2GUX | Genus

Total Genus 18

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	18
sequence length	126
structure length	126
Chain Sequence	LVPRGSLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Griffithsia
publication title	Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding. pubmed doi rcsb
molecule keywords	griffithsin
total genus	18
structure length	126
sequence length	126
ec nomenclature
pdb deposition date	2006-05-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	2guxA01

4R6OA 3VZGA 2GUDA 4DDNA 5J50A 4PIUA 2HYQA 3LL1A 4WOGA 1UGWA 2BN0A 4AKDA 3LLYA 3LL0A 4AKBA 3WOCA 4R6RA 1UGXA 3MIVA 3LL2A 4PIKA 1M26A 3R51A 1J4UA 1UGWC 1C3MA 4R6QA 1PXDA 5BN6E 1WS5A 5AV7A 1WS4A 1ZGSA 3MITA 1TP8A 4R6PA 3VZFA 5EXGA 1X1VA 1VBOA 1VBPA 3VY7A 1KUJA 5JM1A 4R6NA 1UGYA 1ZGRA 1TOQA 3LKYA 5J4XA 1J4SA 2JZ4A 1WS5C 2NU5A 1WS4C 2GTYA 1JACA 4PIFA 1XEZA 1OUWA 2BMZA 3MIUA 3LM1A 3AQGA 2GUXA 1JOTA 1KU8A 2GUEA 3VY6A 3R52A 1UGYC 1J4TA 5J51A 1C3KA 1XXQA 2NUOA 4PITA 4AKCA 3LLZA 1C3NA 3O44A 3P8SA 1UH1A 3R50A 3APAA 4AK4A 3WOBA 4GX7A 2GUCA 3VZEA 2BMYA 2HYRA 1UH0A 5J4TA 4MQ0A 1XXRA
chains in the Genus database with same CATH superfamily

4R6OA 3VZGA 2GUDA 4DDNA 5J50A 4PIUA 4ARXA 2HYQA 3LL1A 4WOGA 1UGWA 2BN0A 4AKDA 3LLYA 3LL0A 4AKBA 3TOWA 4QX3A 3WOCA 4R6RA 1VMOA 2QP2A 1UGXA 1DLCA 3MIVA 1CIYA 3LL2A 4PIKA 1M26A 3R51A 1J4UA 1UGWC 1C3MA 4R6QA 1PXDA 5BN6E 1WS5A 5AV7A 1WS4A 1ZGSA 3MITA 1TP8A 4R6PA 2C9KA 3VZFA 1VBOA 1X1VA 1VBPA 5EXGA 3VY7A 1KUJA 5JM1A 4R6NA 1UGYA 1ZGRA 1TOQA 3LKYA 5J4XA 1J4SA 2JZ4A 1WS5C 4QX2A 2NU5A 1W99A 1WS4C 4MOAA 2GTYA 1JACA 4PIFA 1XEZA 1OUWA 2BMZA 3MIUA 3LM1A 3AQGA 2GUXA 1JOTA 1KU8A 1I5PA 2GUEA 4QX1A 3VY6A 4W8JA 3R52A 1UGYC 1J4TA 4ARYA 5J51A 1C3KA 4D8MA 1XXQA 2NUOA 4PITA 4AKCA 3LLZA 4QX0A 1C3NA 3O44A 3P8SA 1UH1A 3R50A 3APAA 4AK4A 3WOBA 1JI6A 4GX7A 2GUCA 3VZEA 2BMYA 2HYRA 1UH0A 5J4TA 3EB7A 4MQ0A 1XXRA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4R6O A;  3VZG A;  2GUD A;  4DDN A;  5J50 A;  4PIU A;  2HYQ A;  3LL1 A;  4WOG A;  1UGW A;  2BN0 A;  4AKD A;  3LLY A;  3LL0 A;  4AKB A;  3WOC A;  4R6R A;  1UGX A;  3MIV A;  3LL2 A;  4PIK A;  1M26 A;  3R51 A;  1J4U A;  1UGW C;  1C3M A;  4R6Q A;  1PXD A;  5BN6 E;  1WS5 A;  5AV7 A;  1WS4 A;  1ZGS A;  3MIT A;  1TP8 A;  4R6P A;  3VZF A;  5EXG A;  1X1V A;  1VBO A;  1VBP A;  3VY7 A;  1KUJ A;  5JM1 A;  4R6N A;  1UGY A;  1ZGR A;  1TOQ A;  3LKY A;  5J4X A;  1J4S A;  2JZ4 A;  1WS5 C;  2NU5 A;  1WS4 C;  2GTY A;  1JAC A;  4PIF A;  1XEZ A;  1OUW A;  2BMZ A;  3MIU A;  3LM1 A;  3AQG A;  2GUX A;  1JOT A;  1KU8 A;  2GUE A;  3VY6 A;  3R52 A;  1UGY C;  1J4T A;  5J51 A;  1C3K A;  1XXQ A;  2NUO A;  4PIT A;  4AKC A;  3LLZ A;  1C3N A;  3O44 A;  3P8S A;  1UH1 A;  3R50 A;  3APA A;  4AK4 A;  3WOB A;  4GX7 A;  2GUC A;  3VZE A;  2BMY A;  2HYR A;  1UH0 A;  5J4T A;  4MQ0 A;  1XXR A; 
#chains in the Genus database with same CATH topology
 4R6O A;  3VZG A;  2GUD A;  4DDN A;  5J50 A;  4PIU A;  4ARX A;  2HYQ A;  3LL1 A;  4WOG A;  1UGW A;  2BN0 A;  4AKD A;  3LLY A;  3LL0 A;  4AKB A;  3TOW A;  4QX3 A;  3WOC A;  4R6R A;  1VMO A;  2QP2 A;  1UGX A;  1DLC A;  3MIV A;  1CIY A;  3LL2 A;  4PIK A;  1M26 A;  3R51 A;  1J4U A;  1UGW C;  1C3M A;  4R6Q A;  1PXD A;  5BN6 E;  1WS5 A;  5AV7 A;  1WS4 A;  1ZGS A;  3MIT A;  1TP8 A;  4R6P A;  2C9K A;  3VZF A;  1VBO A;  1X1V A;  1VBP A;  5EXG A;  3VY7 A;  1KUJ A;  5JM1 A;  4R6N A;  1UGY A;  1ZGR A;  1TOQ A;  3LKY A;  5J4X A;  1J4S A;  2JZ4 A;  1WS5 C;  4QX2 A;  2NU5 A;  1W99 A;  1WS4 C;  4MOA A;  2GTY A;  1JAC A;  4PIF A;  1XEZ A;  1OUW A;  2BMZ A;  3MIU A;  3LM1 A;  3AQG A;  2GUX A;  1JOT A;  1KU8 A;  1I5P A;  2GUE A;  4QX1 A;  3VY6 A;  4W8J A;  3R52 A;  1UGY C;  1J4T A;  4ARY A;  5J51 A;  1C3K A;  4D8M A;  1XXQ A;  2NUO A;  4PIT A;  4AKC A;  3LLZ A;  4QX0 A;  1C3N A;  3O44 A;  3P8S A;  1UH1 A;  3R50 A;  3APA A;  4AK4 A;  3WOB A;  1JI6 A;  4GX7 A;  2GUC A;  3VZE A;  2BMY A;  2HYR A;  1UH0 A;  5J4T A;  3EB7 A;  4MQ0 A;  1XXR A; 
#chains in the Genus database with same CATH homology
 4R6O A;  3VZG A;  2GUD A;  4DDN A;  5J50 A;  4PIU A;  2HYQ A;  3LL1 A;  4WOG A;  1UGW A;  2BN0 A;  4AKD A;  3LLY A;  3LL0 A;  4AKB A;  3WOC A;  4R6R A;  1UGX A;  3MIV A;  3LL2 A;  4PIK A;  1M26 A;  3R51 A;  1J4U A;  1UGW C;  1C3M A;  4R6Q A;  1PXD A;  5BN6 E;  1WS5 A;  5AV7 A;  1WS4 A;  1ZGS A;  3MIT A;  1TP8 A;  4R6P A;  3VZF A;  5EXG A;  1X1V A;  1VBO A;  1VBP A;  3VY7 A;  1KUJ A;  5JM1 A;  4R6N A;  1UGY A;  1ZGR A;  1TOQ A;  3LKY A;  5J4X A;  1J4S A;  2JZ4 A;  1WS5 C;  2NU5 A;  1WS4 C;  2GTY A;  1JAC A;  4PIF A;  1XEZ A;  1OUW A;  2BMZ A;  3MIU A;  3LM1 A;  3AQG A;  2GUX A;  1JOT A;  1KU8 A;  2GUE A;  3VY6 A;  3R52 A;  1UGY C;  1J4T A;  5J51 A;  1C3K A;  1XXQ A;  2NUO A;  4PIT A;  4AKC A;  3LLZ A;  1C3N A;  3O44 A;  3P8S A;  1UH1 A;  3R50 A;  3APA A;  4AK4 A;  3WOB A;  4GX7 A;  2GUC A;  3VZE A;  2BMY A;  2HYR A;  1UH0 A;  5J4T A;  4MQ0 A;  1XXR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2GUXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations