3TBNA

Crystal structure of a miner2 homolog: a type 6 cdgsh iron-sulfur protein.
Total Genus 16
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
87
structure length
87
Chain Sequence
GSSHHHHHHTDPVIAQKAPYPVTVEAGKTYHWCACGRSKAQPFCDGSHKGTGLAPVAYTPDKAGTAYFCGCKASKAPPLCDGTHKTL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure and Molecular Evolution of CDGSH Iron-Sulfur Domains.
pubmed doi rcsb
molecule tags Metal binding protein
source organism Magnetospirillum magneticum
molecule keywords Putative uncharacterized protein
total genus 16
structure length 87
sequence length 87
ec nomenclature
pdb deposition date 2011-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09360 zf-CDGSH Iron-binding zinc finger CDGSH type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.90 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal Protein L9; domain 1 3tbnA00
2R13A 4F2CA 3EW0A 2QD0A 3FNVA 2QH7A 3S2QA 3S2RA 4OO7A 3TBNA 4EZFA 4F28A 3REEA 4OOAA 4F1EA 3LPQA 3TBOA
chains in the Genus database with same CATH superfamily
2R13A 3FNVA 4F28A 4FSDA 4FS8A 5GHSC 2X4AA 3TBNA 4OO7A 3FNDA 2Q9QB 4FR0A 1CQUA 4KW7A 2EHOC 4F2CA 2Q9QA 4RSRA 2QH7A 3S2RA 4EZFA 3ANWA 5GHRB 3CO4A 2E9XD 2HVFA 2X49A 4UY8H 5EG5A 4F1EA 3LPQA 2HJQA 3TBOA 3EW0A 2QD0A 3S2QA 2OUTA 2E9XB 2HBAA 1DIVA 3REEA 4OOAA 3J7ZH 2HBBA 2LSMA
chains in the Genus database with same CATH topology
2R13A 3FNVA 4F28A 4FSDA 4FS8A 5GHSC 2X4AA 3TBNA 4OO7A 2Q9QB 4FR0A 4KW7A 2EHOC 4F2CA 2Q9QA 4RSRA 2QH7A 3S2RA 4EZFA 3ANWA 5GHRB 2E9XD 2X49A 5EG5A 4F1EA 3LPQA 3TBOA 3EW0A 2QD0A 3S2QA 2OUTA 2E9XB 3REEA 4OOAA 2LSMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R13 A;  4F2C A;  3EW0 A;  2QD0 A;  3FNV A;  2QH7 A;  3S2Q A;  3S2R A;  4OO7 A;  3TBN A;  4EZF A;  4F28 A;  3REE A;  4OOA A;  4F1E A;  3LPQ A;  3TBO A; 
#chains in the Genus database with same CATH topology
 2R13 A;  3FNV A;  4F28 A;  4FSD A;  4FS8 A;  5GHS C;  2X4A A;  3TBN A;  4OO7 A;  3FND A;  2Q9Q B;  4FR0 A;  1CQU A;  4KW7 A;  2EHO C;  4F2C A;  2Q9Q A;  4RSR A;  2QH7 A;  3S2R A;  4EZF A;  3ANW A;  5GHR B;  3CO4 A;  2E9X D;  2HVF A;  2X49 A;  4UY8 H;  5EG5 A;  4F1E A;  3LPQ A;  2HJQ A;  3TBO A;  3EW0 A;  2QD0 A;  3S2Q A;  2OUT A;  2E9X B;  2HBA A;  1DIV A;  3REE A;  4OOA A;  3J7Z H;  2HBB A;  2LSM A; 
#chains in the Genus database with same CATH homology
 2R13 A;  3FNV A;  4F28 A;  4FSD A;  4FS8 A;  5GHS C;  2X4A A;  3TBN A;  4OO7 A;  2Q9Q B;  4FR0 A;  4KW7 A;  2EHO C;  4F2C A;  2Q9Q A;  4RSR A;  2QH7 A;  3S2R A;  4EZF A;  3ANW A;  5GHR B;  2E9X D;  2X49 A;  5EG5 A;  4F1E A;  3LPQ A;  3TBO A;  3EW0 A;  2QD0 A;  3S2Q A;  2OUT A;  2E9X B;  3REE A;  4OOA A;  2LSM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...