1WS5 | Genus

Total Genus 32

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	133
structure length	133
Chain Sequence	GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGQNHKSFITGFTPVKISLDFPSEYIMEVSGYTGNVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFNLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural basis for the energetics of jacalin-sugar interactions: promiscuity versus specificity pubmed doi rcsb
molecule keywords	Agglutinin alpha chain
molecule tags	Sugar binding protein
total genus	32
structure length	133
sequence length	133
chains with identical sequence	E
ec nomenclature
pdb deposition date	2004-10-31

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1ws5C00

2GTYA 1OUWA 1C3NA 1J4UA 3MITA 5J50A 4WOGA 3LL1A 4MQ0A 1WS5A 1ZGSA 3LL0A 3R51A 4PIFA 2HYRA 1UGYA 3VZEA 3LKYA 1UGWC 4PITA 3LLYA 1XXRA 4PIUA 2NU5A 1J4SA 4R6OA 3VY7A 3VY6A 1J4TA 4AKDA 1M26A 1UGWA 5BN6E 3WOCA 3AQGA 1JACA 1C3MA 4R6NA 1XXQA 1ZGRA 4R6QA 1TP8A 5EXGA 1VBPA 3R50A 3MIVA 2JZ4A 1WS4C 3LM1A 1JOTA 3MIUA 4AKBA 1KU8A 1KUJA 1UH1A 4R6PA 3WOBA 1C3KA 1WS4A 2BMYA 3VZFA 4PIKA 2GUXA 2GUDA 1WS5C 4DDNA 2NUOA 1TOQA 5J4TA 4R6RA 4AK4A 3O44A 2HYQA 1UGYC 2GUCA 5J4XA 2GUEA 1PXDA 3LL2A 3LLZA 1XEZA 3APAA 5J51A 5AV7A 4AKCA 3VZGA 2BMZA 1UGXA 5JM1A 1UH0A 1X1VA 2BN0A 3R52A 3P8SA 4GX7A 1VBOA
chains in the Genus database with same CATH superfamily

2GTYA 1OUWA 1C3NA 1J4UA 3MITA 5J50A 4WOGA 4ARXA 3LL1A 4MQ0A 1WS5A 1ZGSA 3LL0A 3R51A 4PIFA 2HYRA 1UGYA 3VZEA 3LKYA 1UGWC 4PITA 3LLYA 3EB7A 1XXRA 4PIUA 2NU5A 1J4SA 2QP2A 4R6OA 3VY7A 3VY6A 1J4TA 4AKDA 1M26A 1UGWA 4QX2A 4QX0A 3WOCA 5BN6E 3AQGA 1JACA 1C3MA 2C9KA 4ARYA 4R6NA 1XXQA 1ZGRA 4R6QA 1TP8A 5EXGA 1VBPA 3R50A 1CIYA 3MIVA 2JZ4A 1WS4C 3LM1A 1JOTA 4QX3A 3MIUA 4AKBA 1KU8A 1KUJA 1UH1A 4R6PA 1DLCA 1VMOA 3WOBA 1C3KA 1JI6A 1WS4A 2BMYA 3VZFA 4PIKA 2GUXA 2GUDA 1WS5C 4DDNA 2NUOA 1TOQA 5J4TA 1W99A 4R6RA 4AK4A 3O44A 2HYQA 1UGYC 1I5PA 2GUCA 4MOAA 5J4XA 2GUEA 1PXDA 4W8JA 3LL2A 3LLZA 4QX1A 1XEZA 3APAA 5J51A 3TOWA 5AV7A 4AKCA 3VZGA 4D8MA 2BMZA 1UGXA 5JM1A 1UH0A 1X1VA 2BN0A 3R52A 3P8SA 4GX7A 1VBOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2GTY A;  1OUW A;  1C3N A;  1J4U A;  3MIT A;  5J50 A;  4WOG A;  3LL1 A;  4MQ0 A;  1WS5 A;  1ZGS A;  3LL0 A;  3R51 A;  4PIF A;  2HYR A;  1UGY A;  3VZE A;  3LKY A;  1UGW C;  4PIT A;  3LLY A;  1XXR A;  4PIU A;  2NU5 A;  1J4S A;  4R6O A;  3VY7 A;  3VY6 A;  1J4T A;  4AKD A;  1M26 A;  1UGW A;  5BN6 E;  3WOC A;  3AQG A;  1JAC A;  1C3M A;  4R6N A;  1XXQ A;  1ZGR A;  4R6Q A;  1TP8 A;  5EXG A;  1VBP A;  3R50 A;  3MIV A;  2JZ4 A;  1WS4 C;  3LM1 A;  1JOT A;  3MIU A;  4AKB A;  1KU8 A;  1KUJ A;  1UH1 A;  4R6P A;  3WOB A;  1C3K A;  1WS4 A;  2BMY A;  3VZF A;  4PIK A;  2GUX A;  2GUD A;  1WS5 C;  4DDN A;  2NUO A;  1TOQ A;  5J4T A;  4R6R A;  4AK4 A;  3O44 A;  2HYQ A;  1UGY C;  2GUC A;  5J4X A;  2GUE A;  1PXD A;  3LL2 A;  3LLZ A;  1XEZ A;  3APA A;  5J51 A;  5AV7 A;  4AKC A;  3VZG A;  2BMZ A;  1UGX A;  5JM1 A;  1UH0 A;  1X1V A;  2BN0 A;  3R52 A;  3P8S A;  4GX7 A;  1VBO A; 
#chains in the Genus database with same CATH topology
 2GTY A;  1OUW A;  1C3N A;  1J4U A;  3MIT A;  5J50 A;  4WOG A;  4ARX A;  3LL1 A;  4MQ0 A;  1WS5 A;  1ZGS A;  3LL0 A;  3R51 A;  4PIF A;  2HYR A;  1UGY A;  3VZE A;  3LKY A;  1UGW C;  4PIT A;  3LLY A;  3EB7 A;  1XXR A;  4PIU A;  2NU5 A;  1J4S A;  2QP2 A;  4R6O A;  3VY7 A;  3VY6 A;  1J4T A;  4AKD A;  1M26 A;  1UGW A;  4QX2 A;  4QX0 A;  3WOC A;  5BN6 E;  3AQG A;  1JAC A;  1C3M A;  2C9K A;  4ARY A;  4R6N A;  1XXQ A;  1ZGR A;  4R6Q A;  1TP8 A;  5EXG A;  1VBP A;  3R50 A;  1CIY A;  3MIV A;  2JZ4 A;  1WS4 C;  3LM1 A;  1JOT A;  4QX3 A;  3MIU A;  4AKB A;  1KU8 A;  1KUJ A;  1UH1 A;  4R6P A;  1DLC A;  1VMO A;  3WOB A;  1C3K A;  1JI6 A;  1WS4 A;  2BMY A;  3VZF A;  4PIK A;  2GUX A;  2GUD A;  1WS5 C;  4DDN A;  2NUO A;  1TOQ A;  5J4T A;  1W99 A;  4R6R A;  4AK4 A;  3O44 A;  2HYQ A;  1UGY C;  1I5P A;  2GUC A;  4MOA A;  5J4X A;  2GUE A;  1PXD A;  4W8J A;  3LL2 A;  3LLZ A;  4QX1 A;  1XEZ A;  3APA A;  5J51 A;  3TOW A;  5AV7 A;  4AKC A;  3VZG A;  4D8M A;  2BMZ A;  1UGX A;  5JM1 A;  1UH0 A;  1X1V A;  2BN0 A;  3R52 A;  3P8S A;  4GX7 A;  1VBO A; 
#chains in the Genus database with same CATH homology
 2GTY A;  1OUW A;  1C3N A;  1J4U A;  3MIT A;  5J50 A;  4WOG A;  3LL1 A;  4MQ0 A;  1WS5 A;  1ZGS A;  3LL0 A;  3R51 A;  4PIF A;  2HYR A;  1UGY A;  3VZE A;  3LKY A;  1UGW C;  4PIT A;  3LLY A;  1XXR A;  4PIU A;  2NU5 A;  1J4S A;  4R6O A;  3VY7 A;  3VY6 A;  1J4T A;  4AKD A;  1M26 A;  1UGW A;  5BN6 E;  3WOC A;  3AQG A;  1JAC A;  1C3M A;  4R6N A;  1XXQ A;  1ZGR A;  4R6Q A;  1TP8 A;  5EXG A;  1VBP A;  3R50 A;  3MIV A;  2JZ4 A;  1WS4 C;  3LM1 A;  1JOT A;  3MIU A;  4AKB A;  1KU8 A;  1KUJ A;  1UH1 A;  4R6P A;  3WOB A;  1C3K A;  1WS4 A;  2BMY A;  3VZF A;  4PIK A;  2GUX A;  2GUD A;  1WS5 C;  4DDN A;  2NUO A;  1TOQ A;  5J4T A;  4R6R A;  4AK4 A;  3O44 A;  2HYQ A;  1UGY C;  2GUC A;  5J4X A;  2GUE A;  1PXD A;  3LL2 A;  3LLZ A;  1XEZ A;  3APA A;  5J51 A;  5AV7 A;  4AKC A;  3VZG A;  2BMZ A;  1UGX A;  5JM1 A;  1UH0 A;  1X1V A;  2BN0 A;  3R52 A;  3P8S A;  4GX7 A;  1VBO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1WS5C

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations