1XHM | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	46
structure length	46
Chain Sequence	ASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfc6a1795459ec8dc13ee06/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfc6a1795459ec8dc13ee06/pdb.gz): 1014 ms

reading 46 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

46 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 14 ms

Adding embedded #jmolscript: select ({0:45});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structural and Molecular Characterization of a Preferred Protein Interaction Surface on G Protein betagamma Subunits. pubmed doi rcsb
molecule keywords	Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subun
molecule tags	Signaling protein
source organism	Bos taurus
total genus	12
structure length	46
sequence length	46
ec nomenclature
pdb deposition date	2004-09-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00631	G-gamma	GGL domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	1xhmB00

3PSCG 3AH8G 3KRWG 3SN6G 5HE3G 1OMWG 4KFMG 2BCJG 1GOTG 3CIKG 1GG2G 1B9YB 4PNKG 1GP2G 1TBGE 4MK0G 5KDOG 3KRXG 5TDHG 5HE2G 3PVWG 5HE0G 2TRCG 2PBIA 1XHMB 3V5WG 1A0RG 5HE1G 3PVUG 1B9XB
chains in the Genus database with same CATH superfamily

3PSCG 3AH8G 3KRWG 1HFES 3SN6G 5HE3G 1OMWG 4KFMG 2BCJG 1IOJA 1GOTG 3CIKG 1GG2G 1B9YB 4PNKG 1GP2G 1TBGE 4MK0G 5KDOG 3KRXG 5TDHG 5HE2G 3PVWG 5HE0G 2TRCG 2PBIA 1XHMB 3V5WG 1A0RG 5HE1G 3PVUG 1B9XB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3PSC G;  3AH8 G;  3KRW G;  3SN6 G;  5HE3 G;  1OMW G;  4KFM G;  2BCJ G;  1GOT G;  3CIK G;  1GG2 G;  1B9Y B;  4PNK G;  1GP2 G;  1TBG E;  4MK0 G;  5KDO G;  3KRX G;  5TDH G;  5HE2 G;  3PVW G;  5HE0 G;  2TRC G;  2PBI A;  1XHM B;  3V5W G;  1A0R G;  5HE1 G;  3PVU G;  1B9X B; 
#chains in the Genus database with same CATH topology
 3PSC G;  3AH8 G;  3KRW G;  1HFE S;  3SN6 G;  5HE3 G;  1OMW G;  4KFM G;  2BCJ G;  1IOJ A;  1GOT G;  3CIK G;  1GG2 G;  1B9Y B;  4PNK G;  1GP2 G;  1TBG E;  4MK0 G;  5KDO G;  3KRX G;  5TDH G;  5HE2 G;  3PVW G;  5HE0 G;  2TRC G;  2PBI A;  1XHM B;  3V5W G;  1A0R G;  5HE1 G;  3PVU G;  1B9X B; 
#chains in the Genus database with same CATH homology
 3PSC G;  3AH8 G;  3KRW G;  3SN6 G;  5HE3 G;  1OMW G;  4KFM G;  2BCJ G;  1GOT G;  3CIK G;  1GG2 G;  1B9Y B;  4PNK G;  1GP2 G;  1TBG E;  4MK0 G;  5KDO G;  3KRX G;  5TDH G;  5HE2 G;  3PVW G;  5HE0 G;  2TRC G;  2PBI A;  1XHM B;  3V5W G;  1A0R G;  5HE1 G;  3PVU G;  1B9X B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1XHMB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations