2GUDA

Crystal structure of a complex of griffithsin with mannose at 0.94 a resolution
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
121
structure length
121
Chain Sequence
SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding.
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Griffithsia
molecule keywords griffithsin
total genus 19
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2gudA01
3MIVA 1UH1A 3P8SA 2GUEA 1XXQA 5J4XA 1UGYC 4PITA 1OUWA 1WS4C 3LLZA 3LL1A 3LL0A 4PIKA 3VY6A 3WOBA 1WS5A 3O44A 1UGYA 1M26A 4AKBA 5J51A 1WS4A 3R50A 1TOQA 3APAA 1WS5C 3LL2A 4AKDA 2HYRA 4R6RA 3VZGA 3R52A 3R51A 4R6NA 3WOCA 5J4TA 1C3NA 2NUOA 1J4UA 1UGWA 1VBPA 3LKYA 3MITA 4MQ0A 1JACA 2BMYA 1C3KA 3LM1A 5BN6E 1KU8A 2BN0A 4R6QA 3VZFA 1UGWC 1KUJA 1JOTA 3VY7A 2GTYA 5AV7A 3LLYA 5J50A 2NU5A 1J4SA 4GX7A 1TP8A 1J4TA 2BMZA 2GUCA 1UH0A 2GUXA 1PXDA 2GUDA 4AK4A 1XEZA 3MIUA 4R6PA 1UGXA 3AQGA 1ZGSA 5EXGA 4AKCA 1X1VA 3VZEA 4R6OA 1C3MA 1ZGRA 2JZ4A 4DDNA 4PIUA 5JM1A 4PIFA 1VBOA 4WOGA 2HYQA 1XXRA
chains in the Genus database with same CATH superfamily
3MIVA 4QX0A 1UH1A 3P8SA 2GUEA 1XXQA 4ARYA 5J4XA 1UGYC 4PITA 1OUWA 1WS4C 3LLZA 3LL1A 3LL0A 4PIKA 3VY6A 4W8JA 3WOBA 1WS5A 3O44A 1UGYA 1M26A 4AKBA 5J51A 1WS4A 3R50A 4QX1A 4ARXA 1TOQA 3APAA 1WS5C 3LL2A 4AKDA 2HYRA 4R6RA 3VZGA 3EB7A 3R52A 3R51A 4QX3A 4R6NA 3WOCA 2QP2A 5J4TA 1C3NA 2NUOA 1J4UA 1W99A 1UGWA 1VBPA 3LKYA 3MITA 4MQ0A 1JACA 3TOWA 2BMYA 1C3KA 4MOAA 3LM1A 4D8MA 5BN6E 1KU8A 2BN0A 4R6QA 3VZFA 1KUJA 1UGWC 1JOTA 1CIYA 1JI6A 3VY7A 2GTYA 5AV7A 3LLYA 5J50A 2NU5A 1J4SA 4GX7A 1TP8A 1J4TA 2BMZA 2GUCA 2C9KA 1UH0A 2GUXA 1PXDA 2GUDA 4AK4A 1XEZA 3MIUA 1I5PA 4R6PA 1UGXA 3AQGA 1ZGSA 5EXGA 4AKCA 1X1VA 3VZEA 1VMOA 4R6OA 1C3MA 1ZGRA 4QX2A 2JZ4A 1DLCA 4DDNA 4PIUA 5JM1A 4PIFA 1VBOA 4WOGA 2HYQA 1XXRA
chains in the Genus database with same CATH topology
3MIVA 1UH1A 3P8SA 2GUEA 1XXQA 5J4XA 1UGYC 4PITA 1OUWA 1WS4C 3LLZA 3LL1A 3LL0A 4PIKA 3VY6A 3WOBA 1WS5A 3O44A 1UGYA 1M26A 4AKBA 5J51A 1WS4A 3R50A 1TOQA 3APAA 1WS5C 3LL2A 4AKDA 2HYRA 4R6RA 3VZGA 3R52A 3R51A 4R6NA 3WOCA 5J4TA 1C3NA 2NUOA 1J4UA 1UGWA 1VBPA 3LKYA 3MITA 4MQ0A 1JACA 2BMYA 1C3KA 3LM1A 5BN6E 1KU8A 2BN0A 4R6QA 3VZFA 1UGWC 1KUJA 1JOTA 3VY7A 2GTYA 5AV7A 3LLYA 5J50A 2NU5A 1J4SA 4GX7A 1TP8A 1J4TA 2BMZA 2GUCA 1UH0A 2GUXA 1PXDA 2GUDA 4AK4A 1XEZA 3MIUA 4R6PA 1UGXA 3AQGA 1ZGSA 5EXGA 4AKCA 1X1VA 3VZEA 4R6OA 1C3MA 1ZGRA 2JZ4A 4DDNA 4PIUA 5JM1A 4PIFA 1VBOA 4WOGA 2HYQA 1XXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MIV A;  1UH1 A;  3P8S A;  2GUE A;  1XXQ A;  5J4X A;  1UGY C;  4PIT A;  1OUW A;  1WS4 C;  3LLZ A;  3LL1 A;  3LL0 A;  4PIK A;  3VY6 A;  3WOB A;  1WS5 A;  3O44 A;  1UGY A;  1M26 A;  4AKB A;  5J51 A;  1WS4 A;  3R50 A;  1TOQ A;  3APA A;  1WS5 C;  3LL2 A;  4AKD A;  2HYR A;  4R6R A;  3VZG A;  3R52 A;  3R51 A;  4R6N A;  3WOC A;  5J4T A;  1C3N A;  2NUO A;  1J4U A;  1UGW A;  1VBP A;  3LKY A;  3MIT A;  4MQ0 A;  1JAC A;  2BMY A;  1C3K A;  3LM1 A;  5BN6 E;  1KU8 A;  2BN0 A;  4R6Q A;  3VZF A;  1UGW C;  1KUJ A;  1JOT A;  3VY7 A;  2GTY A;  5AV7 A;  3LLY A;  5J50 A;  2NU5 A;  1J4S A;  4GX7 A;  1TP8 A;  1J4T A;  2BMZ A;  2GUC A;  1UH0 A;  2GUX A;  1PXD A;  2GUD A;  4AK4 A;  1XEZ A;  3MIU A;  4R6P A;  1UGX A;  3AQG A;  1ZGS A;  5EXG A;  4AKC A;  1X1V A;  3VZE A;  4R6O A;  1C3M A;  1ZGR A;  2JZ4 A;  4DDN A;  4PIU A;  5JM1 A;  4PIF A;  1VBO A;  4WOG A;  2HYQ A;  1XXR A; 
#chains in the Genus database with same CATH topology
 3MIV A;  4QX0 A;  1UH1 A;  3P8S A;  2GUE A;  1XXQ A;  4ARY A;  5J4X A;  1UGY C;  4PIT A;  1OUW A;  1WS4 C;  3LLZ A;  3LL1 A;  3LL0 A;  4PIK A;  3VY6 A;  4W8J A;  3WOB A;  1WS5 A;  3O44 A;  1UGY A;  1M26 A;  4AKB A;  5J51 A;  1WS4 A;  3R50 A;  4QX1 A;  4ARX A;  1TOQ A;  3APA A;  1WS5 C;  3LL2 A;  4AKD A;  2HYR A;  4R6R A;  3VZG A;  3EB7 A;  3R52 A;  3R51 A;  4QX3 A;  4R6N A;  3WOC A;  2QP2 A;  5J4T A;  1C3N A;  2NUO A;  1J4U A;  1W99 A;  1UGW A;  1VBP A;  3LKY A;  3MIT A;  4MQ0 A;  1JAC A;  3TOW A;  2BMY A;  1C3K A;  4MOA A;  3LM1 A;  4D8M A;  5BN6 E;  1KU8 A;  2BN0 A;  4R6Q A;  3VZF A;  1KUJ A;  1UGW C;  1JOT A;  1CIY A;  1JI6 A;  3VY7 A;  2GTY A;  5AV7 A;  3LLY A;  5J50 A;  2NU5 A;  1J4S A;  4GX7 A;  1TP8 A;  1J4T A;  2BMZ A;  2GUC A;  2C9K A;  1UH0 A;  2GUX A;  1PXD A;  2GUD A;  4AK4 A;  1XEZ A;  3MIU A;  1I5P A;  4R6P A;  1UGX A;  3AQG A;  1ZGS A;  5EXG A;  4AKC A;  1X1V A;  3VZE A;  1VMO A;  4R6O A;  1C3M A;  1ZGR A;  4QX2 A;  2JZ4 A;  1DLC A;  4DDN A;  4PIU A;  5JM1 A;  4PIF A;  1VBO A;  4WOG A;  2HYQ A;  1XXR A; 
#chains in the Genus database with same CATH homology
 3MIV A;  1UH1 A;  3P8S A;  2GUE A;  1XXQ A;  5J4X A;  1UGY C;  4PIT A;  1OUW A;  1WS4 C;  3LLZ A;  3LL1 A;  3LL0 A;  4PIK A;  3VY6 A;  3WOB A;  1WS5 A;  3O44 A;  1UGY A;  1M26 A;  4AKB A;  5J51 A;  1WS4 A;  3R50 A;  1TOQ A;  3APA A;  1WS5 C;  3LL2 A;  4AKD A;  2HYR A;  4R6R A;  3VZG A;  3R52 A;  3R51 A;  4R6N A;  3WOC A;  5J4T A;  1C3N A;  2NUO A;  1J4U A;  1UGW A;  1VBP A;  3LKY A;  3MIT A;  4MQ0 A;  1JAC A;  2BMY A;  1C3K A;  3LM1 A;  5BN6 E;  1KU8 A;  2BN0 A;  4R6Q A;  3VZF A;  1UGW C;  1KUJ A;  1JOT A;  3VY7 A;  2GTY A;  5AV7 A;  3LLY A;  5J50 A;  2NU5 A;  1J4S A;  4GX7 A;  1TP8 A;  1J4T A;  2BMZ A;  2GUC A;  1UH0 A;  2GUX A;  1PXD A;  2GUD A;  4AK4 A;  1XEZ A;  3MIU A;  4R6P A;  1UGX A;  3AQG A;  1ZGS A;  5EXG A;  4AKC A;  1X1V A;  3VZE A;  4R6O A;  1C3M A;  1ZGR A;  2JZ4 A;  4DDN A;  4PIU A;  5JM1 A;  4PIF A;  1VBO A;  4WOG A;  2HYQ A;  1XXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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