1ZIRA

Deuterated gammae crystallin in h2o solvent
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
173
structure length
173
Chain Sequence
GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
source organism Rattus norvegicus
publication title A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
pubmed doi rcsb
molecule keywords Gamma crystallin E
total genus 50
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 2005-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA01
3SO0A 2NBRA 2A5MA 1ZWOA 4W9BA 4GCRA 5HT9A 2V2UA 1ZIEA 4JGFA 2KP5A 1NPSA 2JDFA 2K1WA 1A5DA 2M3UA 5HT8A 1PRRA 2JDGA 1BD7A 1HA4A 1AMMA 1M8UA 1OKIA 2M3CA 1ZIRA 2M3TA 3CW3A 2B1OA 2BB2A 4PSPA 4W9AA 1PRSA 3I9HA 1ZIQA 1E7NA 4GR7A 1HDFA 1YTQA 2KFBA 4IAUA 3QK3A 3SNYA 1A45A 3ENTA 2K1XA 1BLBA 3ENUA 3LWKA 1YHPA 3SNZA 4FD9A 2BV2A 1H4AX 1ZGTA 3SO1A 2DADA 3HZ2A 1I5IA 1ZWMA 1GCSA 4EL6A 1HK0X 3IAJA 1A7HA 4AKAA 1GAMA 4PSRA 2G98A 1AG4A 1ELPA 4NI3A 1DSLA 3HZBA
chains in the Genus database with same CATH superfamily
2A5MA 4W9BA 2V2UA 4JGFA 1A5DA 2JDGA 1BD7A 1HA4A 1AMMA 1M8UA 4W9AA 2M3TA 4GR7A 4IAUA 3QK3A 2K1XA 3SNZA 2BV2A 1H4AX 1ZGTA 3SO1A 2G98A 1AG4A 1ZIRA 1DSLA 3UJZA 1GH5A 3SO0A 1ZWOA 2M3CA 2B1OA 1E7NA 1YTQA 2KFBA 3ENTA 1BLBA 2DADA 1HK0X 3IAJA 1GAMA 1F53A 1ELPA 3HZBA 2NBRA 4GCRA 5HT9A 1ZIEA 5HT8A 1PRRA 1OKIA 1PRSA 3I9HA 1YHPA 4FD9A 1C01A 1WKTA 3HZ2A 1ZWMA 1GCSA 4EL6A 4AKAA 1G6EA 4PSRA 3SNYA 2KP5A 1NPSA 2JDFA 2K1WA 2M3UA 2BB2A 4PSPA 1ZIQA 1HDFA 1A45A 3ENUA 3LWKA 1I5IA 1A7HA 1BHUA 3CW3A 4NI3A
chains in the Genus database with same CATH topology
3SO0A 2NBRA 2A5MA 1ZWOA 4W9BA 4GCRA 5HT9A 2V2UA 1ZIEA 4JGFA 2KP5A 1NPSA 2JDFA 2K1WA 1A5DA 2M3UA 5HT8A 1PRRA 2JDGA 1BD7A 1HA4A 1AMMA 1M8UA 1OKIA 2M3CA 1ZIRA 2M3TA 3CW3A 2B1OA 2BB2A 4PSPA 4W9AA 1PRSA 3I9HA 1ZIQA 1E7NA 4GR7A 1HDFA 1YTQA 2KFBA 4IAUA 3QK3A 3SNYA 1A45A 3ENTA 2K1XA 1BLBA 3ENUA 3LWKA 1YHPA 3SNZA 4FD9A 2BV2A 1H4AX 1ZGTA 3SO1A 2DADA 3HZ2A 1I5IA 1ZWMA 1GCSA 4EL6A 1HK0X 3IAJA 1A7HA 4AKAA 1GAMA 4PSRA 2G98A 1AG4A 1ELPA 4NI3A 1DSLA 3HZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SO0 A;  2NBR A;  2A5M A;  1ZWO A;  4W9B A;  4GCR A;  5HT9 A;  2V2U A;  1ZIE A;  4JGF A;  2KP5 A;  1NPS A;  2JDF A;  2K1W A;  1A5D A;  2M3U A;  5HT8 A;  1PRR A;  2JDG A;  1BD7 A;  1HA4 A;  1AMM A;  1M8U A;  1OKI A;  2M3C A;  1ZIR A;  2M3T A;  3CW3 A;  2B1O A;  2BB2 A;  4PSP A;  4W9A A;  1PRS A;  3I9H A;  1ZIQ A;  1E7N A;  4GR7 A;  1HDF A;  1YTQ A;  2KFB A;  4IAU A;  3QK3 A;  3SNY A;  1A45 A;  3ENT A;  2K1X A;  1BLB A;  3ENU A;  3LWK A;  1YHP A;  3SNZ A;  4FD9 A;  2BV2 A;  1H4A X;  1ZGT A;  3SO1 A;  2DAD A;  3HZ2 A;  1I5I A;  1ZWM A;  1GCS A;  4EL6 A;  1HK0 X;  3IAJ A;  1A7H A;  4AKA A;  1GAM A;  4PSR A;  2G98 A;  1AG4 A;  1ELP A;  4NI3 A;  1DSL A;  3HZB A; 
#chains in the Genus database with same CATH topology
 2A5M A;  4W9B A;  2V2U A;  4JGF A;  1A5D A;  2JDG A;  1BD7 A;  1HA4 A;  1AMM A;  1M8U A;  4W9A A;  2M3T A;  4GR7 A;  4IAU A;  3QK3 A;  2K1X A;  3SNZ A;  2BV2 A;  1H4A X;  1ZGT A;  3SO1 A;  2G98 A;  1AG4 A;  1ZIR A;  1DSL A;  3UJZ A;  1GH5 A;  3SO0 A;  1ZWO A;  2M3C A;  2B1O A;  1E7N A;  1YTQ A;  2KFB A;  3ENT A;  1BLB A;  2DAD A;  1HK0 X;  3IAJ A;  1GAM A;  1F53 A;  1ELP A;  3HZB A;  2NBR A;  4GCR A;  5HT9 A;  1ZIE A;  5HT8 A;  1PRR A;  1OKI A;  1PRS A;  3I9H A;  1YHP A;  4FD9 A;  1C01 A;  1WKT A;  3HZ2 A;  1ZWM A;  1GCS A;  4EL6 A;  4AKA A;  1G6E A;  4PSR A;  3SNY A;  2KP5 A;  1NPS A;  2JDF A;  2K1W A;  2M3U A;  2BB2 A;  4PSP A;  1ZIQ A;  1HDF A;  1A45 A;  3ENU A;  3LWK A;  1I5I A;  1A7H A;  1BHU A;  3CW3 A;  4NI3 A; 
#chains in the Genus database with same CATH homology
 3SO0 A;  2NBR A;  2A5M A;  1ZWO A;  4W9B A;  4GCR A;  5HT9 A;  2V2U A;  1ZIE A;  4JGF A;  2KP5 A;  1NPS A;  2JDF A;  2K1W A;  1A5D A;  2M3U A;  5HT8 A;  1PRR A;  2JDG A;  1BD7 A;  1HA4 A;  1AMM A;  1M8U A;  1OKI A;  2M3C A;  1ZIR A;  2M3T A;  3CW3 A;  2B1O A;  2BB2 A;  4PSP A;  4W9A A;  1PRS A;  3I9H A;  1ZIQ A;  1E7N A;  4GR7 A;  1HDF A;  1YTQ A;  2KFB A;  4IAU A;  3QK3 A;  3SNY A;  1A45 A;  3ENT A;  2K1X A;  1BLB A;  3ENU A;  3LWK A;  1YHP A;  3SNZ A;  4FD9 A;  2BV2 A;  1H4A X;  1ZGT A;  3SO1 A;  2DAD A;  3HZ2 A;  1I5I A;  1ZWM A;  1GCS A;  4EL6 A;  1HK0 X;  3IAJ A;  1A7H A;  4AKA A;  1GAM A;  4PSR A;  2G98 A;  1AG4 A;  1ELP A;  4NI3 A;  1DSL A;  3HZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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