1YTQ | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	181
structure length	181
Chain Sequence	LNPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKIILYENPNFTGKKMEIIDDDVPSFHAHGYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSSDFGAPHPQVQSVRRIRDMQW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Homo sapiens
publication title	Mutation of interfaces in domain-swapped human betaB2-crystallin pubmed doi rcsb
molecule keywords	Beta crystallin B2
total genus	42
structure length	181
sequence length	181
ec nomenclature
pdb deposition date	2005-02-10

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00030	Crystall	Beta/Gamma crystallin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Crystallins	1ytqA02
2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Crystallins	1ytqA01

1ZWOA 1ZIQA 1PRRA 1ZIRA 1PRSA 1A45A 1M8UA 3HZBA 1H4AX 1ZWMA 2B1OA 2BV2A 3CW3A 4PSPA 4PSRA 3SO1A 1HDFA 2KFBA 1HA4A 1OKIA 1ZIEA 3I9HA 3ENUA 1ZGTA 2M3UA 1A7HA 1GAMA 3QK3A 2K1WA 2M3CA 2NBRA 4GR7A 2K1XA 4NI3A 3ENTA 3SNYA 2M3TA 1BLBA 4W9AA 1HK0X 3SO0A 1NPSA 1BD7A 1E7NA 2JDGA 1YHPA 3LWKA 4W9BA 2DADA 2JDFA 1YTQA 2V2UA 4GCRA 3SNZA 1AG4A 1I5IA 2KP5A 1ELPA 4AKAA 4IAUA 2G98A 4JGFA 2A5MA 5HT8A 2BB2A 3IAJA 5HT9A 1GCSA 1AMMA 1DSLA 3HZ2A 4EL6A 1A5DA 4FD9A
chains in the Genus database with same CATH superfamily

1ZIQA 1GH5A 1A45A 1HA4A 1OKIA 3ENUA 1ZGTA 1A7HA 3QK3A 2K1WA 4GR7A 3ENTA 1BLBA 4W9AA 1G6EA 1AG4A 2KP5A 1ELPA 4AKAA 2A5MA 3UJZA 3IAJA 5HT9A 4FD9A 1ZWOA 1PRRA 1BHUA 1PRSA 1ZWMA 4PSRA 3SO1A 1HDFA 2KFBA 2M3UA 4NI3A 1E7NA 3LWKA 2DADA 1YTQA 2V2UA 3SNZA 4JGFA 1AMMA 1DSLA 1ZIRA 4PSPA 1H4AX 2BV2A 3CW3A 1ZIEA 3I9HA 3SNYA 1HK0X 1NPSA 1BD7A 4W9BA 1C01A 1I5IA 4IAUA 2G98A 2BB2A 3HZ2A 4EL6A 2JDFA 1A5DA 1WKTA 3SO0A 1M8UA 3HZBA 2B1OA 1F53A 1GAMA 2M3CA 2NBRA 2K1XA 2M3TA 2JDGA 1YHPA 4GCRA 5HT8A 1GCSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1ZWO A;  1ZIQ A;  1PRR A;  1ZIR A;  1PRS A;  1A45 A;  1M8U A;  3HZB A;  1H4A X;  1ZWM A;  2B1O A;  2BV2 A;  3CW3 A;  4PSP A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  1HA4 A;  1OKI A;  1ZIE A;  3I9H A;  3ENU A;  1ZGT A;  2M3U A;  1A7H A;  1GAM A;  3QK3 A;  2K1W A;  2M3C A;  2NBR A;  4GR7 A;  2K1X A;  4NI3 A;  3ENT A;  3SNY A;  2M3T A;  1BLB A;  4W9A A;  1HK0 X;  3SO0 A;  1NPS A;  1BD7 A;  1E7N A;  2JDG A;  1YHP A;  3LWK A;  4W9B A;  2DAD A;  2JDF A;  1YTQ A;  2V2U A;  4GCR A;  3SNZ A;  1AG4 A;  1I5I A;  2KP5 A;  1ELP A;  4AKA A;  4IAU A;  2G98 A;  4JGF A;  2A5M A;  5HT8 A;  2BB2 A;  3IAJ A;  5HT9 A;  1GCS A;  1AMM A;  1DSL A;  3HZ2 A;  4EL6 A;  1A5D A;  4FD9 A; 
#chains in the Genus database with same CATH topology
 1ZIQ A;  1GH5 A;  1A45 A;  1HA4 A;  1OKI A;  3ENU A;  1ZGT A;  1A7H A;  3QK3 A;  2K1W A;  4GR7 A;  3ENT A;  1BLB A;  4W9A A;  1G6E A;  1AG4 A;  2KP5 A;  1ELP A;  4AKA A;  2A5M A;  3UJZ A;  3IAJ A;  5HT9 A;  4FD9 A;  1ZWO A;  1PRR A;  1BHU A;  1PRS A;  1ZWM A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  2M3U A;  4NI3 A;  1E7N A;  3LWK A;  2DAD A;  1YTQ A;  2V2U A;  3SNZ A;  4JGF A;  1AMM A;  1DSL A;  1ZIR A;  4PSP A;  1H4A X;  2BV2 A;  3CW3 A;  1ZIE A;  3I9H A;  3SNY A;  1HK0 X;  1NPS A;  1BD7 A;  4W9B A;  1C01 A;  1I5I A;  4IAU A;  2G98 A;  2BB2 A;  3HZ2 A;  4EL6 A;  2JDF A;  1A5D A;  1WKT A;  3SO0 A;  1M8U A;  3HZB A;  2B1O A;  1F53 A;  1GAM A;  2M3C A;  2NBR A;  2K1X A;  2M3T A;  2JDG A;  1YHP A;  4GCR A;  5HT8 A;  1GCS A; 
#chains in the Genus database with same CATH homology
 1ZWO A;  1ZIQ A;  1PRR A;  1ZIR A;  1PRS A;  1A45 A;  1M8U A;  3HZB A;  1H4A X;  1ZWM A;  2B1O A;  2BV2 A;  3CW3 A;  4PSP A;  4PSR A;  3SO1 A;  1HDF A;  2KFB A;  1HA4 A;  1OKI A;  1ZIE A;  3I9H A;  3ENU A;  1ZGT A;  2M3U A;  1A7H A;  1GAM A;  3QK3 A;  2K1W A;  2M3C A;  2NBR A;  4GR7 A;  2K1X A;  4NI3 A;  3ENT A;  3SNY A;  2M3T A;  1BLB A;  4W9A A;  1HK0 X;  3SO0 A;  1NPS A;  1BD7 A;  1E7N A;  2JDG A;  1YHP A;  3LWK A;  4W9B A;  2DAD A;  2JDF A;  1YTQ A;  2V2U A;  4GCR A;  3SNZ A;  1AG4 A;  1I5I A;  2KP5 A;  1ELP A;  4AKA A;  4IAU A;  2G98 A;  4JGF A;  2A5M A;  5HT8 A;  2BB2 A;  3IAJ A;  5HT9 A;  1GCS A;  1AMM A;  1DSL A;  3HZ2 A;  4EL6 A;  1A5D A;  4FD9 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1YTQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations