1GP2G

G protein heterotrimer gi_alpha_1 beta_1 gamma_2 with gdp bound
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
54
structure length
54
Chain Sequence
SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The structure of the G protein heterotrimer Gi alpha 1 beta 1 gamma 2.
pubmed doi rcsb
molecule tags Complex (gtp-binding/transducer)
source organism Rattus norvegicus
molecule keywords G PROTEIN GI ALPHA 1
total genus 13
structure length 54
sequence length 54
ec nomenclature
pdb deposition date 1996-11-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00631 G-gamma GGL domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.260.10 Few Secondary Structures Irregular G Protein Gi Gamma 2 Transducin (heterotrimeric G protein), gamma chain 1gp2G00
2TRCG 3V5WG 3AH8G 1GP2G 2BCJG 5HE2G 1B9XB 5HE1G 1OMWG 4KFMG 1B9YB 3KRWG 3PSCG 1XHMB 1GG2G 1TBGE 1A0RG 3PVWG 1GOTG 5KDOG 3CIKG 5TDHG 3SN6G 4MK0G 5HE3G 3KRXG 5HE0G 3PVUG 2PBIA 4PNKG
chains in the Genus database with same CATH superfamily
2TRCG 3V5WG 3AH8G 1GP2G 2BCJG 5HE2G 1B9XB 5HE1G 1OMWG 4KFMG 1B9YB 3KRWG 3PSCG 1XHMB 1GG2G 1TBGE 1A0RG 3PVWG 1GOTG 5KDOG 3CIKG 5TDHG 3SN6G 4MK0G 5HE3G 3KRXG 1HFES 5HE0G 3PVUG 2PBIA 1IOJA 4PNKG
chains in the Genus database with same CATH topology
2TRCG 3V5WG 3AH8G 1GP2G 2BCJG 5HE2G 1B9XB 5HE1G 1OMWG 4KFMG 1B9YB 3KRWG 3PSCG 1XHMB 1GG2G 1TBGE 1A0RG 3PVWG 1GOTG 5KDOG 3CIKG 5TDHG 3SN6G 4MK0G 5HE3G 3KRXG 5HE0G 3PVUG 2PBIA 4PNKG
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2TRC G;  3V5W G;  3AH8 G;  1GP2 G;  2BCJ G;  5HE2 G;  1B9X B;  5HE1 G;  1OMW G;  4KFM G;  1B9Y B;  3KRW G;  3PSC G;  1XHM B;  1GG2 G;  1TBG E;  1A0R G;  3PVW G;  1GOT G;  5KDO G;  3CIK G;  5TDH G;  3SN6 G;  4MK0 G;  5HE3 G;  3KRX G;  5HE0 G;  3PVU G;  2PBI A;  4PNK G; 
#chains in the Genus database with same CATH topology
 2TRC G;  3V5W G;  3AH8 G;  1GP2 G;  2BCJ G;  5HE2 G;  1B9X B;  5HE1 G;  1OMW G;  4KFM G;  1B9Y B;  3KRW G;  3PSC G;  1XHM B;  1GG2 G;  1TBG E;  1A0R G;  3PVW G;  1GOT G;  5KDO G;  3CIK G;  5TDH G;  3SN6 G;  4MK0 G;  5HE3 G;  3KRX G;  1HFE S;  5HE0 G;  3PVU G;  2PBI A;  1IOJ A;  4PNK G; 
#chains in the Genus database with same CATH homology
 2TRC G;  3V5W G;  3AH8 G;  1GP2 G;  2BCJ G;  5HE2 G;  1B9X B;  5HE1 G;  1OMW G;  4KFM G;  1B9Y B;  3KRW G;  3PSC G;  1XHM B;  1GG2 G;  1TBG E;  1A0R G;  3PVW G;  1GOT G;  5KDO G;  3CIK G;  5TDH G;  3SN6 G;  4MK0 G;  5HE3 G;  3KRX G;  5HE0 G;  3PVU G;  2PBI A;  4PNK G;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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