1IOJ | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	57
structure length	57
Chain Sequence	TPDVSSALDKLKEFGNTLEDKARELISRIKQSELSAKMREWFSETFQKVKEKLKIDS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 57 atoms

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57 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Apolipoprotein
publication title	Conformation of human apolipoprotein C-I in a lipid-mimetic environment determined by CD and NMR spectroscopy. pubmed doi rcsb
molecule keywords	APOC-I
total genus	9
structure length	57
sequence length	57
ec nomenclature
pdb deposition date	1998-05-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04691	ApoC-I	Apolipoprotein C-I (ApoC-1)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.30	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	G Protein Gi Gamma 2	1iojA00

1IOJA
chains in the Genus database with same CATH superfamily

1B9YB 2TRCG 3CIKG 4PNKG 3SN6G 1TBGE 4MK0G 3PSCG 3KRXG 5HE1G 5HE2G 5TDHG 3V5WG 2PBIA 1A0RG 1GP2G 3AH8G 2BCJG 5KDOG 1B9XB 5HE3G 1OMWG 3KRWG 3PVUG 1GOTG 4KFMG 5HE0G 1IOJA 3PVWG 1GG2G 1XHMB 1HFES
chains in the Genus database with same CATH topology

1IOJA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1IOJ A; 
#chains in the Genus database with same CATH topology
 1B9Y B;  2TRC G;  3CIK G;  4PNK G;  3SN6 G;  1TBG E;  4MK0 G;  3PSC G;  3KRX G;  5HE1 G;  5HE2 G;  5TDH G;  3V5W G;  2PBI A;  1A0R G;  1GP2 G;  3AH8 G;  2BCJ G;  5KDO G;  1B9X B;  5HE3 G;  1OMW G;  3KRW G;  3PVU G;  1GOT G;  4KFM G;  5HE0 G;  1IOJ A;  3PVW G;  1GG2 G;  1XHM B;  1HFE S; 
#chains in the Genus database with same CATH homology
 1IOJ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1IOJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations