The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
67
|
structure length |
67
|
Chain Sequence |
MVDPVGFAEAWKAQFPDSEPPRMELRSVGDIEQELERAKASIRRLEQEVNQERFRMIYLQTLLAKEK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Bcr-Abl oncoprotein oligomerization domain.
pubmed rcsb |
| molecule tags |
Transferase
|
| source organism |
Homo sapiens
|
| molecule keywords |
BREAKPOINT CLUSTER REGION PROTEIN
|
| total genus |
21
|
| structure length |
67
|
| sequence length |
67
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
2.7.11.1: Non-specific serine/threonine protein kinase. |
| pdb deposition date | 2001-09-25 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Few Secondary Structures | Irregular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | Bcr-Abl oncoprotein oligomerisation domain |
#chains in the Genus database with same CATH superfamily 1K1F A; #chains in the Genus database with same CATH topology 1A0A A; 5I4Z A; 5EYO A; 1HLO A; 3MUJ A; 4ATK A; 1UKL C; 4H10 A; 1R05 A; 4F3L A; 4H10 B; 4ATI A; 1AM9 A; 1MDY A; 1AN2 A; 1K1F A; 4F3L B; 1MDY B; 2YPB A; 5I50 A; 1NKP A; 2YPB B; 2LFH A; 1NKP B; 1NLW A; 4ATH A; 4AYA A; 1AN4 A; 2YPA A; 2QL2 A; 1NLW B; 2MH3 A; 3U5V A; 2QL2 B; 2YPA B; 1ZZA A; #chains in the Genus database with same CATH homology 1K1F A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
