1ZIRA

Deuterated gammae crystallin in h2o solvent
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
173
structure length
173
Chain Sequence
GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
source organism Rattus norvegicus
publication title A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
pubmed doi rcsb
molecule keywords Gamma crystallin E
total genus 50
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 2005-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA01
1ZIRA 4IAUA 2JDGA 1I5IA 5HT8A 1H4AX 2A5MA 3HZ2A 1A7HA 2K1WA 2G98A 2M3CA 2M3TA 1GAMA 4GR7A 1A45A 2K1XA 3SO1A 1PRRA 1AG4A 1ZWOA 4PSPA 4AKAA 2M3UA 1GCSA 1OKIA 3SO0A 2V2UA 2KFBA 4NI3A 2KP5A 1PRSA 3I9HA 4W9AA 2JDFA 1ZIEA 3ENUA 3HZBA 4FD9A 4JGFA 4EL6A 1ZWMA 1E7NA 2B1OA 1NPSA 1HA4A 1HK0X 2BB2A 1AMMA 1ZIQA 3ENTA 3SNYA 1ELPA 3SNZA 1A5DA 5HT9A 4PSRA 1M8UA 4GCRA 2DADA 3QK3A 4W9BA 3IAJA 1BLBA 1DSLA 1BD7A 3CW3A 1YHPA 2NBRA 1YTQA 1HDFA 1ZGTA 2BV2A 3LWKA
chains in the Genus database with same CATH superfamily
2A5MA 2K1WA 2K1XA 1PRRA 4AKAA 1G6EA 1BHUA 4W9AA 2JDFA 3HZBA 1E7NA 1F53A 5HT9A 1BD7A 2NBRA 3LWKA 1I5IA 1H4AX 2M3CA 1GAMA 4GR7A 1AG4A 2M3UA 1C01A 2KFBA 4NI3A 4JGFA 1HA4A 2BB2A 1ELPA 1A5DA 3QK3A 3CW3A 1HDFA 1ZGTA 3HZ2A 1A45A 3SO1A 1GCSA 1OKIA 3SO0A 2V2UA 1PRSA 3I9HA 4FD9A 4EL6A 2B1OA 1NPSA 1HK0X 1AMMA 3SNZA 4PSRA 1M8UA 4GCRA 2DADA 3IAJA 1GH5A 1YHPA 2BV2A 1ZIRA 4IAUA 2JDGA 5HT8A 1A7HA 2G98A 2M3TA 1ZWOA 4PSPA 2KP5A 1ZIEA 3ENUA 1ZWMA 1ZIQA 3ENTA 3SNYA 3UJZA 1WKTA 4W9BA 1BLBA 1DSLA 1YTQA
chains in the Genus database with same CATH topology
1ZIRA 4IAUA 2JDGA 1I5IA 5HT8A 1H4AX 2A5MA 3HZ2A 1A7HA 2K1WA 2G98A 2M3CA 2M3TA 1GAMA 4GR7A 1A45A 2K1XA 3SO1A 1PRRA 1AG4A 1ZWOA 4PSPA 4AKAA 2M3UA 1GCSA 1OKIA 3SO0A 2V2UA 2KFBA 4NI3A 2KP5A 1PRSA 3I9HA 4W9AA 2JDFA 1ZIEA 3ENUA 3HZBA 4FD9A 4JGFA 4EL6A 1ZWMA 1E7NA 2B1OA 1NPSA 1HA4A 1HK0X 2BB2A 1AMMA 1ZIQA 3ENTA 3SNYA 1ELPA 3SNZA 1A5DA 5HT9A 4PSRA 1M8UA 4GCRA 2DADA 3QK3A 4W9BA 3IAJA 1BLBA 1DSLA 1BD7A 3CW3A 1YHPA 2NBRA 1YTQA 1HDFA 1ZGTA 2BV2A 3LWKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZIR A;  4IAU A;  2JDG A;  1I5I A;  5HT8 A;  1H4A X;  2A5M A;  3HZ2 A;  1A7H A;  2K1W A;  2G98 A;  2M3C A;  2M3T A;  1GAM A;  4GR7 A;  1A45 A;  2K1X A;  3SO1 A;  1PRR A;  1AG4 A;  1ZWO A;  4PSP A;  4AKA A;  2M3U A;  1GCS A;  1OKI A;  3SO0 A;  2V2U A;  2KFB A;  4NI3 A;  2KP5 A;  1PRS A;  3I9H A;  4W9A A;  2JDF A;  1ZIE A;  3ENU A;  3HZB A;  4FD9 A;  4JGF A;  4EL6 A;  1ZWM A;  1E7N A;  2B1O A;  1NPS A;  1HA4 A;  1HK0 X;  2BB2 A;  1AMM A;  1ZIQ A;  3ENT A;  3SNY A;  1ELP A;  3SNZ A;  1A5D A;  5HT9 A;  4PSR A;  1M8U A;  4GCR A;  2DAD A;  3QK3 A;  4W9B A;  3IAJ A;  1BLB A;  1DSL A;  1BD7 A;  3CW3 A;  1YHP A;  2NBR A;  1YTQ A;  1HDF A;  1ZGT A;  2BV2 A;  3LWK A; 
#chains in the Genus database with same CATH topology
 2A5M A;  2K1W A;  2K1X A;  1PRR A;  4AKA A;  1G6E A;  1BHU A;  4W9A A;  2JDF A;  3HZB A;  1E7N A;  1F53 A;  5HT9 A;  1BD7 A;  2NBR A;  3LWK A;  1I5I A;  1H4A X;  2M3C A;  1GAM A;  4GR7 A;  1AG4 A;  2M3U A;  1C01 A;  2KFB A;  4NI3 A;  4JGF A;  1HA4 A;  2BB2 A;  1ELP A;  1A5D A;  3QK3 A;  3CW3 A;  1HDF A;  1ZGT A;  3HZ2 A;  1A45 A;  3SO1 A;  1GCS A;  1OKI A;  3SO0 A;  2V2U A;  1PRS A;  3I9H A;  4FD9 A;  4EL6 A;  2B1O A;  1NPS A;  1HK0 X;  1AMM A;  3SNZ A;  4PSR A;  1M8U A;  4GCR A;  2DAD A;  3IAJ A;  1GH5 A;  1YHP A;  2BV2 A;  1ZIR A;  4IAU A;  2JDG A;  5HT8 A;  1A7H A;  2G98 A;  2M3T A;  1ZWO A;  4PSP A;  2KP5 A;  1ZIE A;  3ENU A;  1ZWM A;  1ZIQ A;  3ENT A;  3SNY A;  3UJZ A;  1WKT A;  4W9B A;  1BLB A;  1DSL A;  1YTQ A; 
#chains in the Genus database with same CATH homology
 1ZIR A;  4IAU A;  2JDG A;  1I5I A;  5HT8 A;  1H4A X;  2A5M A;  3HZ2 A;  1A7H A;  2K1W A;  2G98 A;  2M3C A;  2M3T A;  1GAM A;  4GR7 A;  1A45 A;  2K1X A;  3SO1 A;  1PRR A;  1AG4 A;  1ZWO A;  4PSP A;  4AKA A;  2M3U A;  1GCS A;  1OKI A;  3SO0 A;  2V2U A;  2KFB A;  4NI3 A;  2KP5 A;  1PRS A;  3I9H A;  4W9A A;  2JDF A;  1ZIE A;  3ENU A;  3HZB A;  4FD9 A;  4JGF A;  4EL6 A;  1ZWM A;  1E7N A;  2B1O A;  1NPS A;  1HA4 A;  1HK0 X;  2BB2 A;  1AMM A;  1ZIQ A;  3ENT A;  3SNY A;  1ELP A;  3SNZ A;  1A5D A;  5HT9 A;  4PSR A;  1M8U A;  4GCR A;  2DAD A;  3QK3 A;  4W9B A;  3IAJ A;  1BLB A;  1DSL A;  1BD7 A;  3CW3 A;  1YHP A;  2NBR A;  1YTQ A;  1HDF A;  1ZGT A;  2BV2 A;  3LWK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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