2HYRA

Crystal structure of a complex of griffithsin with maltose
Total Genus 17

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
121
structure length
121
Chain Sequence
SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TVIII1 (16-19)TIV3 (33-36)EMPTYS1 (20-25)S5 (50-51)S4 (45-46)TIV1 (25-28)S2 (29-34)S7 (69-76)S11 (111-120)S3 (37-40)TII1 (53-56)TI1 (76-79)S6 (58-65)TIV4 (65-68)TIV6 (95-98)S10 (98-107)TIV7 (107-110)S8 (81-86)S9 (91-95)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Griffithsia
publication title Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharides to the potent antiviral protein griffithsin.
pubmed doi rcsb
molecule keywords Griffithsin
total genus 17
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2hyrA01
1OUWA 3R52A 2HYRA 4R6OA 1UGYA 3LLYA 4WOGA 1XEZA 3VY7A 4MQ0A 5BN6E 5J4XA 1UGWA 1M26A 1PXDA 4AKDA 5AV7A 1VBPA 3VZGA 3P8SA 1WS4C 1X1VA 1KUJA 3LL1A 1WS5A 1VBOA 1J4SA 4PITA 3LLZA 1UGYC 3APAA 2NUOA 2GUXA 1UGWC 5J50A 3VY6A 2GUEA 1XXQA 4R6RA 3WOCA 1ZGRA 3LM1A 4AKCA 2GUDA 5J51A 2GTYA 4AK4A 3VZFA 2BN0A 1TOQA 4DDNA 2HYQA 4GX7A 1UGXA 2GUCA 3LKYA 4PIFA 2NU5A 2BMYA 3LL0A 1JOTA 3R51A 2JZ4A 4PIUA 3MITA 1WS4A 3VZEA 4R6NA 1XXRA 3WOBA 1WS5C 3R50A 1JACA 1C3MA 1TP8A 2BMZA 3MIVA 5JM1A 1J4TA 1UH0A 1UH1A 4AKBA 4R6PA 1C3NA 5EXGA 4R6QA 1ZGSA 3MIUA 1KU8A 5J4TA 3LL2A 3AQGA 4PIKA 1C3KA 1J4UA 3O44A
chains in the Genus database with same CATH superfamily
1OUWA 3R52A 2HYRA 4R6OA 1UGYA 3LLYA 4WOGA 1XEZA 3VY7A 4MQ0A 5BN6E 5J4XA 4QX1A 1UGWA 1VMOA 1M26A 1PXDA 4AKDA 5AV7A 1VBPA 3VZGA 3P8SA 1WS4C 1X1VA 1KUJA 3LL1A 1WS5A 1VBOA 1JI6A 4ARXA 4MOAA 1W99A 1J4SA 4PITA 3LLZA 1UGYC 3APAA 2NUOA 2GUXA 1UGWC 5J50A 1CIYA 3VY6A 3TOWA 3EB7A 2GUEA 1XXQA 4R6RA 3WOCA 1ZGRA 3LM1A 4AKCA 2GUDA 5J51A 2GTYA 4AK4A 3VZFA 4D8MA 2BN0A 4QX2A 1TOQA 4DDNA 2HYQA 4GX7A 1UGXA 2GUCA 3LKYA 4PIFA 2NU5A 2BMYA 3LL0A 1JOTA 1I5PA 2JZ4A 3R51A 4PIUA 4QX3A 3MITA 1WS4A 3VZEA 2C9KA 4QX0A 4R6NA 1XXRA 3WOBA 1WS5C 3R50A 1JACA 1C3MA 1TP8A 2BMZA 2QP2A 3MIVA 5JM1A 1J4TA 4W8JA 1DLCA 1UH0A 1UH1A 4AKBA 4R6PA 1C3NA 5EXGA 4R6QA 1ZGSA 4ARYA 3MIUA 1KU8A 5J4TA 3LL2A 3AQGA 4PIKA 1C3KA 1J4UA 3O44A
chains in the Genus database with same CATH topology
1OUWA 3R52A 2HYRA 4R6OA 1UGYA 3LLYA 4WOGA 1XEZA 3VY7A 4MQ0A 5BN6E 5J4XA 1UGWA 1M26A 1PXDA 4AKDA 5AV7A 1VBPA 3VZGA 3P8SA 1WS4C 1X1VA 1KUJA 3LL1A 1WS5A 1VBOA 1J4SA 4PITA 3LLZA 1UGYC 3APAA 2NUOA 2GUXA 1UGWC 5J50A 3VY6A 2GUEA 1XXQA 4R6RA 3WOCA 1ZGRA 3LM1A 4AKCA 2GUDA 5J51A 2GTYA 4AK4A 3VZFA 2BN0A 1TOQA 4DDNA 2HYQA 4GX7A 1UGXA 2GUCA 3LKYA 4PIFA 2NU5A 2BMYA 3LL0A 1JOTA 3R51A 2JZ4A 4PIUA 3MITA 1WS4A 3VZEA 4R6NA 1XXRA 3WOBA 1WS5C 3R50A 1JACA 1C3MA 1TP8A 2BMZA 3MIVA 5JM1A 1J4TA 1UH0A 1UH1A 4AKBA 4R6PA 1C3NA 5EXGA 4R6QA 1ZGSA 3MIUA 1KU8A 5J4TA 3LL2A 3AQGA 4PIKA 1C3KA 1J4UA 3O44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OUW A;  3R52 A;  2HYR A;  4R6O A;  1UGY A;  3LLY A;  4WOG A;  1XEZ A;  3VY7 A;  4MQ0 A;  5BN6 E;  5J4X A;  1UGW A;  1M26 A;  1PXD A;  4AKD A;  5AV7 A;  1VBP A;  3VZG A;  3P8S A;  1WS4 C;  1X1V A;  1KUJ A;  3LL1 A;  1WS5 A;  1VBO A;  1J4S A;  4PIT A;  3LLZ A;  1UGY C;  3APA A;  2NUO A;  2GUX A;  1UGW C;  5J50 A;  3VY6 A;  2GUE A;  1XXQ A;  4R6R A;  3WOC A;  1ZGR A;  3LM1 A;  4AKC A;  2GUD A;  5J51 A;  2GTY A;  4AK4 A;  3VZF A;  2BN0 A;  1TOQ A;  4DDN A;  2HYQ A;  4GX7 A;  1UGX A;  2GUC A;  3LKY A;  4PIF A;  2NU5 A;  2BMY A;  3LL0 A;  1JOT A;  3R51 A;  2JZ4 A;  4PIU A;  3MIT A;  1WS4 A;  3VZE A;  4R6N A;  1XXR A;  3WOB A;  1WS5 C;  3R50 A;  1JAC A;  1C3M A;  1TP8 A;  2BMZ A;  3MIV A;  5JM1 A;  1J4T A;  1UH0 A;  1UH1 A;  4AKB A;  4R6P A;  1C3N A;  5EXG A;  4R6Q A;  1ZGS A;  3MIU A;  1KU8 A;  5J4T A;  3LL2 A;  3AQG A;  4PIK A;  1C3K A;  1J4U A;  3O44 A; 
#chains in the Genus database with same CATH topology
 1OUW A;  3R52 A;  2HYR A;  4R6O A;  1UGY A;  3LLY A;  4WOG A;  1XEZ A;  3VY7 A;  4MQ0 A;  5BN6 E;  5J4X A;  4QX1 A;  1UGW A;  1VMO A;  1M26 A;  1PXD A;  4AKD A;  5AV7 A;  1VBP A;  3VZG A;  3P8S A;  1WS4 C;  1X1V A;  1KUJ A;  3LL1 A;  1WS5 A;  1VBO A;  1JI6 A;  4ARX A;  4MOA A;  1W99 A;  1J4S A;  4PIT A;  3LLZ A;  1UGY C;  3APA A;  2NUO A;  2GUX A;  1UGW C;  5J50 A;  1CIY A;  3VY6 A;  3TOW A;  3EB7 A;  2GUE A;  1XXQ A;  4R6R A;  3WOC A;  1ZGR A;  3LM1 A;  4AKC A;  2GUD A;  5J51 A;  2GTY A;  4AK4 A;  3VZF A;  4D8M A;  2BN0 A;  4QX2 A;  1TOQ A;  4DDN A;  2HYQ A;  4GX7 A;  1UGX A;  2GUC A;  3LKY A;  4PIF A;  2NU5 A;  2BMY A;  3LL0 A;  1JOT A;  1I5P A;  2JZ4 A;  3R51 A;  4PIU A;  4QX3 A;  3MIT A;  1WS4 A;  3VZE A;  2C9K A;  4QX0 A;  4R6N A;  1XXR A;  3WOB A;  1WS5 C;  3R50 A;  1JAC A;  1C3M A;  1TP8 A;  2BMZ A;  2QP2 A;  3MIV A;  5JM1 A;  1J4T A;  4W8J A;  1DLC A;  1UH0 A;  1UH1 A;  4AKB A;  4R6P A;  1C3N A;  5EXG A;  4R6Q A;  1ZGS A;  4ARY A;  3MIU A;  1KU8 A;  5J4T A;  3LL2 A;  3AQG A;  4PIK A;  1C3K A;  1J4U A;  3O44 A; 
#chains in the Genus database with same CATH homology
 1OUW A;  3R52 A;  2HYR A;  4R6O A;  1UGY A;  3LLY A;  4WOG A;  1XEZ A;  3VY7 A;  4MQ0 A;  5BN6 E;  5J4X A;  1UGW A;  1M26 A;  1PXD A;  4AKD A;  5AV7 A;  1VBP A;  3VZG A;  3P8S A;  1WS4 C;  1X1V A;  1KUJ A;  3LL1 A;  1WS5 A;  1VBO A;  1J4S A;  4PIT A;  3LLZ A;  1UGY C;  3APA A;  2NUO A;  2GUX A;  1UGW C;  5J50 A;  3VY6 A;  2GUE A;  1XXQ A;  4R6R A;  3WOC A;  1ZGR A;  3LM1 A;  4AKC A;  2GUD A;  5J51 A;  2GTY A;  4AK4 A;  3VZF A;  2BN0 A;  1TOQ A;  4DDN A;  2HYQ A;  4GX7 A;  1UGX A;  2GUC A;  3LKY A;  4PIF A;  2NU5 A;  2BMY A;  3LL0 A;  1JOT A;  3R51 A;  2JZ4 A;  4PIU A;  3MIT A;  1WS4 A;  3VZE A;  4R6N A;  1XXR A;  3WOB A;  1WS5 C;  3R50 A;  1JAC A;  1C3M A;  1TP8 A;  2BMZ A;  3MIV A;  5JM1 A;  1J4T A;  1UH0 A;  1UH1 A;  4AKB A;  4R6P A;  1C3N A;  5EXG A;  4R6Q A;  1ZGS A;  3MIU A;  1KU8 A;  5J4T A;  3LL2 A;  3AQG A;  4PIK A;  1C3K A;  1J4U A;  3O44 A; 
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