1WS5C

Crystal structure of jacalin-me-alpha-mannose complex: promiscuity vs specificity
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV1 (33-36)S2 (11-19)TI1 (20-23)S7 (78-88)S3 (25-34)TVIa1 (59-62)TIV2 (60-63)S8 (92-97)TI2 (88-91)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV3 (74-77)TIV4 (120-123)S10 (112-120)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 32
structure length 133
sequence length 133
chains with identical sequence E
ec nomenclature
pdb deposition date 2004-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ws5C00
4R6NA 3VY7A 3VZFA 1JOTA 1C3NA 1XXRA 1UGWA 3AQGA 5J50A 3LL1A 4PIFA 4GX7A 1M26A 3R51A 3R52A 1OUWA 2GTYA 3R50A 1WS5A 4MQ0A 1VBPA 4DDNA 4WOGA 3LLYA 1UGYA 1KUJA 4PIUA 3MITA 1UH1A 4R6OA 1UGXA 1JACA 1ZGRA 1UGWC 3LL2A 1ZGSA 1PXDA 1TOQA 1KU8A 3WOBA 3O44A 3LM1A 2HYRA 3P8SA 1WS5C 3WOCA 2BMZA 1C3KA 1X1VA 3LLZA 1UGYC 4R6QA 5JM1A 1TP8A 3MIVA 2HYQA 1WS4A 3VZGA 4PITA 3VZEA 2GUDA 2NUOA 4AKBA 5BN6E 5AV7A 3LKYA 1J4TA 5J51A 3LL0A 1XXQA 1J4SA 2GUCA 1J4UA 1VBOA 4R6RA 1XEZA 3VY6A 3MIUA 4R6PA 1WS4C 4AKDA 2JZ4A 2GUEA 4AKCA 5EXGA 1C3MA 1UH0A 4PIKA 2BMYA 2NU5A 2BN0A 3APAA 2GUXA 5J4XA 4AK4A 5J4TA
chains in the Genus database with same CATH superfamily
4R6NA 1DLCA 3TOWA 1I5PA 3VY7A 3VZFA 1JOTA 1C3NA 1XXRA 1UGWA 3AQGA 5J50A 3LL1A 4PIFA 4GX7A 1M26A 3R51A 3R52A 1OUWA 3EB7A 2GTYA 3R50A 1WS5A 4MQ0A 1VBPA 1JI6A 4D8MA 4DDNA 4WOGA 3LLYA 1UGYA 1KUJA 4PIUA 3MITA 1UH1A 4MOAA 4R6OA 1UGXA 1JACA 1ZGRA 1UGWC 4QX0A 3LL2A 1ZGSA 1PXDA 1TOQA 1KU8A 3WOBA 3O44A 3LM1A 2HYRA 3P8SA 1WS5C 3WOCA 2BMZA 1C3KA 4W8JA 1X1VA 3LLZA 1UGYC 4R6QA 5JM1A 1TP8A 3MIVA 2HYQA 4QX2A 4ARYA 1WS4A 3VZGA 4PITA 3VZEA 1W99A 2GUDA 2NUOA 4AKBA 5BN6E 4QX1A 5AV7A 3LKYA 1VMOA 1J4TA 4QX3A 5J51A 3LL0A 1XXQA 1J4SA 2GUCA 1J4UA 1VBOA 4R6RA 1XEZA 3VY6A 3MIUA 4R6PA 1WS4C 4AKDA 2JZ4A 1CIYA 2GUEA 4AKCA 5EXGA 1C3MA 1UH0A 4PIKA 2BMYA 2NU5A 2BN0A 2QP2A 4ARXA 3APAA 2C9KA 2GUXA 5J4XA 4AK4A 5J4TA
chains in the Genus database with same CATH topology
4R6NA 3VY7A 3VZFA 1JOTA 1C3NA 1XXRA 1UGWA 3AQGA 5J50A 3LL1A 4PIFA 4GX7A 1M26A 3R51A 3R52A 1OUWA 2GTYA 3R50A 1WS5A 4MQ0A 1VBPA 4DDNA 4WOGA 3LLYA 1UGYA 1KUJA 4PIUA 3MITA 1UH1A 4R6OA 1UGXA 1JACA 1ZGRA 1UGWC 3LL2A 1ZGSA 1PXDA 1TOQA 1KU8A 3WOBA 3O44A 3LM1A 2HYRA 3P8SA 1WS5C 3WOCA 2BMZA 1C3KA 1X1VA 3LLZA 1UGYC 4R6QA 5JM1A 1TP8A 3MIVA 2HYQA 1WS4A 3VZGA 4PITA 3VZEA 2GUDA 2NUOA 4AKBA 5BN6E 5AV7A 3LKYA 1J4TA 5J51A 3LL0A 1XXQA 1J4SA 2GUCA 1J4UA 1VBOA 4R6RA 1XEZA 3VY6A 3MIUA 4R6PA 1WS4C 4AKDA 2JZ4A 2GUEA 4AKCA 5EXGA 1C3MA 1UH0A 4PIKA 2BMYA 2NU5A 2BN0A 3APAA 2GUXA 5J4XA 4AK4A 5J4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R6N A;  3VY7 A;  3VZF A;  1JOT A;  1C3N A;  1XXR A;  1UGW A;  3AQG A;  5J50 A;  3LL1 A;  4PIF A;  4GX7 A;  1M26 A;  3R51 A;  3R52 A;  1OUW A;  2GTY A;  3R50 A;  1WS5 A;  4MQ0 A;  1VBP A;  4DDN A;  4WOG A;  3LLY A;  1UGY A;  1KUJ A;  4PIU A;  3MIT A;  1UH1 A;  4R6O A;  1UGX A;  1JAC A;  1ZGR A;  1UGW C;  3LL2 A;  1ZGS A;  1PXD A;  1TOQ A;  1KU8 A;  3WOB A;  3O44 A;  3LM1 A;  2HYR A;  3P8S A;  1WS5 C;  3WOC A;  2BMZ A;  1C3K A;  1X1V A;  3LLZ A;  1UGY C;  4R6Q A;  5JM1 A;  1TP8 A;  3MIV A;  2HYQ A;  1WS4 A;  3VZG A;  4PIT A;  3VZE A;  2GUD A;  2NUO A;  4AKB A;  5BN6 E;  5AV7 A;  3LKY A;  1J4T A;  5J51 A;  3LL0 A;  1XXQ A;  1J4S A;  2GUC A;  1J4U A;  1VBO A;  4R6R A;  1XEZ A;  3VY6 A;  3MIU A;  4R6P A;  1WS4 C;  4AKD A;  2JZ4 A;  2GUE A;  4AKC A;  5EXG A;  1C3M A;  1UH0 A;  4PIK A;  2BMY A;  2NU5 A;  2BN0 A;  3APA A;  2GUX A;  5J4X A;  4AK4 A;  5J4T A; 
#chains in the Genus database with same CATH topology
 4R6N A;  1DLC A;  3TOW A;  1I5P A;  3VY7 A;  3VZF A;  1JOT A;  1C3N A;  1XXR A;  1UGW A;  3AQG A;  5J50 A;  3LL1 A;  4PIF A;  4GX7 A;  1M26 A;  3R51 A;  3R52 A;  1OUW A;  3EB7 A;  2GTY A;  3R50 A;  1WS5 A;  4MQ0 A;  1VBP A;  1JI6 A;  4D8M A;  4DDN A;  4WOG A;  3LLY A;  1UGY A;  1KUJ A;  4PIU A;  3MIT A;  1UH1 A;  4MOA A;  4R6O A;  1UGX A;  1JAC A;  1ZGR A;  1UGW C;  4QX0 A;  3LL2 A;  1ZGS A;  1PXD A;  1TOQ A;  1KU8 A;  3WOB A;  3O44 A;  3LM1 A;  2HYR A;  3P8S A;  1WS5 C;  3WOC A;  2BMZ A;  1C3K A;  4W8J A;  1X1V A;  3LLZ A;  1UGY C;  4R6Q A;  5JM1 A;  1TP8 A;  3MIV A;  2HYQ A;  4QX2 A;  4ARY A;  1WS4 A;  3VZG A;  4PIT A;  3VZE A;  1W99 A;  2GUD A;  2NUO A;  4AKB A;  5BN6 E;  4QX1 A;  5AV7 A;  3LKY A;  1VMO A;  1J4T A;  4QX3 A;  5J51 A;  3LL0 A;  1XXQ A;  1J4S A;  2GUC A;  1J4U A;  1VBO A;  4R6R A;  1XEZ A;  3VY6 A;  3MIU A;  4R6P A;  1WS4 C;  4AKD A;  2JZ4 A;  1CIY A;  2GUE A;  4AKC A;  5EXG A;  1C3M A;  1UH0 A;  4PIK A;  2BMY A;  2NU5 A;  2BN0 A;  2QP2 A;  4ARX A;  3APA A;  2C9K A;  2GUX A;  5J4X A;  4AK4 A;  5J4T A; 
#chains in the Genus database with same CATH homology
 4R6N A;  3VY7 A;  3VZF A;  1JOT A;  1C3N A;  1XXR A;  1UGW A;  3AQG A;  5J50 A;  3LL1 A;  4PIF A;  4GX7 A;  1M26 A;  3R51 A;  3R52 A;  1OUW A;  2GTY A;  3R50 A;  1WS5 A;  4MQ0 A;  1VBP A;  4DDN A;  4WOG A;  3LLY A;  1UGY A;  1KUJ A;  4PIU A;  3MIT A;  1UH1 A;  4R6O A;  1UGX A;  1JAC A;  1ZGR A;  1UGW C;  3LL2 A;  1ZGS A;  1PXD A;  1TOQ A;  1KU8 A;  3WOB A;  3O44 A;  3LM1 A;  2HYR A;  3P8S A;  1WS5 C;  3WOC A;  2BMZ A;  1C3K A;  1X1V A;  3LLZ A;  1UGY C;  4R6Q A;  5JM1 A;  1TP8 A;  3MIV A;  2HYQ A;  1WS4 A;  3VZG A;  4PIT A;  3VZE A;  2GUD A;  2NUO A;  4AKB A;  5BN6 E;  5AV7 A;  3LKY A;  1J4T A;  5J51 A;  3LL0 A;  1XXQ A;  1J4S A;  2GUC A;  1J4U A;  1VBO A;  4R6R A;  1XEZ A;  3VY6 A;  3MIU A;  4R6P A;  1WS4 C;  4AKD A;  2JZ4 A;  2GUE A;  4AKC A;  5EXG A;  1C3M A;  1UH0 A;  4PIK A;  2BMY A;  2NU5 A;  2BN0 A;  3APA A;  2GUX A;  5J4X A;  4AK4 A;  5J4T A; 
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