The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
51
|
sequence length |
166
|
structure length |
166
|
Chain Sequence |
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Chitin binding protein
|
| molecule keywords |
CHITIN BINDING PROTEIN
|
| publication title |
Characterization of the Chitinolytic Machinery of Enterococcus Faecalis V583 and High Resolution Structure of its Oxidative Cbm33 Enzyme
pubmed doi rcsb |
| source organism |
Enterococcus faecalis
|
| total genus |
51
|
| structure length |
166
|
| sequence length |
166
|
| ec nomenclature |
ec
1.14.99.53: Lytic chitin monooxygenase. |
| pdb deposition date | 2011-09-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03067 | LPMO_10 | Lytic polysaccharide mono-oxygenase, cellulose-degrading |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Coagulation Factor XIII; Chain A, domain 1 | chitin-binding protein cbp21 |
#chains in the Genus database with same CATH superfamily 2YOW A; 2LHS A; 4OY6 A; 4ALS A; 5AA7 A; 4ALR A; 4ALQ A; 4OY7 A; 2BEN A; 4GBO A; 5FTZ A; 3UAM A; 4ALC A; 4A02 A; 2YOX A; 2BEM A; 5FJQ A; 4ALT A; 4ALE A; 5IJU A; 2YOY A; 4OY8 A; 2XWX A; #chains in the Genus database with same CATH topology 1FST A; 4JV8 B; 5HNP A; 3KYS A; 4OY6 A; 3EJA A; 1KSJ B; 2JHX A; 3EII A; 5ACF A; 5ACJ A; 2BEN A; 4GOK C; 4MAI A; 4LN0 A; 2YET A; 4GOJ C; 1DOA B; 1KSH B; 1RHO A; 4A02 A; 4JVB B; 4ALT A; 4ALE A; 5ACG A; 3RBQ A; 2JHV A; 2XWX A; 4ALS A; 3T5G B; 3JUA A; 4MAH A; 2JHT A; 2VTC A; 5AA7 A; 5F2U A; 5FTZ A; 4JVF B; 3UAM A; 3ZUD A; 5HGU A; 4EIS A; 5L7K A; 5IJU A; 5TB5 B; 2JHS A; 4OY8 A; 4QI8 A; 4F38 B; 1QVY A; 2LHS A; 2YOW A; 4D7U A; 2BXW A; 2JHW A; 5ACH A; 3L15 A; 2R5O A; 5ACI A; 4EIS B; 5HNO A; 1GDF A; 4ALR A; 1KMT A; 1HH4 D; 4GBO A; 4FMR A; 1DS6 B; 1AJW A; 2BEM A; 3T5I A; 2JHZ A; 5FJQ A; 5DQ8 A; 2JHU A; 4D7V A; 1FT0 A; 4JHP B; 4EIR A; 3GQQ A; 1FT3 A; 5DQE A; 4JV6 B; 5E8F A; 1KSG B; 5FOH A; 5TAR B; 4ALQ A; 4OY7 A; 2JI0 A; 4B5Q A; 5EMV A; 5EMW A; 5E80 A; 1FSO A; 4ALC A; 2YOX A; 2JHY A; 2YOY A; 4RE1 A; #chains in the Genus database with same CATH homology 2YOW A; 2LHS A; 4OY6 A; 4ALS A; 5AA7 A; 4ALR A; 4ALQ A; 4OY7 A; 2BEN A; 4GBO A; 5FTZ A; 3UAM A; 4ALC A; 4A02 A; 2YOX A; 2BEM A; 5FJQ A; 4ALT A; 4ALE A; 5IJU A; 2YOY A; 4OY8 A; 2XWX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
