2EB5 | Genus

Total Genus 81

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	81
sequence length	267
structure length	259
Chain Sequence	MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQREWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIVPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIKVFDTISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 259 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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259 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	Structure and Mechanism of HpcG, a Hydratase in the Homoprotocatechuate Degradation Pathway of Escherichia coli pubmed doi rcsb
molecule keywords	2-oxo-hept-3-ene-1,7-dioate hydratase
total genus	81
structure length	259
sequence length	267
chains with identical sequence	B, C, D, E
ec nomenclature	ec 4.2.1.-:
pdb deposition date	2007-02-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	2eb5A00

2WQTA 4PFZA 5D2HA 2EB5A 3QDFA 5D2KA 4MAQA 5D2JA 1QQJA 1NKQA 1WZOA 2DFUA 5D2GA 2HZYA 1SV6A 3LZKA 5D2IA 2Q1DX 1GTTA 2Q1CX 2Q1AX 2Q18X 1QCNA 4QKUA 1QCOA 1NR9A 1SAWA 2EB4A 4DBHA 3BQBA 3V77A 3R6OA 3RR6A 2EB6A 1I7OA 2Q19X 5D2FA 1HYOA 3S52A 4DBFA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2WQT A;  4PFZ A;  5D2H A;  2EB5 A;  3QDF A;  5D2K A;  4MAQ A;  5D2J A;  1QQJ A;  1NKQ A;  1WZO A;  2DFU A;  5D2G A;  2HZY A;  1SV6 A;  3LZK A;  5D2I A;  2Q1D X;  1GTT A;  2Q1C X;  2Q1A X;  2Q18 X;  1QCN A;  4QKU A;  1QCO A;  1NR9 A;  1SAW A;  2EB4 A;  4DBH A;  3BQB A;  3V77 A;  3R6O A;  3RR6 A;  2EB6 A;  1I7O A;  2Q19 X;  5D2F A;  1HYO A;  3S52 A;  4DBF A; 
#chains in the Genus database with same CATH topology
 2WQT A;  4PFZ A;  5D2H A;  2EB5 A;  3QDF A;  5D2K A;  4MAQ A;  5D2J A;  1QQJ A;  1NKQ A;  1WZO A;  2DFU A;  5D2G A;  2HZY A;  1SV6 A;  3LZK A;  5D2I A;  2Q1D X;  1GTT A;  2Q1C X;  2Q1A X;  2Q18 X;  1QCN A;  4QKU A;  1QCO A;  1NR9 A;  1SAW A;  2EB4 A;  4DBH A;  3BQB A;  3V77 A;  3R6O A;  3RR6 A;  2EB6 A;  1I7O A;  2Q19 X;  5D2F A;  1HYO A;  3S52 A;  4DBF A; 
#chains in the Genus database with same CATH homology
 2WQT A;  4PFZ A;  5D2H A;  2EB5 A;  3QDF A;  5D2K A;  4MAQ A;  5D2J A;  1QQJ A;  1NKQ A;  1WZO A;  2DFU A;  5D2G A;  2HZY A;  1SV6 A;  3LZK A;  5D2I A;  2Q1D X;  1GTT A;  2Q1C X;  2Q1A X;  2Q18 X;  1QCN A;  4QKU A;  1QCO A;  1NR9 A;  1SAW A;  2EB4 A;  4DBH A;  3BQB A;  3V77 A;  3R6O A;  3RR6 A;  2EB6 A;  1I7O A;  2Q19 X;  5D2F A;  1HYO A;  3S52 A;  4DBF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2EB5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations