2GTY | Genus

Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	17
sequence length	121
structure length	121
Chain Sequence	SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__821982706871992__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__821982706871992__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2GTY/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__821982706871992__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"821982706871992","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2GTY/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__821982706871992__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Griffithsia
publication title	Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. pubmed doi rcsb
molecule keywords	Griffithsin
total genus	17
structure length	121
sequence length	121
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-04-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	2gtyA01

4AKBA 4R6QA 3MITA 3LL1A 3VZEA 2BN0A 1UH1A 4PIUA 3P8SA 1X1VA 1C3MA 2HYRA 1J4SA 1UGWA 3WOCA 2BMZA 1VBPA 1M26A 3LLYA 1OUWA 1J4TA 4MQ0A 3R52A 4PIFA 1WS4C 1C3NA 1WS5C 3MIVA 1UGYC 1VBOA 4GX7A 4R6RA 3VY7A 3AQGA 1KU8A 3LL2A 5J51A 1ZGRA 5J50A 1XXRA 4PITA 1JACA 5J4XA 1J4UA 2NU5A 2HYQA 1XXQA 3VZFA 3O44A 2GUDA 3WOBA 1WS4A 3LL0A 4R6NA 4PIKA 1WS5A 2GUCA 5BN6E 3LM1A 3R51A 1UGYA 5J4TA 4AK4A 1KUJA 2GUEA 1UGWC 2GTYA 1C3KA 2GUXA 3MIUA 1UGXA 4DDNA 3VY6A 2JZ4A 2BMYA 1JOTA 1XEZA 3LKYA 3VZGA 5AV7A 2NUOA 1PXDA 4R6PA 3APAA 1TOQA 4R6OA 4AKCA 4WOGA 1TP8A 1ZGSA 1UH0A 5JM1A 4AKDA 5EXGA 3LLZA 3R50A
chains in the Genus database with same CATH superfamily

4AKBA 4R6QA 3MITA 4W8JA 4ARYA 3LL1A 3VZEA 2BN0A 1UH1A 4PIUA 3P8SA 4D8MA 1X1VA 1C3MA 2HYRA 1J4SA 1UGWA 3WOCA 2BMZA 1VBPA 1M26A 3LLYA 1OUWA 1J4TA 4MQ0A 3R52A 4PIFA 4QX2A 3TOWA 1C3NA 1WS4C 1WS5C 1W99A 3MIVA 1UGYC 1VBOA 4GX7A 4R6RA 4QX0A 3VY7A 3AQGA 1KU8A 3LL2A 5J51A 1ZGRA 5J50A 1XXRA 4PITA 1I5PA 1JACA 5J4XA 1J4UA 2NU5A 2HYQA 1XXQA 3VZFA 3EB7A 2QP2A 2GUDA 3O44A 3WOBA 1WS4A 3LL0A 4R6NA 4PIKA 1WS5A 1JI6A 2GUCA 3LM1A 5BN6E 4ARXA 3R51A 1UGYA 5J4TA 4AK4A 1KUJA 2GUEA 2C9KA 1UGWC 2GTYA 1C3KA 2GUXA 1DLCA 3MIUA 1UGXA 4MOAA 4DDNA 3VY6A 2JZ4A 1VMOA 4QX1A 2BMYA 1JOTA 4QX3A 1XEZA 3LKYA 3VZGA 1CIYA 5AV7A 2NUOA 1PXDA 4R6PA 3APAA 1TOQA 4R6OA 4AKCA 4WOGA 1TP8A 1ZGSA 1UH0A 5JM1A 4AKDA 5EXGA 3LLZA 3R50A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4AKB A;  4R6Q A;  3MIT A;  3LL1 A;  3VZE A;  2BN0 A;  1UH1 A;  4PIU A;  3P8S A;  1X1V A;  1C3M A;  2HYR A;  1J4S A;  1UGW A;  3WOC A;  2BMZ A;  1VBP A;  1M26 A;  3LLY A;  1OUW A;  1J4T A;  4MQ0 A;  3R52 A;  4PIF A;  1WS4 C;  1C3N A;  1WS5 C;  3MIV A;  1UGY C;  1VBO A;  4GX7 A;  4R6R A;  3VY7 A;  3AQG A;  1KU8 A;  3LL2 A;  5J51 A;  1ZGR A;  5J50 A;  1XXR A;  4PIT A;  1JAC A;  5J4X A;  1J4U A;  2NU5 A;  2HYQ A;  1XXQ A;  3VZF A;  3O44 A;  2GUD A;  3WOB A;  1WS4 A;  3LL0 A;  4R6N A;  4PIK A;  1WS5 A;  2GUC A;  5BN6 E;  3LM1 A;  3R51 A;  1UGY A;  5J4T A;  4AK4 A;  1KUJ A;  2GUE A;  1UGW C;  2GTY A;  1C3K A;  2GUX A;  3MIU A;  1UGX A;  4DDN A;  3VY6 A;  2JZ4 A;  2BMY A;  1JOT A;  1XEZ A;  3LKY A;  3VZG A;  5AV7 A;  2NUO A;  1PXD A;  4R6P A;  3APA A;  1TOQ A;  4R6O A;  4AKC A;  4WOG A;  1TP8 A;  1ZGS A;  1UH0 A;  5JM1 A;  4AKD A;  5EXG A;  3LLZ A;  3R50 A; 
#chains in the Genus database with same CATH topology
 4AKB A;  4R6Q A;  3MIT A;  4W8J A;  4ARY A;  3LL1 A;  3VZE A;  2BN0 A;  1UH1 A;  4PIU A;  3P8S A;  4D8M A;  1X1V A;  1C3M A;  2HYR A;  1J4S A;  1UGW A;  3WOC A;  2BMZ A;  1VBP A;  1M26 A;  3LLY A;  1OUW A;  1J4T A;  4MQ0 A;  3R52 A;  4PIF A;  4QX2 A;  3TOW A;  1C3N A;  1WS4 C;  1WS5 C;  1W99 A;  3MIV A;  1UGY C;  1VBO A;  4GX7 A;  4R6R A;  4QX0 A;  3VY7 A;  3AQG A;  1KU8 A;  3LL2 A;  5J51 A;  1ZGR A;  5J50 A;  1XXR A;  4PIT A;  1I5P A;  1JAC A;  5J4X A;  1J4U A;  2NU5 A;  2HYQ A;  1XXQ A;  3VZF A;  3EB7 A;  2QP2 A;  2GUD A;  3O44 A;  3WOB A;  1WS4 A;  3LL0 A;  4R6N A;  4PIK A;  1WS5 A;  1JI6 A;  2GUC A;  3LM1 A;  5BN6 E;  4ARX A;  3R51 A;  1UGY A;  5J4T A;  4AK4 A;  1KUJ A;  2GUE A;  2C9K A;  1UGW C;  2GTY A;  1C3K A;  2GUX A;  1DLC A;  3MIU A;  1UGX A;  4MOA A;  4DDN A;  3VY6 A;  2JZ4 A;  1VMO A;  4QX1 A;  2BMY A;  1JOT A;  4QX3 A;  1XEZ A;  3LKY A;  3VZG A;  1CIY A;  5AV7 A;  2NUO A;  1PXD A;  4R6P A;  3APA A;  1TOQ A;  4R6O A;  4AKC A;  4WOG A;  1TP8 A;  1ZGS A;  1UH0 A;  5JM1 A;  4AKD A;  5EXG A;  3LLZ A;  3R50 A; 
#chains in the Genus database with same CATH homology
 4AKB A;  4R6Q A;  3MIT A;  3LL1 A;  3VZE A;  2BN0 A;  1UH1 A;  4PIU A;  3P8S A;  1X1V A;  1C3M A;  2HYR A;  1J4S A;  1UGW A;  3WOC A;  2BMZ A;  1VBP A;  1M26 A;  3LLY A;  1OUW A;  1J4T A;  4MQ0 A;  3R52 A;  4PIF A;  1WS4 C;  1C3N A;  1WS5 C;  3MIV A;  1UGY C;  1VBO A;  4GX7 A;  4R6R A;  3VY7 A;  3AQG A;  1KU8 A;  3LL2 A;  5J51 A;  1ZGR A;  5J50 A;  1XXR A;  4PIT A;  1JAC A;  5J4X A;  1J4U A;  2NU5 A;  2HYQ A;  1XXQ A;  3VZF A;  3O44 A;  2GUD A;  3WOB A;  1WS4 A;  3LL0 A;  4R6N A;  4PIK A;  1WS5 A;  2GUC A;  5BN6 E;  3LM1 A;  3R51 A;  1UGY A;  5J4T A;  4AK4 A;  1KUJ A;  2GUE A;  1UGW C;  2GTY A;  1C3K A;  2GUX A;  3MIU A;  1UGX A;  4DDN A;  3VY6 A;  2JZ4 A;  2BMY A;  1JOT A;  1XEZ A;  3LKY A;  3VZG A;  5AV7 A;  2NUO A;  1PXD A;  4R6P A;  3APA A;  1TOQ A;  4R6O A;  4AKC A;  4WOG A;  1TP8 A;  1ZGS A;  1UH0 A;  5JM1 A;  4AKD A;  5EXG A;  3LLZ A;  3R50 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2GTYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations