1CQU | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	56
structure length	56
Chain Sequence	MKVIFLKDVKGKGKKGEIKNVADGYANNFLFKQGLAIEATPANLKALEAQKQKEQR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 56 atoms

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56 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Effects of varying the local propensity to form secondary structure on the stability and folding kinetics of a rapid folding mixed alpha/beta protein: characterization of a truncation mutant of the N-terminal domain of the ribosomal protein L9. pubmed doi rcsb
molecule keywords	50S RIBOSOMAL PROTEIN L9
total genus	9
structure length	56
sequence length	56
ec nomenclature
pdb deposition date	1999-08-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01281	Ribosomal_L9_N	Ribosomal protein L9, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.5.10	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9; domain 1	Ribosomal protein L9, N-terminal domain	1cquA00

4UY8H 3J7ZH 2HBAA 1DIVA 2HBBA 2HVFA 1CQUA
chains in the Genus database with same CATH superfamily

2E9XB 5GHSC 1DIVA 2HBBA 5GHRB 4KW7A 4F2CA 4RSRA 4F1EA 3EW0A 3ANWA 2E9XD 4FS8A 2HBAA 2HJQA 4EZFA 2HVFA 3LPQA 3REEA 2X4AA 3FNDA 2Q9QA 2OUTA 2Q9QB 2X49A 2QH7A 2EHOC 4OOAA 4UY8H 3TBOA 3FNVA 3J7ZH 4FR0A 4OO7A 3CO4A 3S2QA 1CQUA 2LSMA 3TBNA 4FSDA 3S2RA 4F28A 5EG5A 2R13A 2QD0A
chains in the Genus database with same CATH topology

4UY8H 3J7ZH 2HBAA 1DIVA 2HBBA 2HVFA 1CQUA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4UY8 H;  3J7Z H;  2HBA A;  1DIV A;  2HBB A;  2HVF A;  1CQU A; 
#chains in the Genus database with same CATH topology
 2E9X B;  5GHS C;  1DIV A;  2HBB A;  5GHR B;  4KW7 A;  4F2C A;  4RSR A;  4F1E A;  3EW0 A;  3ANW A;  2E9X D;  4FS8 A;  2HBA A;  2HJQ A;  4EZF A;  2HVF A;  3LPQ A;  3REE A;  2X4A A;  3FND A;  2Q9Q A;  2OUT A;  2Q9Q B;  2X49 A;  2QH7 A;  2EHO C;  4OOA A;  4UY8 H;  3TBO A;  3FNV A;  3J7Z H;  4FR0 A;  4OO7 A;  3CO4 A;  3S2Q A;  1CQU A;  2LSM A;  3TBN A;  4FSD A;  3S2R A;  4F28 A;  5EG5 A;  2R13 A;  2QD0 A; 
#chains in the Genus database with same CATH homology
 4UY8 H;  3J7Z H;  2HBA A;  1DIV A;  2HBB A;  2HVF A;  1CQU A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1CQUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations