1YLRA

The structure of e.coli nitroreductase with bound acetate, crystal form 1
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
216
structure length
216
Chain Sequence
DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Oxygen-insensitive NAD(P)H nitroreductase
total genus 72
structure length 216
sequence length 216
chains with identical sequence B
ec nomenclature ec 1.5.1.34: 6,7-dihydropteridine reductase.
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1ylrA00
3BM2A 3M5KA 2B67A 3GE6A 2ISJA 2ISLA 3HJ9A 4TTCA 1BKJA 2BKJA 3GR3A 1ICUA 1KQDA 3BM1A 4DN2A 1VKWA 2YMVA 4URPA 4QLXA 1ZCHA 1NECA 4BNBA 3TO0A 1V5YA 3EO7A 2I7HA 3EOFA 1IDTA 4G8SA 2HAYA 4BN8A 4TTBA 1KQBA 5HDJA 4XOQA 2IFAA 3GAGA 5HEIA 3GB5A 3X21A 3HZNA 3GFAA 3HOIA 4XOOA 3BEMA 2H0UA 3E10A 4BN7A 1OO6A 3OF4A 3GBHA 3K6HA 1OO5A 3G14A 2ISKA 3KWKA 3E39A 1ICVA 5KRDA 5KO8A 4XOMA 3KOQA 1F5VA 3X22A 1YKIA 3PXVA 3H4OA 1YLRA 1ICRA 1V5ZA 1OONA 2WZWA 1OOQA 4QLYA 3TNZA 3N2SA 3QDLA 4BN6A 2R01A 3GH8A 3EO8A 1YLUA 1NOXA 2FREA 2WZVA 5KO7A 1KQCA 3EK3A 4EO3A 1DS7A 1YWQA 3GE5A 3GFDA 4BN9A 2WQFA 5J6CA 1VFRA
chains in the Genus database with same CATH superfamily
3BM2A 3M5KA 2B67A 3GE6A 2ISJA 2ISLA 3HJ9A 4TTCA 1BKJA 2BKJA 3GR3A 1ICUA 1KQDA 3BM1A 4DN2A 1VKWA 2YMVA 4URPA 4QLXA 1ZCHA 1NECA 4BNBA 3TO0A 1V5YA 3EO7A 2I7HA 3EOFA 1IDTA 4G8SA 2HAYA 4BN8A 4TTBA 1KQBA 5HDJA 4XOQA 2IFAA 3GAGA 5HEIA 3GB5A 3X21A 3HZNA 3GFAA 3HOIA 4XOOA 3BEMA 2H0UA 3E10A 4BN7A 1OO6A 3OF4A 3GBHA 3K6HA 1OO5A 3G14A 2ISKA 3KWKA 3E39A 1ICVA 5KRDA 5KO8A 4XOMA 3KOQA 1F5VA 3X22A 1YKIA 3PXVA 3H4OA 1YLRA 1ICRA 1V5ZA 1OONA 2WZWA 1J6RA 1OOQA 4QLYA 3TNZA 3N2SA 3QDLA 4BN6A 2R01A 3GH8A 3EO8A 1YLUA 1NOXA 2FREA 2WZVA 5KO7A 1KQCA 3EK3A 4EO3A 1DS7A 1YWQA 3GE5A 3GFDA 4BN9A 2WQFA 5J6CA 1VFRA
chains in the Genus database with same CATH topology
3BM2A 3M5KA 2B67A 3GE6A 2ISJA 2ISLA 3HJ9A 4TTCA 1BKJA 2BKJA 3GR3A 1ICUA 1KQDA 3BM1A 4DN2A 1VKWA 2YMVA 4URPA 4QLXA 1ZCHA 1NECA 4BNBA 3TO0A 1V5YA 3EO7A 2I7HA 3EOFA 1IDTA 4G8SA 2HAYA 4BN8A 4TTBA 1KQBA 5HDJA 4XOQA 2IFAA 3GAGA 5HEIA 3GB5A 3X21A 3HZNA 3GFAA 3HOIA 4XOOA 3BEMA 2H0UA 3E10A 4BN7A 1OO6A 3OF4A 3GBHA 3K6HA 1OO5A 3G14A 2ISKA 3KWKA 3E39A 1ICVA 5KRDA 5KO8A 4XOMA 3KOQA 1F5VA 3X22A 1YKIA 3PXVA 3H4OA 1YLRA 1ICRA 1V5ZA 1OONA 2WZWA 1J6RA 1OOQA 4QLYA 3TNZA 3N2SA 3QDLA 4BN6A 2R01A 3GH8A 3EO8A 1YLUA 1NOXA 2FREA 2WZVA 5KO7A 1KQCA 3EK3A 4EO3A 1DS7A 1YWQA 3GE5A 3GFDA 4BN9A 2WQFA 5J6CA 1VFRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BM2 A;  3M5K A;  2B67 A;  3GE6 A;  2ISJ A;  2ISL A;  3HJ9 A;  4TTC A;  1BKJ A;  2BKJ A;  3GR3 A;  1ICU A;  1KQD A;  3BM1 A;  4DN2 A;  1VKW A;  2YMV A;  4URP A;  4QLX A;  1ZCH A;  1NEC A;  4BNB A;  3TO0 A;  1V5Y A;  3EO7 A;  2I7H A;  3EOF A;  1IDT A;  4G8S A;  2HAY A;  4BN8 A;  4TTB A;  1KQB A;  5HDJ A;  4XOQ A;  2IFA A;  3GAG A;  5HEI A;  3GB5 A;  3X21 A;  3HZN A;  3GFA A;  3HOI A;  4XOO A;  3BEM A;  2H0U A;  3E10 A;  4BN7 A;  1OO6 A;  3OF4 A;  3GBH A;  3K6H A;  1OO5 A;  3G14 A;  2ISK A;  3KWK A;  3E39 A;  1ICV A;  5KRD A;  5KO8 A;  4XOM A;  3KOQ A;  1F5V A;  3X22 A;  1YKI A;  3PXV A;  3H4O A;  1YLR A;  1ICR A;  1V5Z A;  1OON A;  2WZW A;  1OOQ A;  4QLY A;  3TNZ A;  3N2S A;  3QDL A;  4BN6 A;  2R01 A;  3GH8 A;  3EO8 A;  1YLU A;  1NOX A;  2FRE A;  2WZV A;  5KO7 A;  1KQC A;  3EK3 A;  4EO3 A;  1DS7 A;  1YWQ A;  3GE5 A;  3GFD A;  4BN9 A;  2WQF A;  5J6C A;  1VFR A; 
#chains in the Genus database with same CATH topology
 3BM2 A;  3M5K A;  2B67 A;  3GE6 A;  2ISJ A;  2ISL A;  3HJ9 A;  4TTC A;  1BKJ A;  2BKJ A;  3GR3 A;  1ICU A;  1KQD A;  3BM1 A;  4DN2 A;  1VKW A;  2YMV A;  4URP A;  4QLX A;  1ZCH A;  1NEC A;  4BNB A;  3TO0 A;  1V5Y A;  3EO7 A;  2I7H A;  3EOF A;  1IDT A;  4G8S A;  2HAY A;  4BN8 A;  4TTB A;  1KQB A;  5HDJ A;  4XOQ A;  2IFA A;  3GAG A;  5HEI A;  3GB5 A;  3X21 A;  3HZN A;  3GFA A;  3HOI A;  4XOO A;  3BEM A;  2H0U A;  3E10 A;  4BN7 A;  1OO6 A;  3OF4 A;  3GBH A;  3K6H A;  1OO5 A;  3G14 A;  2ISK A;  3KWK A;  3E39 A;  1ICV A;  5KRD A;  5KO8 A;  4XOM A;  3KOQ A;  1F5V A;  3X22 A;  1YKI A;  3PXV A;  3H4O A;  1YLR A;  1ICR A;  1V5Z A;  1OON A;  2WZW A;  1J6R A;  1OOQ A;  4QLY A;  3TNZ A;  3N2S A;  3QDL A;  4BN6 A;  2R01 A;  3GH8 A;  3EO8 A;  1YLU A;  1NOX A;  2FRE A;  2WZV A;  5KO7 A;  1KQC A;  3EK3 A;  4EO3 A;  1DS7 A;  1YWQ A;  3GE5 A;  3GFD A;  4BN9 A;  2WQF A;  5J6C A;  1VFR A; 
#chains in the Genus database with same CATH homology
 3BM2 A;  3M5K A;  2B67 A;  3GE6 A;  2ISJ A;  2ISL A;  3HJ9 A;  4TTC A;  1BKJ A;  2BKJ A;  3GR3 A;  1ICU A;  1KQD A;  3BM1 A;  4DN2 A;  1VKW A;  2YMV A;  4URP A;  4QLX A;  1ZCH A;  1NEC A;  4BNB A;  3TO0 A;  1V5Y A;  3EO7 A;  2I7H A;  3EOF A;  1IDT A;  4G8S A;  2HAY A;  4BN8 A;  4TTB A;  1KQB A;  5HDJ A;  4XOQ A;  2IFA A;  3GAG A;  5HEI A;  3GB5 A;  3X21 A;  3HZN A;  3GFA A;  3HOI A;  4XOO A;  3BEM A;  2H0U A;  3E10 A;  4BN7 A;  1OO6 A;  3OF4 A;  3GBH A;  3K6H A;  1OO5 A;  3G14 A;  2ISK A;  3KWK A;  3E39 A;  1ICV A;  5KRD A;  5KO8 A;  4XOM A;  3KOQ A;  1F5V A;  3X22 A;  1YKI A;  3PXV A;  3H4O A;  1YLR A;  1ICR A;  1V5Z A;  1OON A;  2WZW A;  1J6R A;  1OOQ A;  4QLY A;  3TNZ A;  3N2S A;  3QDL A;  4BN6 A;  2R01 A;  3GH8 A;  3EO8 A;  1YLU A;  1NOX A;  2FRE A;  2WZV A;  5KO7 A;  1KQC A;  3EK3 A;  4EO3 A;  1DS7 A;  1YWQ A;  3GE5 A;  3GFD A;  4BN9 A;  2WQF A;  5J6C A;  1VFR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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