1ZIRA

Deuterated gammae crystallin in h2o solvent
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
173
structure length
173
Chain Sequence
GKITFYEDRGFQGRHYECSTDHSNLQPYFSRCNSVRVDSGCWMLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRSCRLIPHSSSHRIRIYEREDYRGQMVEITDDCPHLQDRFHFSDFHSFHVMEGYWVLYEMPNYRGRQYLLRPGEYRRYHDWGAMNARVGSLRRIMDFY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Structural protein
source organism Rattus norvegicus
publication title A comparison of refined X-ray structures of hydrogenated and perdeuterated rat gammaE-crystallin in H2O and D2O.
pubmed doi rcsb
molecule keywords Gamma crystallin E
total genus 50
structure length 173
sequence length 173
ec nomenclature
pdb deposition date 2005-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1zirA01
1ZGTA 1AG4A 2A5MA 1AMMA 1ZIRA 1GAMA 1A45A 2KP5A 4JGFA 2NBRA 5HT9A 2V2UA 3ENTA 1PRSA 3HZ2A 2B1OA 4NI3A 2JDFA 2BB2A 1GCSA 1OKIA 1ZWOA 2JDGA 3SO1A 2G98A 2KFBA 3SNZA 1ZIEA 2BV2A 1ZWMA 2M3CA 3IAJA 1ELPA 4FD9A 1I5IA 1A7HA 1NPSA 3I9HA 3LWKA 4IAUA 4W9BA 4PSPA 1PRRA 3SNYA 4AKAA 5HT8A 1YHPA 3ENUA 4EL6A 1H4AX 1BLBA 2DADA 2K1XA 1ZIQA 2M3UA 3HZBA 4PSRA 1HK0X 1E7NA 2K1WA 1BD7A 2M3TA 4W9AA 4GR7A 1HDFA 3CW3A 1YTQA 3SO0A 3QK3A 1DSLA 1HA4A 1M8UA 1A5DA 4GCRA
chains in the Genus database with same CATH superfamily
1AG4A 1A45A 5HT9A 2NBRA 1BHUA 3HZ2A 2B1OA 2JDFA 2JDGA 3SNZA 2M3CA 1ELPA 4IAUA 4PSPA 1C01A 1HK0X 2M3TA 4W9AA 4W9BA 1A5DA 2BB2A 3SO1A 2BV2A 1A7HA 3I9HA 1NPSA 5HT8A 1H4AX 2DADA 3HZBA 1YTQA 3UJZA 4GCRA 1AMMA 1ZIRA 1GAMA 2KP5A 4JGFA 2V2UA 1PRSA 1ZWOA 2G98A 2KFBA 1ZIEA 3IAJA 3SNYA 3ENUA 4EL6A 1BLBA 2K1XA 2M3UA 2K1WA 1BD7A 1G6EA 3CW3A 3SO0A 3QK3A 1WKTA 1DSLA 4GR7A 1ZGTA 2A5MA 3ENTA 4NI3A 1GH5A 1GCSA 1OKIA 1ZWMA 4FD9A 1I5IA 3LWKA 1PRRA 4AKAA 1YHPA 1ZIQA 4PSRA 1F53A 1E7NA 1HDFA 1HA4A 1M8UA
chains in the Genus database with same CATH topology
1ZGTA 1AG4A 2A5MA 1AMMA 1ZIRA 1GAMA 1A45A 2KP5A 4JGFA 2NBRA 5HT9A 2V2UA 3ENTA 1PRSA 3HZ2A 2B1OA 4NI3A 2JDFA 2BB2A 1GCSA 1OKIA 1ZWOA 2JDGA 3SO1A 2G98A 2KFBA 3SNZA 1ZIEA 2BV2A 1ZWMA 2M3CA 3IAJA 1ELPA 4FD9A 1I5IA 1A7HA 1NPSA 3I9HA 3LWKA 4IAUA 4W9BA 4PSPA 1PRRA 3SNYA 4AKAA 5HT8A 1YHPA 3ENUA 4EL6A 1H4AX 1BLBA 2DADA 2K1XA 1ZIQA 2M3UA 3HZBA 4PSRA 1HK0X 1E7NA 2K1WA 1BD7A 2M3TA 4W9AA 4GR7A 1HDFA 3CW3A 1YTQA 3SO0A 3QK3A 1DSLA 1HA4A 1M8UA 1A5DA 4GCRA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1ZGT A;  1AG4 A;  2A5M A;  1AMM A;  1ZIR A;  1GAM A;  1A45 A;  2KP5 A;  4JGF A;  2NBR A;  5HT9 A;  2V2U A;  3ENT A;  1PRS A;  3HZ2 A;  2B1O A;  4NI3 A;  2JDF A;  2BB2 A;  1GCS A;  1OKI A;  1ZWO A;  2JDG A;  3SO1 A;  2G98 A;  2KFB A;  3SNZ A;  1ZIE A;  2BV2 A;  1ZWM A;  2M3C A;  3IAJ A;  1ELP A;  4FD9 A;  1I5I A;  1A7H A;  1NPS A;  3I9H A;  3LWK A;  4IAU A;  4W9B A;  4PSP A;  1PRR A;  3SNY A;  4AKA A;  5HT8 A;  1YHP A;  3ENU A;  4EL6 A;  1H4A X;  1BLB A;  2DAD A;  2K1X A;  1ZIQ A;  2M3U A;  3HZB A;  4PSR A;  1HK0 X;  1E7N A;  2K1W A;  1BD7 A;  2M3T A;  4W9A A;  4GR7 A;  1HDF A;  3CW3 A;  1YTQ A;  3SO0 A;  3QK3 A;  1DSL A;  1HA4 A;  1M8U A;  1A5D A;  4GCR A; 
#chains in the Genus database with same CATH topology
 1AG4 A;  1A45 A;  5HT9 A;  2NBR A;  1BHU A;  3HZ2 A;  2B1O A;  2JDF A;  2JDG A;  3SNZ A;  2M3C A;  1ELP A;  4IAU A;  4PSP A;  1C01 A;  1HK0 X;  2M3T A;  4W9A A;  4W9B A;  1A5D A;  2BB2 A;  3SO1 A;  2BV2 A;  1A7H A;  3I9H A;  1NPS A;  5HT8 A;  1H4A X;  2DAD A;  3HZB A;  1YTQ A;  3UJZ A;  4GCR A;  1AMM A;  1ZIR A;  1GAM A;  2KP5 A;  4JGF A;  2V2U A;  1PRS A;  1ZWO A;  2G98 A;  2KFB A;  1ZIE A;  3IAJ A;  3SNY A;  3ENU A;  4EL6 A;  1BLB A;  2K1X A;  2M3U A;  2K1W A;  1BD7 A;  1G6E A;  3CW3 A;  3SO0 A;  3QK3 A;  1WKT A;  1DSL A;  4GR7 A;  1ZGT A;  2A5M A;  3ENT A;  4NI3 A;  1GH5 A;  1GCS A;  1OKI A;  1ZWM A;  4FD9 A;  1I5I A;  3LWK A;  1PRR A;  4AKA A;  1YHP A;  1ZIQ A;  4PSR A;  1F53 A;  1E7N A;  1HDF A;  1HA4 A;  1M8U A; 
#chains in the Genus database with same CATH homology
 1ZGT A;  1AG4 A;  2A5M A;  1AMM A;  1ZIR A;  1GAM A;  1A45 A;  2KP5 A;  4JGF A;  2NBR A;  5HT9 A;  2V2U A;  3ENT A;  1PRS A;  3HZ2 A;  2B1O A;  4NI3 A;  2JDF A;  2BB2 A;  1GCS A;  1OKI A;  1ZWO A;  2JDG A;  3SO1 A;  2G98 A;  2KFB A;  3SNZ A;  1ZIE A;  2BV2 A;  1ZWM A;  2M3C A;  3IAJ A;  1ELP A;  4FD9 A;  1I5I A;  1A7H A;  1NPS A;  3I9H A;  3LWK A;  4IAU A;  4W9B A;  4PSP A;  1PRR A;  3SNY A;  4AKA A;  5HT8 A;  1YHP A;  3ENU A;  4EL6 A;  1H4A X;  1BLB A;  2DAD A;  2K1X A;  1ZIQ A;  2M3U A;  3HZB A;  4PSR A;  1HK0 X;  1E7N A;  2K1W A;  1BD7 A;  2M3T A;  4W9A A;  4GR7 A;  1HDF A;  3CW3 A;  1YTQ A;  3SO0 A;  3QK3 A;  1DSL A;  1HA4 A;  1M8U A;  1A5D A;  4GCR A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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