1YLUA

The structure of e. coli nitroreductase with bound acetate, crystal form 2
Total Genus 73
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
73
sequence length
216
structure length
216
Chain Sequence
DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and mechanistic studies of Escherichia coli nitroreductase with the antibiotic nitrofurazone. Reversed binding orientations in different redox states of the enzyme.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords Oxygen-insensitive NAD(P)H nitroreductase
total genus 73
structure length 216
sequence length 216
chains with identical sequence B
ec nomenclature ec 1.5.1.34: 6,7-dihydropteridine reductase.
pdb deposition date 2005-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1yluA00
2R01A 1ZCHA 3QDLA 1V5ZA 1V5YA 3GE6A 3GAGA 4QLXA 3GB5A 5HEIA 4BN8A 3BEMA 3KWKA 3EOFA 1YWQA 4XOQA 2ISKA 1YLRA 2WQFA 4TTBA 5HDJA 3K6HA 1ICUA 3GFDA 1YKIA 4BN7A 3EO8A 1VFRA 2H0UA 3GH8A 1OO5A 4EO3A 1OONA 2I7HA 3HZNA 4QLYA 2YMVA 4G8SA 1KQDA 4BNBA 3E10A 1NECA 1DS7A 2B67A 2ISLA 2HAYA 3GBHA 3OF4A 2WZWA 3HOIA 1F5VA 4BN6A 3H4OA 3X22A 1OO6A 4XOOA 3TNZA 3GE5A 2BKJA 5KO8A 5KRDA 1YLUA 3TO0A 2WZVA 3M5KA 3BM1A 3G14A 4XOMA 3EK3A 4URPA 3HJ9A 1NOXA 4DN2A 2IFAA 3PXVA 1OOQA 3KOQA 4BN9A 1VKWA 4TTCA 5KO7A 1KQCA 3GFAA 3N2SA 3EO7A 2ISJA 5J6CA 3GR3A 3E39A 1BKJA 1KQBA 1ICVA 1ICRA 2FREA 3BM2A 1IDTA 3X21A
chains in the Genus database with same CATH superfamily
2R01A 1ZCHA 3QDLA 1V5ZA 1V5YA 3GE6A 3GAGA 4QLXA 3GB5A 5HEIA 4BN8A 3BEMA 3KWKA 3EOFA 1YWQA 4XOQA 2ISKA 1YLRA 2WQFA 4TTBA 5HDJA 3K6HA 1ICUA 3GFDA 1YKIA 4BN7A 3EO8A 1VFRA 2H0UA 3GH8A 1OO5A 4EO3A 1OONA 2I7HA 3HZNA 4QLYA 2YMVA 4G8SA 1KQDA 4BNBA 3E10A 1NECA 1J6RA 1DS7A 2B67A 2ISLA 2HAYA 3GBHA 3OF4A 2WZWA 3HOIA 1F5VA 4BN6A 3H4OA 3X22A 1OO6A 4XOOA 3TNZA 3GE5A 2BKJA 5KO8A 5KRDA 1YLUA 3TO0A 2WZVA 3M5KA 3BM1A 3G14A 4XOMA 3EK3A 4URPA 3HJ9A 1NOXA 4DN2A 2IFAA 3PXVA 1OOQA 3KOQA 4BN9A 1VKWA 4TTCA 5KO7A 1KQCA 3GFAA 3N2SA 3EO7A 2ISJA 5J6CA 3GR3A 3E39A 1BKJA 1KQBA 1ICVA 1ICRA 2FREA 3BM2A 1IDTA 3X21A
chains in the Genus database with same CATH topology
2R01A 1ZCHA 3QDLA 1V5ZA 1V5YA 3GE6A 3GAGA 4QLXA 3GB5A 5HEIA 4BN8A 3BEMA 3KWKA 3EOFA 1YWQA 4XOQA 2ISKA 1YLRA 2WQFA 4TTBA 5HDJA 3K6HA 1ICUA 3GFDA 1YKIA 4BN7A 3EO8A 1VFRA 2H0UA 3GH8A 1OO5A 4EO3A 1OONA 2I7HA 3HZNA 4QLYA 2YMVA 4G8SA 1KQDA 4BNBA 3E10A 1NECA 1J6RA 1DS7A 2B67A 2ISLA 2HAYA 3GBHA 3OF4A 2WZWA 3HOIA 1F5VA 4BN6A 3H4OA 3X22A 1OO6A 4XOOA 3TNZA 3GE5A 2BKJA 5KO8A 5KRDA 1YLUA 3TO0A 2WZVA 3M5KA 3BM1A 3G14A 4XOMA 3EK3A 4URPA 3HJ9A 1NOXA 4DN2A 2IFAA 3PXVA 1OOQA 3KOQA 4BN9A 1VKWA 4TTCA 5KO7A 1KQCA 3GFAA 3N2SA 3EO7A 2ISJA 5J6CA 3GR3A 3E39A 1BKJA 1KQBA 1ICVA 1ICRA 2FREA 3BM2A 1IDTA 3X21A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R01 A;  1ZCH A;  3QDL A;  1V5Z A;  1V5Y A;  3GE6 A;  3GAG A;  4QLX A;  3GB5 A;  5HEI A;  4BN8 A;  3BEM A;  3KWK A;  3EOF A;  1YWQ A;  4XOQ A;  2ISK A;  1YLR A;  2WQF A;  4TTB A;  5HDJ A;  3K6H A;  1ICU A;  3GFD A;  1YKI A;  4BN7 A;  3EO8 A;  1VFR A;  2H0U A;  3GH8 A;  1OO5 A;  4EO3 A;  1OON A;  2I7H A;  3HZN A;  4QLY A;  2YMV A;  4G8S A;  1KQD A;  4BNB A;  3E10 A;  1NEC A;  1DS7 A;  2B67 A;  2ISL A;  2HAY A;  3GBH A;  3OF4 A;  2WZW A;  3HOI A;  1F5V A;  4BN6 A;  3H4O A;  3X22 A;  1OO6 A;  4XOO A;  3TNZ A;  3GE5 A;  2BKJ A;  5KO8 A;  5KRD A;  1YLU A;  3TO0 A;  2WZV A;  3M5K A;  3BM1 A;  3G14 A;  4XOM A;  3EK3 A;  4URP A;  3HJ9 A;  1NOX A;  4DN2 A;  2IFA A;  3PXV A;  1OOQ A;  3KOQ A;  4BN9 A;  1VKW A;  4TTC A;  5KO7 A;  1KQC A;  3GFA A;  3N2S A;  3EO7 A;  2ISJ A;  5J6C A;  3GR3 A;  3E39 A;  1BKJ A;  1KQB A;  1ICV A;  1ICR A;  2FRE A;  3BM2 A;  1IDT A;  3X21 A; 
#chains in the Genus database with same CATH topology
 2R01 A;  1ZCH A;  3QDL A;  1V5Z A;  1V5Y A;  3GE6 A;  3GAG A;  4QLX A;  3GB5 A;  5HEI A;  4BN8 A;  3BEM A;  3KWK A;  3EOF A;  1YWQ A;  4XOQ A;  2ISK A;  1YLR A;  2WQF A;  4TTB A;  5HDJ A;  3K6H A;  1ICU A;  3GFD A;  1YKI A;  4BN7 A;  3EO8 A;  1VFR A;  2H0U A;  3GH8 A;  1OO5 A;  4EO3 A;  1OON A;  2I7H A;  3HZN A;  4QLY A;  2YMV A;  4G8S A;  1KQD A;  4BNB A;  3E10 A;  1NEC A;  1J6R A;  1DS7 A;  2B67 A;  2ISL A;  2HAY A;  3GBH A;  3OF4 A;  2WZW A;  3HOI A;  1F5V A;  4BN6 A;  3H4O A;  3X22 A;  1OO6 A;  4XOO A;  3TNZ A;  3GE5 A;  2BKJ A;  5KO8 A;  5KRD A;  1YLU A;  3TO0 A;  2WZV A;  3M5K A;  3BM1 A;  3G14 A;  4XOM A;  3EK3 A;  4URP A;  3HJ9 A;  1NOX A;  4DN2 A;  2IFA A;  3PXV A;  1OOQ A;  3KOQ A;  4BN9 A;  1VKW A;  4TTC A;  5KO7 A;  1KQC A;  3GFA A;  3N2S A;  3EO7 A;  2ISJ A;  5J6C A;  3GR3 A;  3E39 A;  1BKJ A;  1KQB A;  1ICV A;  1ICR A;  2FRE A;  3BM2 A;  1IDT A;  3X21 A; 
#chains in the Genus database with same CATH homology
 2R01 A;  1ZCH A;  3QDL A;  1V5Z A;  1V5Y A;  3GE6 A;  3GAG A;  4QLX A;  3GB5 A;  5HEI A;  4BN8 A;  3BEM A;  3KWK A;  3EOF A;  1YWQ A;  4XOQ A;  2ISK A;  1YLR A;  2WQF A;  4TTB A;  5HDJ A;  3K6H A;  1ICU A;  3GFD A;  1YKI A;  4BN7 A;  3EO8 A;  1VFR A;  2H0U A;  3GH8 A;  1OO5 A;  4EO3 A;  1OON A;  2I7H A;  3HZN A;  4QLY A;  2YMV A;  4G8S A;  1KQD A;  4BNB A;  3E10 A;  1NEC A;  1J6R A;  1DS7 A;  2B67 A;  2ISL A;  2HAY A;  3GBH A;  3OF4 A;  2WZW A;  3HOI A;  1F5V A;  4BN6 A;  3H4O A;  3X22 A;  1OO6 A;  4XOO A;  3TNZ A;  3GE5 A;  2BKJ A;  5KO8 A;  5KRD A;  1YLU A;  3TO0 A;  2WZV A;  3M5K A;  3BM1 A;  3G14 A;  4XOM A;  3EK3 A;  4URP A;  3HJ9 A;  1NOX A;  4DN2 A;  2IFA A;  3PXV A;  1OOQ A;  3KOQ A;  4BN9 A;  1VKW A;  4TTC A;  5KO7 A;  1KQC A;  3GFA A;  3N2S A;  3EO7 A;  2ISJ A;  5J6C A;  3GR3 A;  3E39 A;  1BKJ A;  1KQB A;  1ICV A;  1ICR A;  2FRE A;  3BM2 A;  1IDT A;  3X21 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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