The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
100
|
structure length |
100
|
Chain Sequence |
TAPIAITCFTRGLDIRKEKADVLCPGGCPLEEFSVYGNIVYASVSSICGAAVHRGVISNSGGPVRVYSLPGRENYSSVDANGIQSQMLSRWSASFTVTLE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
NMR structure of the LCCL domain and implications for DFNA9 deafness disorder.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Homo sapiens
|
| molecule keywords |
cochlin
|
| total genus |
21
|
| structure length |
100
|
| sequence length |
100
|
| ec nomenclature | |
| pdb deposition date | 2001-06-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03815 | LCCL | LCCL domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Ferric Hydroxamate Uptake Protein; Chain A, domain 1 | LCCL-like domain |
#chains in the Genus database with same CATH superfamily 1JBI A; #chains in the Genus database with same CATH topology 1FCP A; 2W6U A; 2GSK A; 1QJQ A; 3DDR A; 1PO3 A; 1NQF A; 2IAH A; 1BY5 A; 1QFF A; 3CSL A; 1PNZ A; 2W76 A; 1QKC A; 4RDR A; 3V89 A; 4RDT A; 1QFG A; 1XKH A; 3RGM A; 1UJW A; 2HDI A; 3M8B A; 2YSU A; 3M8D A; 3QLB A; 4AIQ A; 4CU4 A; 1BY3 A; 3RGN A; 2GRX A; 2HDF A; 1XKW A; 1NQG A; 2W16 A; 3CSN A; 3FHH A; 5FOK A; 1NQH A; 3EFM A; 4B7O A; 1NQE A; 1JBI A; 2GUF A; 1KMP A; 2W78 A; 2O5P A; 2W6T A; 1FI1 A; 1KMO A; 2W75 A; 1FEP A; 3V8X A; 1PO0 A; 2FCP A; 2W77 A; 4AIP A; #chains in the Genus database with same CATH homology 1JBI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
