6R A;  3R52 A;  3VZF A;  1VBP A;  1UH0 A;  1ZGR A;  2GUC A;  2GTY A;  1ZGS A;  3VZG A;  4AK4 A;  1OUW A;  3LLY A;  1KUJ A;  1JOT A;  2BMZ A;  3LL0 A;  1UH1 A;  1C3M A;  1TP8 A;  1TOQ A;  3VY6 A;  2GUE A;  1WS4 C;  3LL2 A;  3R51 A;  4PIU A;  1J4U A;  3MIT A;  1JAC A;  4GX7 A; 
#chains in the Genus database with same CATH topology
 1UGX A;  3LL1 A;  5AV7 A;  2BMY A;  3APA A;  4ARY A;  4AKD A;  1XXQ A;  5EXG A;  1UGW C;  1X1V A;  2GUD A;  1XEZ A;  4AKC A;  5J50 A;  3WOB A;  3VZE A;  4QX2 A;  1J4T A;  2NUO A;  4R6O A;  1WS5 C;  1WS4 A;  1PXD A;  3MIU A;  3TOW A;  2JZ4 A;  1C3N A;  3LM1 A;  4AKB A;  3LLZ A;  1C3K A;  3MIV A;  4DDN A;  4QX0 A;  3VY7 A;  1XXR A;  4QX3 A;  4MQ0 A;  1UGW A;  4PIT A;  4WOG A;  4R6N A;  4PIK A;  5JM1 A;  3P8S A;  1UGY C;  5J4X A;  1J4S A;  2BN0 A;  1WS5 A;  1VBO A;  2NU5 A;  5J51 A;  1UGY A;  3WOC A;  5BN6 E;  1M26 A;  3AQG A;  2GUX A;  2HYQ A;  1W99 A;  5J4T A;  4R6Q A;  3R50 A;  4R6P A;  2C9K A;  2HYR A;  1KU8 A;  3O44 A;  4PIF A;  3LKY A;  4R6R A;  3R52 A;  3VZF A;  1CIY A;  1VMO A;  1VBP A;  1UH0 A;  1ZGR A;  3EB7 A;  4W8J A;  4D8M A;  2GUC A;  2GTY A;  1DLC A;  1ZGS A;  1JI6 A;  3VZG A;  4AK4 A;  1OUW A;  3LLY A;  1KUJ A;  4ARX A;  1JOT A;  2BMZ A;  3LL0 A;  1I5P A;  1UH1 A;  1C3M A;  4MOA A;  1TP8 A;  1TOQ A;  3VY6 A;  2GUE A;  1WS4 C;  2QP2 A;  3LL2 A;  3R51 A;  4PIU A;  1J4U A;  4QX1 A;  3MIT A;  1JAC A;  4GX7 A; 
#chains in the Genus database with same CATH homology
 1UGX A;  3LL1 A;  5AV7 A;  2BMY A;  3APA A;  4AKD A;  1XXQ A;  5EXG A;  1UGW C;  1X1V A;  2GUD A;  1XEZ A;  4AKC A;  5J50 A;  3WOB A;  3VZE A;  1J4T A;  2NUO A;  4R6O A;  1WS5 C;  1WS4 A;  1PXD A;  3MIU A;  2JZ4 A;  1C3N A;  3LM1 A;  4AKB A;  3LLZ A;  1C3K A;  3MIV A;  4DDN A;  3VY7 A;  1XXR A;  4MQ0 A;  1UGW A;  4PIT A;  4WOG A;  4R6N A;  4PIK A;  5JM1 A;  3P8S A;  1UGY C;  5J4X A;  1J4S A;  2BN0 A;  1WS5 A;  1VBO A;  2NU5 A;  5J51 A;  1UGY A;  3WOC A;  5BN6 E;  1M26 A;  3AQG A;  2GUX A;  2HYQ A;  5J4T A;  4R6Q A;  3R50 A;  4R6P A;  2HYR A;  1KU8 A;  3O44 A;  4PIF A;  3LKY A;  4R6R A;  3R52 A;  3VZF A;  1VBP A;  1UH0 A;  1ZGR A;  2GUC A;  2GTY A;  1ZGS A;  3VZG A;  4AK4 A;  1OUW A;  3LLY A;  1KUJ A;  1JOT A;  2BMZ A;  3LL0 A;  1UH1 A;  1C3M A;  1TP8 A;  1TOQ A;  3VY6 A;  2GUE A;  1WS4 C;  3LL2 A;  3R51 A;  4PIU A;  1J4U A;  3MIT A;  1JAC A;  4GX7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...