1XXQA

Structure of a mannose-specific jacalin-related lectin from morus nigra
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
154
structure length
154
Chain Sequence
TQTTGTSQTIEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFKTVKITLDFPNEFLVSVSGYTGVLARLATGKDVIRSLTFKTNKKTYGPYGKEEGTPFSLPIENGLIVGFKGRSGFVVDAIGFHLSL
2040608010012014014012010080604020
051015202530Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS12 (152-160)TIV5 (148-151)S11 (140-148)S1 (17-23)TVIII2 (136-139)S2 (28-31)S5 (61-68)S10 (130-135)S3 (37-45)S7 (89-97)3H1 (100-102)TIV1 (45-48)S4 (49-58)S6 (76-81)O1 (126-128)TVIa1 (83-86)S9 (120-125)TIV4 (84-87)S8 (108-116)TI2 (116-119)TVIII1 (85-88)TI1 (72-75)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Structural analysis of the jacalin-related lectin MornigaM from the black mulberry (Morus nigra) in complex with mannose
pubmed doi rcsb
molecule keywords mannose-binding lectin
total genus 30
structure length 154
sequence length 154
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2004-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 1xxqA00
2HYQA 1M26A 3WOCA 3O44A 1VBPA 1WS5A 2NUOA 2JZ4A 1C3NA 1UGWA 5JM1A 1J4TA 4AKDA 1KU8A 4R6RA 2BMZA 2BN0A 5EXGA 4PIFA 1WS4A 1TP8A 1UGYC 3LKYA 1TOQA 1UH0A 1WS4C 1J4UA 1VBOA 3VZEA 4R6QA 5J4XA 3APAA 1XXRA 1WS5C 3VY7A 1J4SA 4R6NA 3VY6A 3P8SA 4AK4A 3LL1A 1JOTA 2NU5A 1UGWC 4R6PA 1UGXA 5J4TA 3VZFA 4WOGA 4DDNA 4AKBA 2GTYA 3LL0A 3MIUA 4GX7A 3R52A 2GUEA 3WOBA 3R50A 4AKCA 1KUJA 5AV7A 5BN6E 4PITA 3AQGA 5J51A 2BMYA 1ZGSA 2GUDA 1OUWA 3LL2A 4R6OA 5J50A 3MITA 1XXQA 3LLYA 3LLZA 1C3MA 3MIVA 1UH1A 3R51A 1ZGRA 2GUCA 1C3KA 4MQ0A 4PIUA 2GUXA 1X1VA 1PXDA 1JACA 3LM1A 3VZGA 1XEZA 2HYRA 1UGYA 4PIKA
chains in the Genus database with same CATH superfamily
2HYQA 1W99A 4QX3A 1M26A 4ARYA 3WOCA 3O44A 1VBPA 1WS5A 2NUOA 2JZ4A 1C3NA 1UGWA 1I5PA 5JM1A 1J4TA 4AKDA 1KU8A 4R6RA 2BMZA 2BN0A 5EXGA 2QP2A 4PIFA 1WS4A 1TP8A 1UGYC 3LKYA 1TOQA 1UH0A 1WS4C 1J4UA 1VBOA 4QX2A 3VZEA 4D8MA 4MOAA 4R6QA 5J4XA 3APAA 1XXRA 1WS5C 1J4SA 3VY7A 4R6NA 3VY6A 3TOWA 3P8SA 4AK4A 3LL1A 1JOTA 2NU5A 1UGWC 4R6PA 1UGXA 1CIYA 5J4TA 3VZFA 4WOGA 4DDNA 4AKBA 2GTYA 3LL0A 3EB7A 3MIUA 4GX7A 3R52A 2GUEA 4ARXA 3WOBA 3R50A 4AKCA 1KUJA 5AV7A 5BN6E 4PITA 3AQGA 5J51A 2BMYA 1ZGSA 2GUDA 1OUWA 4QX0A 3LL2A 4R6OA 5J50A 1VMOA 3MITA 1XXQA 3LLYA 3LLZA 1C3MA 3MIVA 4W8JA 4QX1A 1UH1A 3R51A 1ZGRA 2GUCA 1C3KA 4MQ0A 4PIUA 2GUXA 1X1VA 1PXDA 1JACA 3LM1A 3VZGA 2C9KA 1XEZA 2HYRA 1UGYA 4PIKA 1JI6A 1DLCA
chains in the Genus database with same CATH topology
2HYQA 1M26A 3WOCA 3O44A 1VBPA 1WS5A 2NUOA 2JZ4A 1C3NA 1UGWA 5JM1A 1J4TA 4AKDA 1KU8A 4R6RA 2BMZA 2BN0A 5EXGA 4PIFA 1WS4A 1TP8A 1UGYC 3LKYA 1TOQA 1UH0A 1WS4C 1J4UA 1VBOA 3VZEA 4R6QA 5J4XA 3APAA 1XXRA 1WS5C 3VY7A 1J4SA 4R6NA 3VY6A 3P8SA 4AK4A 3LL1A 1JOTA 2NU5A 1UGWC 4R6PA 1UGXA 5J4TA 3VZFA 4WOGA 4DDNA 4AKBA 2GTYA 3LL0A 3MIUA 4GX7A 3R52A 2GUEA 3WOBA 3R50A 4AKCA 1KUJA 5AV7A 5BN6E 4PITA 3AQGA 5J51A 2BMYA 1ZGSA 2GUDA 1OUWA 3LL2A 4R6OA 5J50A 3MITA 1XXQA 3LLYA 3LLZA 1C3MA 3MIVA 1UH1A 3R51A 1ZGRA 2GUCA 1C3KA 4MQ0A 4PIUA 2GUXA 1X1VA 1PXDA 1JACA 3LM1A 3VZGA 1XEZA 2HYRA 1UGYA 4PIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HYQ A;  1M26 A;  3WOC A;  3O44 A;  1VBP A;  1WS5 A;  2NUO A;  2JZ4 A;  1C3N A;  1UGW A;  5JM1 A;  1J4T A;  4AKD A;  1KU8 A;  4R6R A;  2BMZ A;  2BN0 A;  5EXG A;  4PIF A;  1WS4 A;  1TP8 A;  1UGY C;  3LKY A;  1TOQ A;  1UH0 A;  1WS4 C;  1J4U A;  1VBO A;  3VZE A;  4R6Q A;  5J4X A;  3APA A;  1XXR A;  1WS5 C;  3VY7 A;  1J4S A;  4R6N A;  3VY6 A;  3P8S A;  4AK4 A;  3LL1 A;  1JOT A;  2NU5 A;  1UGW C;  4R6P A;  1UGX A;  5J4T A;  3VZF A;  4WOG A;  4DDN A;  4AKB A;  2GTY A;  3LL0 A;  3MIU A;  4GX7 A;  3R52 A;  2GUE A;  3WOB A;  3R50 A;  4AKC A;  1KUJ A;  5AV7 A;  5BN6 E;  4PIT A;  3AQG A;  5J51 A;  2BMY A;  1ZGS A;  2GUD A;  1OUW A;  3LL2 A;  4R6O A;  5J50 A;  3MIT A;  1XXQ A;  3LLY A;  3LLZ A;  1C3M A;  3MIV A;  1UH1 A;  3R51 A;  1ZGR A;  2GUC A;  1C3K A;  4MQ0 A;  4PIU A;  2GUX A;  1X1V A;  1PXD A;  1JAC A;  3LM1 A;  3VZG A;  1XEZ A;  2HYR A;  1UGY A;  4PIK A; 
#chains in the Genus database with same CATH topology
 2HYQ A;  1W99 A;  4QX3 A;  1M26 A;  4ARY A;  3WOC A;  3O44 A;  1VBP A;  1WS5 A;  2NUO A;  2JZ4 A;  1C3N A;  1UGW A;  1I5P A;  5JM1 A;  1J4T A;  4AKD A;  1KU8 A;  4R6R A;  2BMZ A;  2BN0 A;  5EXG A;  2QP2 A;  4PIF A;  1WS4 A;  1TP8 A;  1UGY C;  3LKY A;  1TOQ A;  1UH0 A;  1WS4 C;  1J4U A;  1VBO A;  4QX2 A;  3VZE A;  4D8M A;  4MOA A;  4R6Q A;  5J4X A;  3APA A;  1XXR A;  1WS5 C;  1J4S A;  3VY7 A;  4R6N A;  3VY6 A;  3TOW A;  3P8S A;  4AK4 A;  3LL1 A;  1JOT A;  2NU5 A;  1UGW C;  4R6P A;  1UGX A;  1CIY A;  5J4T A;  3VZF A;  4WOG A;  4DDN A;  4AKB A;  2GTY A;  3LL0 A;  3EB7 A;  3MIU A;  4GX7 A;  3R52 A;  2GUE A;  4ARX A;  3WOB A;  3R50 A;  4AKC A;  1KUJ A;  5AV7 A;  5BN6 E;  4PIT A;  3AQG A;  5J51 A;  2BMY A;  1ZGS A;  2GUD A;  1OUW A;  4QX0 A;  3LL2 A;  4R6O A;  5J50 A;  1VMO A;  3MIT A;  1XXQ A;  3LLY A;  3LLZ A;  1C3M A;  3MIV A;  4W8J A;  4QX1 A;  1UH1 A;  3R51 A;  1ZGR A;  2GUC A;  1C3K A;  4MQ0 A;  4PIU A;  2GUX A;  1X1V A;  1PXD A;  1JAC A;  3LM1 A;  3VZG A;  2C9K A;  1XEZ A;  2HYR A;  1UGY A;  4PIK A;  1JI6 A;  1DLC A; 
#chains in the Genus database with same CATH homology
 2HYQ A;  1M26 A;  3WOC A;  3O44 A;  1VBP A;  1WS5 A;  2NUO A;  2JZ4 A;  1C3N A;  1UGW A;  5JM1 A;  1J4T A;  4AKD A;  1KU8 A;  4R6R A;  2BMZ A;  2BN0 A;  5EXG A;  4PIF A;  1WS4 A;  1TP8 A;  1UGY C;  3LKY A;  1TOQ A;  1UH0 A;  1WS4 C;  1J4U A;  1VBO A;  3VZE A;  4R6Q A;  5J4X A;  3APA A;  1XXR A;  1WS5 C;  3VY7 A;  1J4S A;  4R6N A;  3VY6 A;  3P8S A;  4AK4 A;  3LL1 A;  1JOT A;  2NU5 A;  1UGW C;  4R6P A;  1UGX A;  5J4T A;  3VZF A;  4WOG A;  4DDN A;  4AKB A;  2GTY A;  3LL0 A;  3MIU A;  4GX7 A;  3R52 A;  2GUE A;  3WOB A;  3R50 A;  4AKC A;  1KUJ A;  5AV7 A;  5BN6 E;  4PIT A;  3AQG A;  5J51 A;  2BMY A;  1ZGS A;  2GUD A;  1OUW A;  3LL2 A;  4R6O A;  5J50 A;  3MIT A;  1XXQ A;  3LLY A;  3LLZ A;  1C3M A;  3MIV A;  1UH1 A;  3R51 A;  1ZGR A;  2GUC A;  1C3K A;  4MQ0 A;  4PIU A;  2GUX A;  1X1V A;  1PXD A;  1JAC A;  3LM1 A;  3VZG A;  1XEZ A;  2HYR A;  1UGY A;  4PIK A; 
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