1AJW | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	145
structure length	145
Chain Sequence	AVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 145 atoms

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145 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Rho-gtpase inhibitor
source organism	Bos taurus
publication title	C-terminal binding domain of Rho GDP-dissociation inhibitor directs N-terminal inhibitory peptide to GTPases. pubmed doi rcsb
molecule keywords	RHOGDI
total genus	12
structure length	145
sequence length	145
ec nomenclature
pdb deposition date	1997-05-11

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.50.30	Mainly Beta	Distorted Sandwich	Coagulation Factor XIII; Chain A, domain 1	Coagulation Factor XIII, subunit A, domain 1	1ajwA00

1QVYA 1FSTA 2JI0A 2JHXA 1AJWA 1KMTA 2BXWA 1DS6B 4F38B 1HH4D 1FSOA 1FT0A 2JHYA 1RHOA 1FT3A 1DOAB 2JHTA 1GDFA 2JHSA 2JHWA 2JHZA 2JHUA 2JHVA
chains in the Genus database with same CATH superfamily

4LN0A 4MAIA 3RBQA 4GBOA 2YOWA 2BXWA 5E80A 1HH4D 3JUAA 2YOYA 4JVBB 2YETA 5E8FA 1DOAB 3GQQA 4EISA 2R5OA 5ACGA 5DQ8A 5EMWA 4JV6B 2XWXA 4RE1A 1QVYA 5TB5B 4A02A 2VTCA 1AJWA 5FTZA 4D7UA 1FSOA 4QI8A 2JHYA 1RHOA 5ACJA 1KSJB 2LHSA 4EISB 1KSHB 5ACFA 4OY8A 1GDFA 2JHSA 4ALTA 2BEMA 5HNPA 4JHPB 5F2UA 5HGUA 5ACIA 4B5QA 2JHVA 3L15A 3ZUDA 4ALEA 1FSTA 4EIRA 3EIIA 3T5IA 1FT0A 4FMRA 5EMVA 4OY7A 1KSGB 4ALQA 2JHTA 5AA7A 5L7KA 5FOHA 2JHUA 3T5GB 5HNOA 5FJQA 2JI0A 4D7VA 2JHXA 1KMTA 4OY6A 5DQEA 1DS6B 4F38B 5IJUA 2BENA 4ALSA 4GOKC 4ALCA 4JVFB 1FT3A 3EJAA 4JV8B 4ALRA 2YOXA 2JHWA 5ACHA 2JHZA 4MAHA 5TARB 4GOJC 3KYSA 3UAMA
chains in the Genus database with same CATH topology

1QVYA 1FSTA 2JI0A 2JHXA 1AJWA 1KMTA 2BXWA 1DS6B 4F38B 1HH4D 1FSOA 1FT0A 2JHYA 1RHOA 1FT3A 1DOAB 2JHTA 1GDFA 2JHSA 2JHWA 2JHZA 2JHUA 2JHVA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1QVY A;  1FST A;  2JI0 A;  2JHX A;  1AJW A;  1KMT A;  2BXW A;  1DS6 B;  4F38 B;  1HH4 D;  1FSO A;  1FT0 A;  2JHY A;  1RHO A;  1FT3 A;  1DOA B;  2JHT A;  1GDF A;  2JHS A;  2JHW A;  2JHZ A;  2JHU A;  2JHV A; 
#chains in the Genus database with same CATH topology
 4LN0 A;  4MAI A;  3RBQ A;  4GBO A;  2YOW A;  2BXW A;  5E80 A;  1HH4 D;  3JUA A;  2YOY A;  4JVB B;  2YET A;  5E8F A;  1DOA B;  3GQQ A;  4EIS A;  2R5O A;  5ACG A;  5DQ8 A;  5EMW A;  4JV6 B;  2XWX A;  4RE1 A;  1QVY A;  5TB5 B;  4A02 A;  2VTC A;  1AJW A;  5FTZ A;  4D7U A;  1FSO A;  4QI8 A;  2JHY A;  1RHO A;  5ACJ A;  1KSJ B;  2LHS A;  4EIS B;  1KSH B;  5ACF A;  4OY8 A;  1GDF A;  2JHS A;  4ALT A;  2BEM A;  5HNP A;  4JHP B;  5F2U A;  5HGU A;  5ACI A;  4B5Q A;  2JHV A;  3L15 A;  3ZUD A;  4ALE A;  1FST A;  4EIR A;  3EII A;  3T5I A;  1FT0 A;  4FMR A;  5EMV A;  4OY7 A;  1KSG B;  4ALQ A;  2JHT A;  5AA7 A;  5L7K A;  5FOH A;  2JHU A;  3T5G B;  5HNO A;  5FJQ A;  2JI0 A;  4D7V A;  2JHX A;  1KMT A;  4OY6 A;  5DQE A;  1DS6 B;  4F38 B;  5IJU A;  2BEN A;  4ALS A;  4GOK C;  4ALC A;  4JVF B;  1FT3 A;  3EJA A;  4JV8 B;  4ALR A;  2YOX A;  2JHW A;  5ACH A;  2JHZ A;  4MAH A;  5TAR B;  4GOJ C;  3KYS A;  3UAM A; 
#chains in the Genus database with same CATH homology
 1QVY A;  1FST A;  2JI0 A;  2JHX A;  1AJW A;  1KMT A;  2BXW A;  1DS6 B;  4F38 B;  1HH4 D;  1FSO A;  1FT0 A;  2JHY A;  1RHO A;  1FT3 A;  1DOA B;  2JHT A;  1GDF A;  2JHS A;  2JHW A;  2JHZ A;  2JHU A;  2JHV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AJWA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN