1ZGR | Genus

Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	89
sequence length	441
structure length	441
Chain Sequence	GMISVGPWGGSGGNYWSFKANHAITEIVIHVKDNIKSISFKDASGDISGTFGGKDPRENEKGDEKKIKIHWPTEYLKSISGSYGDYNGVLVIRSLSFITNLTTYGPFGSTSGGESFSIPIADSVVVGFHGRAGYYLDALGIFVQPVPHGTISFGPWGGPAGDDAFNFKVGSWIKDIIIYADAAINSIAFKDANGHCYGKFGGQDPNDIGVEKKVEIDGNLEHLKSISGTYGNYKGFEVVTSLSFITNVTKHGPFGIASGTSFSIPIEGSLVTGFHGKSGYYLDSIGIYVKPRDVEGSISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSVAFKDTSGLDSATFGGVNPKDTGEKNTVSINWPSEYLTSISGTYGQYKFKDVFTTITSLSFTTNLATYGPFGKASATSFSIPIHNNMVVGFHGRAGDYLDAIGIFVKPD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Sugar binding protein
publication title	The first crystal structure of a mimosoideae lectin reveals a novel quaternary arrangement of a widespread domain. pubmed doi rcsb
molecule keywords	Mannose/glucose-specific lectin
total genus	89
structure length	441
sequence length	441
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-04-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1zgrA02
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1zgrA01
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	1zgrA03

2NUOA 1KU8A 1VBPA 4R6PA 5J50A 1UGYC 3LL2A 1UGWA 1UGXA 3O44A 1C3KA 3MIVA 1XXRA 1WS4A 2GUCA 3VY7A 2HYRA 4R6RA 4PIKA 1X1VA 5J4XA 2BN0A 3LM1A 2NU5A 2GUDA 1J4TA 3MITA 1ZGRA 3VZGA 3WOBA 2GUXA 1TP8A 5JM1A 1JOTA 4WOGA 3VY6A 1XEZA 4DDNA 3VZEA 2GUEA 1UGYA 3APAA 1UGWC 3R50A 3MIUA 3VZFA 2JZ4A 1J4SA 1UH1A 3LL1A 1ZGSA 4AK4A 1WS4C 4R6OA 1PXDA 4MQ0A 1M26A 1C3MA 3R52A 1WS5A 4PIUA 3R51A 5BN6E 4PIFA 5J4TA 2GTYA 1OUWA 1JACA 4R6QA 1XXQA 3LLZA 4AKCA 3LLYA 1C3NA 2BMZA 3P8SA 5AV7A 5J51A 4AKBA 4R6NA 4GX7A 5EXGA 1UH0A 3WOCA 3LL0A 1TOQA 2BMYA 3LKYA 1KUJA 1VBOA 4PITA 1WS5C 2HYQA 3AQGA 4AKDA 1J4UA
chains in the Genus database with same CATH superfamily

2NUOA 1KU8A 1VBPA 3TOWA 4R6PA 5J50A 1UGYC 3LL2A 1CIYA 1UGWA 1UGXA 3O44A 1VMOA 1C3KA 3MIVA 1XXRA 1WS4A 2GUCA 3VY7A 2HYRA 4R6RA 4PIKA 4W8JA 1X1VA 4MOAA 5J4XA 2BN0A 3LM1A 2NU5A 2GUDA 1J4TA 3MITA 1ZGRA 3VZGA 3WOBA 2GUXA 1TP8A 5JM1A 1JOTA 4WOGA 3VY6A 1XEZA 4DDNA 3VZEA 1J4UA 2GUEA 1UGYA 4QX2A 4ARYA 3APAA 1JI6A 1UGWC 3R50A 3MIUA 3VZFA 2JZ4A 1J4SA 1DLCA 1UH1A 3LL1A 4QX1A 1ZGSA 4AK4A 4QX0A 1WS4C 4R6OA 1PXDA 4MQ0A 1M26A 1C3MA 3R52A 1WS5A 4PIUA 3R51A 5BN6E 1I5PA 2C9KA 4D8MA 4PIFA 5J4TA 2GTYA 1OUWA 4QX3A 1JACA 1W99A 4R6QA 1XXQA 3LLZA 4AKCA 3LLYA 1C3NA 2BMZA 3P8SA 5AV7A 3EB7A 5J51A 4AKBA 4R6NA 4GX7A 5EXGA 1UH0A 3WOCA 3LL0A 1TOQA 2BMYA 3LKYA 1KUJA 1VBOA 4PITA 1WS5C 4ARXA 2HYQA 3AQGA 4AKDA 2QP2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2NUO A;  1KU8 A;  1VBP A;  4R6P A;  5J50 A;  1UGY C;  3LL2 A;  1UGW A;  1UGX A;  3O44 A;  1C3K A;  3MIV A;  1XXR A;  1WS4 A;  2GUC A;  3VY7 A;  2HYR A;  4R6R A;  4PIK A;  1X1V A;  5J4X A;  2BN0 A;  3LM1 A;  2NU5 A;  2GUD A;  1J4T A;  3MIT A;  1ZGR A;  3VZG A;  3WOB A;  2GUX A;  1TP8 A;  5JM1 A;  1JOT A;  4WOG A;  3VY6 A;  1XEZ A;  4DDN A;  3VZE A;  2GUE A;  1UGY A;  3APA A;  1UGW C;  3R50 A;  3MIU A;  3VZF A;  2JZ4 A;  1J4S A;  1UH1 A;  3LL1 A;  1ZGS A;  4AK4 A;  1WS4 C;  4R6O A;  1PXD A;  4MQ0 A;  1M26 A;  1C3M A;  3R52 A;  1WS5 A;  4PIU A;  3R51 A;  5BN6 E;  4PIF A;  5J4T A;  2GTY A;  1OUW A;  1JAC A;  4R6Q A;  1XXQ A;  3LLZ A;  4AKC A;  3LLY A;  1C3N A;  2BMZ A;  3P8S A;  5AV7 A;  5J51 A;  4AKB A;  4R6N A;  4GX7 A;  5EXG A;  1UH0 A;  3WOC A;  3LL0 A;  1TOQ A;  2BMY A;  3LKY A;  1KUJ A;  1VBO A;  4PIT A;  1WS5 C;  2HYQ A;  3AQG A;  4AKD A;  1J4U A; 
#chains in the Genus database with same CATH topology
 2NUO A;  1KU8 A;  1VBP A;  3TOW A;  4R6P A;  5J50 A;  1UGY C;  3LL2 A;  1CIY A;  1UGW A;  1UGX A;  3O44 A;  1VMO A;  1C3K A;  3MIV A;  1XXR A;  1WS4 A;  2GUC A;  3VY7 A;  2HYR A;  4R6R A;  4PIK A;  4W8J A;  1X1V A;  4MOA A;  5J4X A;  2BN0 A;  3LM1 A;  2NU5 A;  2GUD A;  1J4T A;  3MIT A;  1ZGR A;  3VZG A;  3WOB A;  2GUX A;  1TP8 A;  5JM1 A;  1JOT A;  4WOG A;  3VY6 A;  1XEZ A;  4DDN A;  3VZE A;  1J4U A;  2GUE A;  1UGY A;  4QX2 A;  4ARY A;  3APA A;  1JI6 A;  1UGW C;  3R50 A;  3MIU A;  3VZF A;  2JZ4 A;  1J4S A;  1DLC A;  1UH1 A;  3LL1 A;  4QX1 A;  1ZGS A;  4AK4 A;  4QX0 A;  1WS4 C;  4R6O A;  1PXD A;  4MQ0 A;  1M26 A;  1C3M A;  3R52 A;  1WS5 A;  4PIU A;  3R51 A;  5BN6 E;  1I5P A;  2C9K A;  4D8M A;  4PIF A;  5J4T A;  2GTY A;  1OUW A;  4QX3 A;  1JAC A;  1W99 A;  4R6Q A;  1XXQ A;  3LLZ A;  4AKC A;  3LLY A;  1C3N A;  2BMZ A;  3P8S A;  5AV7 A;  3EB7 A;  5J51 A;  4AKB A;  4R6N A;  4GX7 A;  5EXG A;  1UH0 A;  3WOC A;  3LL0 A;  1TOQ A;  2BMY A;  3LKY A;  1KUJ A;  1VBO A;  4PIT A;  1WS5 C;  4ARX A;  2HYQ A;  3AQG A;  4AKD A;  2QP2 A; 
#chains in the Genus database with same CATH homology
 2NUO A;  1KU8 A;  1VBP A;  4R6P A;  5J50 A;  1UGY C;  3LL2 A;  1UGW A;  1UGX A;  3O44 A;  1C3K A;  3MIV A;  1XXR A;  1WS4 A;  2GUC A;  3VY7 A;  2HYR A;  4R6R A;  4PIK A;  1X1V A;  5J4X A;  2BN0 A;  3LM1 A;  2NU5 A;  2GUD A;  1J4T A;  3MIT A;  1ZGR A;  3VZG A;  3WOB A;  2GUX A;  1TP8 A;  5JM1 A;  1JOT A;  4WOG A;  3VY6 A;  1XEZ A;  4DDN A;  3VZE A;  2GUE A;  1UGY A;  3APA A;  1UGW C;  3R50 A;  3MIU A;  3VZF A;  2JZ4 A;  1J4S A;  1UH1 A;  3LL1 A;  1ZGS A;  4AK4 A;  1WS4 C;  4R6O A;  1PXD A;  4MQ0 A;  1M26 A;  1C3M A;  3R52 A;  1WS5 A;  4PIU A;  3R51 A;  5BN6 E;  4PIF A;  5J4T A;  2GTY A;  1OUW A;  1JAC A;  4R6Q A;  1XXQ A;  3LLZ A;  4AKC A;  3LLY A;  1C3N A;  2BMZ A;  3P8S A;  5AV7 A;  5J51 A;  4AKB A;  4R6N A;  4GX7 A;  5EXG A;  1UH0 A;  3WOC A;  3LL0 A;  1TOQ A;  2BMY A;  3LKY A;  1KUJ A;  1VBO A;  4PIT A;  1WS5 C;  2HYQ A;  3AQG A;  4AKD A;  1J4U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1ZGRA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations