1WS5C

Crystal structure of jacalin-me-alpha-mannose complex: promiscuity vs specificity
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 32
structure length 133
sequence length 133
chains with identical sequence E
ec nomenclature
pdb deposition date 2004-10-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1ws5C00
3LL1A 1C3NA 1UGWC 1JOTA 1UGYA 1X1VA 2GUXA 2BMZA 3MIUA 1ZGSA 3VY6A 4AK4A 1WS5C 3VY7A 4R6QA 5AV7A 5J51A 3LL0A 1VBOA 3MITA 2GUCA 3O44A 2NU5A 3MIVA 3LM1A 1XEZA 1J4UA 2HYQA 4PIUA 3LL2A 5EXGA 3R51A 3WOCA 4R6NA 4GX7A 2GTYA 3LKYA 1XXRA 4PIKA 3VZFA 3VZGA 4R6PA 4R6RA 1C3KA 3WOBA 2HYRA 1WS4A 1ZGRA 1KUJA 3AQGA 1KU8A 4AKCA 3LLYA 3APAA 3R52A 3R50A 2GUEA 1M26A 4AKDA 2GUDA 2BMYA 4DDNA 5JM1A 1WS5A 1PXDA 5J4TA 2BN0A 1J4SA 4WOGA 4PITA 1UGXA 1UGYC 1VBPA 2JZ4A 1UGWA 4AKBA 3P8SA 1WS4C 4R6OA 1UH1A 1TP8A 1J4TA 3LLZA 3VZEA 2NUOA 4PIFA 5J4XA 1JACA 1OUWA 1UH0A 1TOQA 1XXQA 4MQ0A 5BN6E 1C3MA 5J50A
chains in the Genus database with same CATH superfamily
3LL1A 1C3NA 1UGWC 1JOTA 1UGYA 1X1VA 2GUXA 2BMZA 3MIUA 1ZGSA 3VY6A 1W99A 4D8MA 4AK4A 1WS5C 3VY7A 4R6QA 5AV7A 5J51A 1JI6A 1VBOA 3LL0A 3MITA 2GUCA 3O44A 2NU5A 3MIVA 3LM1A 1XEZA 1J4UA 1DLCA 2HYQA 4PIUA 3LL2A 5EXGA 3R51A 3WOCA 4R6NA 4MOAA 4GX7A 2GTYA 4QX1A 3LKYA 1XXRA 4PIKA 1VMOA 3VZFA 3VZGA 4R6PA 4R6RA 1C3KA 3WOBA 2HYRA 1WS4A 1ZGRA 1KUJA 1I5PA 3AQGA 1KU8A 4ARYA 4AKCA 3LLYA 3APAA 3R52A 3R50A 2GUEA 1M26A 4QX2A 4AKDA 2GUDA 2BMYA 4DDNA 5JM1A 1WS5A 1PXDA 5J4TA 2BN0A 1J4SA 4WOGA 4PITA 1UGXA 1UGYC 1VBPA 2JZ4A 1UGWA 4AKBA 3P8SA 4QX3A 3TOWA 1WS4C 4R6OA 1CIYA 1UH1A 1TP8A 1J4TA 3LLZA 3VZEA 4W8JA 2NUOA 4PIFA 5J4XA 1JACA 1OUWA 1TOQA 1UH0A 1XXQA 2QP2A 4MQ0A 5BN6E 4ARXA 1C3MA 4QX0A 2C9KA 3EB7A 5J50A
chains in the Genus database with same CATH topology
3LL1A 1C3NA 1UGWC 1JOTA 1UGYA 1X1VA 2GUXA 2BMZA 3MIUA 1ZGSA 3VY6A 4AK4A 1WS5C 3VY7A 4R6QA 5AV7A 5J51A 3LL0A 1VBOA 3MITA 2GUCA 3O44A 2NU5A 3MIVA 3LM1A 1XEZA 1J4UA 2HYQA 4PIUA 3LL2A 5EXGA 3R51A 3WOCA 4R6NA 4GX7A 2GTYA 3LKYA 1XXRA 4PIKA 3VZFA 3VZGA 4R6PA 4R6RA 1C3KA 3WOBA 2HYRA 1WS4A 1ZGRA 1KUJA 3AQGA 1KU8A 4AKCA 3LLYA 3APAA 3R52A 3R50A 2GUEA 1M26A 4AKDA 2GUDA 2BMYA 4DDNA 5JM1A 1WS5A 1PXDA 5J4TA 2BN0A 1J4SA 4WOGA 4PITA 1UGXA 1UGYC 1VBPA 2JZ4A 1UGWA 4AKBA 3P8SA 1WS4C 4R6OA 1UH1A 1TP8A 1J4TA 3LLZA 3VZEA 2NUOA 4PIFA 5J4XA 1JACA 1OUWA 1UH0A 1TOQA 1XXQA 4MQ0A 5BN6E 1C3MA 5J50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL1 A;  1C3N A;  1UGW C;  1JOT A;  1UGY A;  1X1V A;  2GUX A;  2BMZ A;  3MIU A;  1ZGS A;  3VY6 A;  4AK4 A;  1WS5 C;  3VY7 A;  4R6Q A;  5AV7 A;  5J51 A;  3LL0 A;  1VBO A;  3MIT A;  2GUC A;  3O44 A;  2NU5 A;  3MIV A;  3LM1 A;  1XEZ A;  1J4U A;  2HYQ A;  4PIU A;  3LL2 A;  5EXG A;  3R51 A;  3WOC A;  4R6N A;  4GX7 A;  2GTY A;  3LKY A;  1XXR A;  4PIK A;  3VZF A;  3VZG A;  4R6P A;  4R6R A;  1C3K A;  3WOB A;  2HYR A;  1WS4 A;  1ZGR A;  1KUJ A;  3AQG A;  1KU8 A;  4AKC A;  3LLY A;  3APA A;  3R52 A;  3R50 A;  2GUE A;  1M26 A;  4AKD A;  2GUD A;  2BMY A;  4DDN A;  5JM1 A;  1WS5 A;  1PXD A;  5J4T A;  2BN0 A;  1J4S A;  4WOG A;  4PIT A;  1UGX A;  1UGY C;  1VBP A;  2JZ4 A;  1UGW A;  4AKB A;  3P8S A;  1WS4 C;  4R6O A;  1UH1 A;  1TP8 A;  1J4T A;  3LLZ A;  3VZE A;  2NUO A;  4PIF A;  5J4X A;  1JAC A;  1OUW A;  1UH0 A;  1TOQ A;  1XXQ A;  4MQ0 A;  5BN6 E;  1C3M A;  5J50 A; 
#chains in the Genus database with same CATH topology
 3LL1 A;  1C3N A;  1UGW C;  1JOT A;  1UGY A;  1X1V A;  2GUX A;  2BMZ A;  3MIU A;  1ZGS A;  3VY6 A;  1W99 A;  4D8M A;  4AK4 A;  1WS5 C;  3VY7 A;  4R6Q A;  5AV7 A;  5J51 A;  1JI6 A;  1VBO A;  3LL0 A;  3MIT A;  2GUC A;  3O44 A;  2NU5 A;  3MIV A;  3LM1 A;  1XEZ A;  1J4U A;  1DLC A;  2HYQ A;  4PIU A;  3LL2 A;  5EXG A;  3R51 A;  3WOC A;  4R6N A;  4MOA A;  4GX7 A;  2GTY A;  4QX1 A;  3LKY A;  1XXR A;  4PIK A;  1VMO A;  3VZF A;  3VZG A;  4R6P A;  4R6R A;  1C3K A;  3WOB A;  2HYR A;  1WS4 A;  1ZGR A;  1KUJ A;  1I5P A;  3AQG A;  1KU8 A;  4ARY A;  4AKC A;  3LLY A;  3APA A;  3R52 A;  3R50 A;  2GUE A;  1M26 A;  4QX2 A;  4AKD A;  2GUD A;  2BMY A;  4DDN A;  5JM1 A;  1WS5 A;  1PXD A;  5J4T A;  2BN0 A;  1J4S A;  4WOG A;  4PIT A;  1UGX A;  1UGY C;  1VBP A;  2JZ4 A;  1UGW A;  4AKB A;  3P8S A;  4QX3 A;  3TOW A;  1WS4 C;  4R6O A;  1CIY A;  1UH1 A;  1TP8 A;  1J4T A;  3LLZ A;  3VZE A;  4W8J A;  2NUO A;  4PIF A;  5J4X A;  1JAC A;  1OUW A;  1TOQ A;  1UH0 A;  1XXQ A;  2QP2 A;  4MQ0 A;  5BN6 E;  4ARX A;  1C3M A;  4QX0 A;  2C9K A;  3EB7 A;  5J50 A; 
#chains in the Genus database with same CATH homology
 3LL1 A;  1C3N A;  1UGW C;  1JOT A;  1UGY A;  1X1V A;  2GUX A;  2BMZ A;  3MIU A;  1ZGS A;  3VY6 A;  4AK4 A;  1WS5 C;  3VY7 A;  4R6Q A;  5AV7 A;  5J51 A;  3LL0 A;  1VBO A;  3MIT A;  2GUC A;  3O44 A;  2NU5 A;  3MIV A;  3LM1 A;  1XEZ A;  1J4U A;  2HYQ A;  4PIU A;  3LL2 A;  5EXG A;  3R51 A;  3WOC A;  4R6N A;  4GX7 A;  2GTY A;  3LKY A;  1XXR A;  4PIK A;  3VZF A;  3VZG A;  4R6P A;  4R6R A;  1C3K A;  3WOB A;  2HYR A;  1WS4 A;  1ZGR A;  1KUJ A;  3AQG A;  1KU8 A;  4AKC A;  3LLY A;  3APA A;  3R52 A;  3R50 A;  2GUE A;  1M26 A;  4AKD A;  2GUD A;  2BMY A;  4DDN A;  5JM1 A;  1WS5 A;  1PXD A;  5J4T A;  2BN0 A;  1J4S A;  4WOG A;  4PIT A;  1UGX A;  1UGY C;  1VBP A;  2JZ4 A;  1UGW A;  4AKB A;  3P8S A;  1WS4 C;  4R6O A;  1UH1 A;  1TP8 A;  1J4T A;  3LLZ A;  3VZE A;  2NUO A;  4PIF A;  5J4X A;  1JAC A;  1OUW A;  1UH0 A;  1TOQ A;  1XXQ A;  4MQ0 A;  5BN6 E;  1C3M A;  5J50 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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