2HYQ | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	121
structure length	121
Chain Sequence	SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Griffithsia
publication title	Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin. pubmed doi rcsb
molecule keywords	Griffithsin
total genus	16
structure length	121
sequence length	121
chains with identical sequence	B
ec nomenclature
pdb deposition date	2006-08-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	2hyqA01

5BN6E 5J4TA 3VZFA 3VZGA 3MITA 4AKDA 1JOTA 4WOGA 5J4XA 3VY7A 4AKBA 1WS5C 1ZGRA 3VY6A 2BN0A 1UGWA 5J50A 1XXRA 2BMYA 3LLYA 2GUDA 3APAA 3P8SA 3R52A 3LL0A 4R6RA 3VZEA 1C3NA 5JM1A 2GUEA 3WOCA 1UH0A 1UGXA 3O44A 4PIFA 1OUWA 3LLZA 1KU8A 2HYQA 1WS4A 4DDNA 1XXQA 4PIUA 5J51A 4PIKA 1J4TA 1UGYA 1ZGSA 2NU5A 3R51A 3LKYA 2GUXA 3LL2A 1UH1A 1J4UA 2JZ4A 1C3KA 3MIVA 3LL1A 1JACA 1J4SA 1WS5A 3WOBA 4AK4A 4GX7A 2BMZA 1TP8A 1M26A 2GUCA 1UGWC 5AV7A 4MQ0A 1TOQA 3LM1A 4R6NA 2GTYA 2HYRA 1PXDA 1C3MA 2NUOA 1XEZA 1X1VA 4PITA 3R50A 5EXGA 1VBOA 4AKCA 3AQGA 1WS4C 4R6OA 1KUJA 3MIUA 4R6PA 4R6QA 1UGYC 1VBPA
chains in the Genus database with same CATH superfamily

5BN6E 1W99A 5J4TA 3VZFA 3VZGA 3MITA 4AKDA 1CIYA 1JOTA 4WOGA 5J4XA 3VY7A 4AKBA 1WS5C 1ZGRA 3VY6A 2BN0A 1UGWA 1JI6A 3EB7A 5J50A 1XXRA 4D8MA 2BMYA 3LLYA 2GUDA 3APAA 3P8SA 4QX3A 3R52A 3LL0A 4R6RA 4QX0A 3VZEA 1C3NA 5JM1A 2GUEA 3WOCA 1UH0A 1UGXA 3O44A 4PIFA 1OUWA 3LLZA 1KU8A 2HYQA 1WS4A 4DDNA 4ARXA 1XXQA 4PIUA 5J51A 4PIKA 1J4TA 4QX1A 1UGYA 4W8JA 1ZGSA 1VMOA 2NU5A 3R51A 3LKYA 2GUXA 3LL2A 1J4UA 1UH1A 2JZ4A 1C3KA 3MIVA 3LL1A 1JACA 2C9KA 1J4SA 1WS5A 2QP2A 3WOBA 4AK4A 4GX7A 2BMZA 1TP8A 1M26A 2GUCA 1UGWC 5AV7A 4MQ0A 4QX2A 1TOQA 3LM1A 4R6NA 2GTYA 2HYRA 1PXDA 1C3MA 2NUOA 1XEZA 1DLCA 1X1VA 4PITA 3R50A 5EXGA 1VBOA 4AKCA 3AQGA 1WS4C 4R6OA 1KUJA 3MIUA 4R6PA 4R6QA 1I5PA 4MOAA 4ARYA 1VBPA 1UGYC 3TOWA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5BN6 E;  5J4T A;  3VZF A;  3VZG A;  3MIT A;  4AKD A;  1JOT A;  4WOG A;  5J4X A;  3VY7 A;  4AKB A;  1WS5 C;  1ZGR A;  3VY6 A;  2BN0 A;  1UGW A;  5J50 A;  1XXR A;  2BMY A;  3LLY A;  2GUD A;  3APA A;  3P8S A;  3R52 A;  3LL0 A;  4R6R A;  3VZE A;  1C3N A;  5JM1 A;  2GUE A;  3WOC A;  1UH0 A;  1UGX A;  3O44 A;  4PIF A;  1OUW A;  3LLZ A;  1KU8 A;  2HYQ A;  1WS4 A;  4DDN A;  1XXQ A;  4PIU A;  5J51 A;  4PIK A;  1J4T A;  1UGY A;  1ZGS A;  2NU5 A;  3R51 A;  3LKY A;  2GUX A;  3LL2 A;  1UH1 A;  1J4U A;  2JZ4 A;  1C3K A;  3MIV A;  3LL1 A;  1JAC A;  1J4S A;  1WS5 A;  3WOB A;  4AK4 A;  4GX7 A;  2BMZ A;  1TP8 A;  1M26 A;  2GUC A;  1UGW C;  5AV7 A;  4MQ0 A;  1TOQ A;  3LM1 A;  4R6N A;  2GTY A;  2HYR A;  1PXD A;  1C3M A;  2NUO A;  1XEZ A;  1X1V A;  4PIT A;  3R50 A;  5EXG A;  1VBO A;  4AKC A;  3AQG A;  1WS4 C;  4R6O A;  1KUJ A;  3MIU A;  4R6P A;  4R6Q A;  1UGY C;  1VBP A; 
#chains in the Genus database with same CATH topology
 5BN6 E;  1W99 A;  5J4T A;  3VZF A;  3VZG A;  3MIT A;  4AKD A;  1CIY A;  1JOT A;  4WOG A;  5J4X A;  3VY7 A;  4AKB A;  1WS5 C;  1ZGR A;  3VY6 A;  2BN0 A;  1UGW A;  1JI6 A;  3EB7 A;  5J50 A;  1XXR A;  4D8M A;  2BMY A;  3LLY A;  2GUD A;  3APA A;  3P8S A;  4QX3 A;  3R52 A;  3LL0 A;  4R6R A;  4QX0 A;  3VZE A;  1C3N A;  5JM1 A;  2GUE A;  3WOC A;  1UH0 A;  1UGX A;  3O44 A;  4PIF A;  1OUW A;  3LLZ A;  1KU8 A;  2HYQ A;  1WS4 A;  4DDN A;  4ARX A;  1XXQ A;  4PIU A;  5J51 A;  4PIK A;  1J4T A;  4QX1 A;  1UGY A;  4W8J A;  1ZGS A;  1VMO A;  2NU5 A;  3R51 A;  3LKY A;  2GUX A;  3LL2 A;  1J4U A;  1UH1 A;  2JZ4 A;  1C3K A;  3MIV A;  3LL1 A;  1JAC A;  2C9K A;  1J4S A;  1WS5 A;  2QP2 A;  3WOB A;  4AK4 A;  4GX7 A;  2BMZ A;  1TP8 A;  1M26 A;  2GUC A;  1UGW C;  5AV7 A;  4MQ0 A;  4QX2 A;  1TOQ A;  3LM1 A;  4R6N A;  2GTY A;  2HYR A;  1PXD A;  1C3M A;  2NUO A;  1XEZ A;  1DLC A;  1X1V A;  4PIT A;  3R50 A;  5EXG A;  1VBO A;  4AKC A;  3AQG A;  1WS4 C;  4R6O A;  1KUJ A;  3MIU A;  4R6P A;  4R6Q A;  1I5P A;  4MOA A;  4ARY A;  1VBP A;  1UGY C;  3TOW A; 
#chains in the Genus database with same CATH homology
 5BN6 E;  5J4T A;  3VZF A;  3VZG A;  3MIT A;  4AKD A;  1JOT A;  4WOG A;  5J4X A;  3VY7 A;  4AKB A;  1WS5 C;  1ZGR A;  3VY6 A;  2BN0 A;  1UGW A;  5J50 A;  1XXR A;  2BMY A;  3LLY A;  2GUD A;  3APA A;  3P8S A;  3R52 A;  3LL0 A;  4R6R A;  3VZE A;  1C3N A;  5JM1 A;  2GUE A;  3WOC A;  1UH0 A;  1UGX A;  3O44 A;  4PIF A;  1OUW A;  3LLZ A;  1KU8 A;  2HYQ A;  1WS4 A;  4DDN A;  1XXQ A;  4PIU A;  5J51 A;  4PIK A;  1J4T A;  1UGY A;  1ZGS A;  2NU5 A;  3R51 A;  3LKY A;  2GUX A;  3LL2 A;  1UH1 A;  1J4U A;  2JZ4 A;  1C3K A;  3MIV A;  3LL1 A;  1JAC A;  1J4S A;  1WS5 A;  3WOB A;  4AK4 A;  4GX7 A;  2BMZ A;  1TP8 A;  1M26 A;  2GUC A;  1UGW C;  5AV7 A;  4MQ0 A;  1TOQ A;  3LM1 A;  4R6N A;  2GTY A;  2HYR A;  1PXD A;  1C3M A;  2NUO A;  1XEZ A;  1X1V A;  4PIT A;  3R50 A;  5EXG A;  1VBO A;  4AKC A;  3AQG A;  1WS4 C;  4R6O A;  1KUJ A;  3MIU A;  4R6P A;  4R6Q A;  1UGY C;  1VBP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2HYQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations